Wall clock time and date at job start Mon Mar 30 2020 05:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47160 * 2 1 4 4 C 1.53002 * 109.47121 * 119.99650 * 2 1 3 5 5 H 1.09004 * 109.47491 * 297.13652 * 4 2 1 6 6 C 1.50701 * 109.46843 * 57.13137 * 4 2 1 7 7 H 1.07998 * 120.00254 * 32.23295 * 6 4 2 8 8 C 1.37879 * 119.99868 * 212.22812 * 6 4 2 9 9 N 1.31519 * 120.00460 * 3.30147 * 8 6 4 10 10 Si 1.86803 * 120.00162 * 183.29874 * 8 6 4 11 11 H 1.48505 * 109.47076 * 270.00439 * 10 8 6 12 12 H 1.48502 * 109.47428 * 150.00369 * 10 8 6 13 13 H 1.48503 * 109.46822 * 30.00036 * 10 8 6 14 14 C 1.50704 * 109.47393 * 177.12953 * 4 2 1 15 15 C 1.38739 * 119.79108 * 299.73028 * 14 4 2 16 16 C 1.37853 * 120.68367 * 179.73843 * 15 14 4 17 17 C 1.38941 * 119.81426 * 0.54977 * 16 15 14 18 18 O 1.34809 * 133.49162 * 179.72783 * 17 16 15 19 19 C 1.34451 * 110.88713 * 179.97438 * 18 17 16 20 20 C 1.33992 * 110.15593 * 0.02562 * 19 18 17 21 21 C 1.40486 * 119.22474 * 359.70818 * 17 16 15 22 22 C 1.36740 * 119.78804 * 119.99929 * 14 4 2 23 23 H 1.08994 * 109.47388 * 303.85248 * 1 2 3 24 24 H 1.08996 * 109.46790 * 63.85657 * 1 2 3 25 25 H 1.09005 * 109.46912 * 183.85120 * 1 2 3 26 26 H 1.09004 * 109.47415 * 239.99469 * 2 1 3 27 27 H 1.09005 * 109.47507 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46941 * 299.99502 * 3 2 1 29 29 H 1.09004 * 109.47390 * 59.99454 * 3 2 1 30 30 H 0.97005 * 119.99333 * 353.63150 * 9 8 6 31 31 H 1.08000 * 119.65608 * 0.02562 * 15 14 4 32 32 H 1.08002 * 120.09014 * 180.25350 * 16 15 14 33 33 H 1.08002 * 124.92297 * 179.97438 * 19 18 17 34 34 H 1.08000 * 126.90803 * 179.97438 * 20 19 18 35 35 H 1.08000 * 120.14443 * 0.02562 * 22 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7192 -0.1785 2.1386 6 6 1.4804 -2.1200 1.2854 7 1 1.2913 -2.6499 0.3636 8 6 1.2098 -2.7232 2.4953 9 7 1.3786 -2.0552 3.6156 10 14 0.6035 -4.4894 2.5436 11 1 -0.8804 -4.5051 2.4859 12 1 1.0568 -5.1343 3.8021 13 1 1.1519 -5.2329 1.3809 14 6 3.5453 -0.7831 1.2143 15 6 4.1843 -1.4347 0.1693 16 6 5.5604 -1.4979 0.1161 17 6 6.3181 -0.9139 1.1237 18 8 7.6436 -0.8151 1.3490 19 6 7.8876 -0.1390 2.4853 20 6 6.7347 0.2354 3.0564 21 6 5.6650 -0.2602 2.1819 22 6 4.2726 -0.2015 2.2156 23 1 -0.3634 0.5724 0.8534 24 1 -0.3633 0.4528 -0.9225 25 1 -0.3633 -1.0254 0.0690 26 1 1.8934 -0.5139 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.7800 -1.1723 3.5979 31 1 3.5976 -1.8932 -0.6130 32 1 6.0479 -2.0041 -0.7039 33 1 8.8703 0.0711 2.8808 34 1 6.6163 0.7903 3.9754 35 1 3.7705 0.3004 3.0294 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084394254.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:02 Heat of formation + Delta-G solvation = -10.002941 kcal Electronic energy + Delta-G solvation = -17529.484588 eV Core-core repulsion = 14878.389687 eV Total energy + Delta-G solvation = -2651.094901 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.25260 -39.76780 -36.92295 -34.41846 -33.63025 -31.65128 -30.20517 -28.47460 -27.55233 -25.18795 -23.84557 -22.64300 -22.15625 -20.76678 -18.88228 -18.28182 -17.48387 -16.96690 -16.62256 -15.68696 -15.42947 -15.03804 -14.99550 -14.76436 -14.16974 -13.94196 -13.59902 -13.46563 -13.03775 -12.96881 -12.81973 -12.65113 -12.33837 -11.97159 -11.87159 -11.79318 -11.48967 -11.07166 -11.06315 -10.65023 -10.40800 -9.17194 -9.06720 -8.49677 -6.20701 0.09128 0.58043 1.51868 1.53250 1.61477 1.76790 1.95885 2.58830 2.89758 3.28664 3.65276 3.83376 4.14580 4.20489 4.22785 4.34591 4.45685 4.47163 4.56394 4.71253 4.81773 4.89675 4.94907 5.00833 5.06905 5.09929 5.21648 5.34016 5.40338 5.53078 5.57214 5.60462 5.71827 5.84395 5.89353 6.20554 6.30594 6.33128 6.73783 7.56229 8.87501 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.020480 B = 0.008458 C = 0.007008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.863041 B = 3309.602028 C = 3994.741080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.078 4.078 3 C -0.137 4.137 4 C 0.064 3.936 5 H 0.012 0.988 6 C -0.573 4.573 7 H 0.052 0.948 8 C -0.029 4.029 9 N -0.942 5.942 10 Si 1.104 2.896 11 H -0.274 1.274 12 H -0.294 1.294 13 H -0.270 1.270 14 C -0.052 4.052 15 C -0.091 4.091 16 C -0.109 4.109 17 C 0.006 3.994 18 O -0.206 6.206 19 C 0.017 3.983 20 C -0.237 4.237 21 C -0.149 4.149 22 C -0.112 4.112 23 H 0.032 0.968 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.041 0.959 28 H 0.067 0.933 29 H 0.040 0.960 30 H 0.259 0.741 31 H 0.136 0.864 32 H 0.152 0.848 33 H 0.257 0.743 34 H 0.171 0.829 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.913 4.314 -5.649 11.