Wall clock time and date at job start Mon Mar 30 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.36825 * 125.03299 * 2 1 4 4 H 0.97003 * 125.06721 * 0.02562 * 3 2 1 5 5 C 1.37691 * 109.87438 * 180.02562 * 3 2 1 6 6 C 1.39125 * 133.50647 * 180.02562 * 5 3 2 7 7 C 1.37750 * 119.77545 * 179.97438 * 6 5 3 8 8 C 1.38830 * 120.66979 * 0.02562 * 7 6 5 9 9 C 1.36627 * 120.52462 * 0.02562 * 8 7 6 10 10 C 1.39629 * 119.76240 * 359.95919 * 9 8 7 11 11 C 1.34241 * 125.03513 * 179.69811 * 2 1 3 12 12 C 1.50700 * 126.50157 * 359.97438 * 11 2 1 13 13 C 1.53007 * 109.46765 * 156.23024 * 12 11 2 14 14 N 1.46897 * 109.47120 * 276.22606 * 12 11 2 15 15 C 1.50693 * 109.47046 * 36.23123 * 12 11 2 16 16 H 1.07999 * 120.00533 * 359.97438 * 15 12 11 17 17 C 1.37879 * 119.99889 * 180.02562 * 15 12 11 18 18 N 1.31515 * 120.00013 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00057 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47115 * 59.99749 * 19 17 15 21 21 H 1.48505 * 109.46995 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47116 * 299.99595 * 19 17 15 23 23 H 1.08998 * 109.47460 * 90.02685 * 1 2 3 24 24 H 1.09003 * 109.47517 * 330.01887 * 1 2 3 25 25 H 1.09006 * 109.46819 * 210.02640 * 1 2 3 26 26 H 1.07999 * 120.11334 * 359.97438 * 6 5 3 27 27 H 1.08007 * 119.66663 * 179.97438 * 7 6 5 28 28 H 1.08001 * 119.73786 * 180.02562 * 8 7 6 29 29 H 1.08006 * 120.11524 * 179.97438 * 9 8 7 30 30 H 1.08998 * 109.47185 * 68.94142 * 13 12 11 31 31 H 1.09001 * 109.46754 * 188.94005 * 13 12 11 32 32 H 1.08996 * 109.47264 * 308.94056 * 13 12 11 33 33 H 1.00899 * 111.00375 * 296.05129 * 14 12 11 34 34 H 1.00907 * 110.99702 * 60.00379 * 14 12 11 35 35 H 0.97000 * 119.99924 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1204 0.0000 4 1 1.9622 2.0325 0.0004 5 6 3.6214 0.7603 -0.0006 6 6 4.8097 1.4838 -0.0004 7 6 6.0158 0.8183 -0.0006 8 6 6.0589 -0.5693 -0.0016 9 6 4.9041 -1.2995 -0.0028 10 6 3.6705 -0.6454 -0.0023 11 6 2.2776 -1.0992 0.0058 12 6 1.8004 -2.5286 0.0139 13 6 2.8909 -3.4336 -0.5630 14 7 1.5033 -2.9378 1.3930 15 6 0.5539 -2.6467 -0.8248 16 1 0.1477 -1.7740 -1.3143 17 6 -0.0685 -3.8688 -0.9663 18 7 0.4259 -4.9315 -0.3697 19 14 -1.6132 -4.0155 -2.0064 20 1 -1.3121 -3.6026 -3.4007 21 1 -2.0835 -5.4240 -1.9983 22 1 -2.6716 -3.1365 -1.4475 23 1 -0.3634 -0.0005 -1.0276 24 1 -0.3634 0.8902 0.5135 25 1 -0.3633 -0.8898 0.5143 26 1 4.7867 2.5636 0.0000 27 1 6.9373 1.3817 -0.0009 28 1 7.0129 -1.0757 -0.0013 29 1 4.9454 -2.3788 -0.0040 30 1 3.7339 -3.4717 0.1269 31 1 2.4920 -4.4379 -0.7051 32 1 3.2237 -3.0358 -1.5216 33 1 2.3376 -2.9291 1.9605 34 1 0.7854 -2.3548 1.7966 35 1 -0.0118 -5.7914 -0.4696 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084394302.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:12 Heat of formation + Delta-G solvation = 63.184603 kcal Electronic energy + Delta-G solvation = -17852.952432 eV Core-core repulsion = 15237.323932 eV Total energy + Delta-G solvation = -2615.628500 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.78503 -36.69833 -35.44200 -31.78301 -30.64238 -30.48550 -28.58834 -27.20568 -26.09122 -24.94962 -21.66530 -21.33059 -20.36226 -18.29325 -16.97664 -16.15223 -15.48397 -14.70717 -14.52336 -14.14507 -13.82645 -13.57730 -13.43178 -12.89512 -12.42560 -12.35883 -11.91731 -11.82219 -11.10521 -10.99011 -10.95238 -10.83312 -10.79431 -10.42355 -10.24461 -9.94024 -9.67652 -8.98925 -8.70767 -8.23081 -7.61027 -7.18759 -6.67379 -5.75422 -3.91313 1.64255 2.11418 3.35102 3.40935 3.42544 3.45539 3.65019 4.43227 4.52863 5.19853 5.41242 5.42192 5.45911 5.59610 5.84043 5.92838 5.97894 6.18059 6.26419 6.37363 6.40927 6.56375 6.69251 6.77309 6.88615 7.07816 7.12030 7.23352 7.38497 7.42527 7.64008 7.77345 7.94060 8.14392 8.18997 8.48797 8.78970 9.14157 9.28178 9.75557 11.23923 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.031645 B = 0.007983 C = 0.006970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.592051 B = 3506.514217 C = 4016.082739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.067 3.933 3 N -0.603 5.603 4 H 0.403 0.597 5 C 0.088 3.912 6 C -0.140 4.140 7 C -0.111 4.111 8 C -0.164 4.164 9 C -0.069 4.069 10 C -0.097 4.097 11 C -0.153 4.153 12 C 0.308 3.692 13 C -0.124 4.124 14 N -0.801 5.801 15 C -0.524 4.524 16 H 0.060 0.940 17 C 0.084 3.916 18 N -0.844 5.844 19 Si 0.876 3.124 20 H -0.280 1.280 21 H -0.289 1.289 22 H -0.279 1.279 23 H 0.070 0.930 24 H 0.040 0.960 25 H 0.104 0.896 26 H 0.109 0.891 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.130 0.870 30 H 0.013 0.987 31 H 0.089 0.911 32 H 0.024 0.976 33 H 0.296 0.704 34 H 0.314 0.686 35 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.362 10.157 1.598 11.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.039 4.039 3 N -0.207 5.207 4 H 0.239 0.761 5 C -0.019 4.019 6 C -0.161 4.161 7 C -0.130 4.130 8 C -0.184 4.184 9 C -0.087 4.087 10 C -0.102 4.102 11 C -0.161 4.161 12 C 0.217 3.783 13 C -0.182 4.182 14 N -0.326 5.326 15 C -0.563 4.563 16 H 0.078 0.922 17 C -0.122 4.122 18 N -0.479 5.479 19 Si 0.704 3.296 20 H -0.206 1.206 21 H -0.215 1.215 22 H -0.205 1.205 23 H 0.089 0.911 24 H 0.059 0.941 25 H 0.123 0.877 26 H 0.127 0.873 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.147 0.853 30 H 0.032 0.968 31 H 0.108 0.892 32 H 0.044 0.956 33 H 0.106 0.894 34 H 0.125 0.875 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.006 9.292 1.312 10.635 hybrid contribution -0.584 1.535 -0.433 1.699 sum 4.422 10.827 0.879 11.728 Atomic orbital electron populations 1.20609 0.87831 1.02610 1.02684 1.20213 0.93437 0.84878 1.05380 1.41745 1.03950 1.07845 1.67113 0.76132 1.18251 0.84568 0.94606 1.04520 1.19862 0.90036 0.98152 1.08093 1.20624 0.96143 0.94448 1.01807 1.20544 0.97766 0.93835 1.06221 1.20766 0.90545 1.00353 0.97013 1.19378 0.94166 0.91520 1.05166 1.22150 0.88866 0.98475 1.06629 1