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.097 4.097 3 C -0.194 4.194 4 C 0.045 3.955 5 H 0.030 0.970 6 C -0.611 4.611 7 H 0.070 0.930 8 C -0.228 4.228 9 N -0.580 5.580 10 Si 0.927 3.073 11 H -0.200 1.200 12 H -0.220 1.220 13 H -0.195 1.195 14 C -0.052 4.052 15 C -0.109 4.109 16 C -0.127 4.127 17 C -0.040 4.040 18 O -0.108 6.108 19 C -0.047 4.047 20 C -0.256 4.256 21 C -0.150 4.150 22 C -0.131 4.131 23 H 0.051 0.949 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.153 0.847 32 H 0.170 0.830 33 H 0.273 0.727 34 H 0.188 0.812 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.543 3.026 -4.825 10.267 hybrid contribution 0.260 1.309 -0.264 1.360 sum 8.803 4.334 -5.089 11.054 Atomic orbital electron populations 1.21616 0.95279 1.01351 1.00007 1.21049 0.95901 0.95060 0.97653 1.21794 1.00108 0.96263 1.01221 1.18072 0.87095 0.95727 0.94588 0.97016 1.22087 1.44443 1.00184 0.94378 0.93002 1.26964 0.95724 1.07657 0.92423 1.70863 1.43063 1.14437 1.29643 0.83100 0.76849 0.71507 0.75803 1.19984 1.21985 1.19481 1.20321 0.98182 0.93611 0.93115 1.20859 0.92649 0.98470 0.98928 1.20125 0.92229 1.02321 0.98067 1.19724 0.81548 1.03929 0.98816 1.83936 1.22888 1.63863 1.40151 1.24790 1.01428 0.94102 0.84375 1.22821 0.90930 1.08688 1.03194 1.20313 0.94565 1.02771 0.97316 1.20151 0.91603 1.02081 0.99247 0.94925 0.91917 0.93267 0.92139 0.93951 0.91378 0.94080 0.93021 0.84668 0.83030 0.72686 0.81194 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 8.98 71.98 0.65 -4.12 16 2 C -0.08 -3.10 2.36 -10.80 -0.03 -3.12 16 3 C -0.14 -4.73 8.98 71.98 0.65 -4.09 16 4 C 0.06 3.06 1.44 -12.28 -0.02 3.05 16 5 H 0.01 0.63 6.08 -2.38 -0.01 0.62 16 6 C -0.57 -30.23 6.45 25.60 0.17 -30.06 16 7 H 0.05 2.69 7.81 -2.91 -0.02 2.66 16 8 C -0.03 -1.64 5.46 84.65 0.46 -1.18 16 9 N -0.94 -57.00 13.61 21.45 0.29 -56.71 16 10 Si 1.10 50.18 29.90 68.60 2.05 52.24 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 13 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 14 C -0.05 -2.33 3.62 -20.09 -0.07 -2.41 16 15 C -0.09 -3.68 8.74 22.30 0.19 -3.48 16 16 C -0.11 -3.96 10.07 22.35 0.23 -3.73 16 17 C 0.01 0.24 7.42 22.99 0.17 0.41 16 18 O -0.21 -6.60 10.58 -8.94 -0.09 -6.70 16 19 C 0.02 0.42 11.96 66.85 0.80 1.22 16 20 C -0.24 -7.32 11.14 23.54 0.26 -7.06 16 21 C -0.15 -5.95 6.40 -20.21 -0.13 -6.08 16 22 C -0.11 -5.05 9.66 22.20 0.21 -4.83 16 23 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.05 2.04 6.99 -2.38 -0.02 2.03 16 26 H 0.06 2.33 7.28 -2.39 -0.02 2.31 16 27 H 0.04 1.50 7.31 -2.38 -0.02 1.48 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.26 15.82 6.55 -92.70 -0.61 15.21 16 31 H 0.14 5.15 7.53 -2.91 -0.02 5.13 16 32 H 0.15 4.39 8.06 -2.91 -0.02 4.37 16 33 H 0.26 3.13 8.06 -2.91 -0.02 3.11 16 34 H 0.17 4.36 8.06 -2.91 -0.02 4.34 16 35 H 0.10 4.59 7.92 -2.91 -0.02 4.57 16 Total: -1.00 -65.95 292.30 7.02 -58.93 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 1.23 Total: 17.72 kcal Atomic # 6 Polarization: -69.02 SS G_CDS: 3.54 Total: -65.48 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.29 Total: -56.71 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.09 Total: -6.70 kcal Atomic # 14 Polarization: 50.18 SS G_CDS: 2.05 Total: 52.24 kcal Total: -65.95 7.02 -58.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084394254.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.929 kcal (2) G-P(sol) polarization free energy of solvation -65.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds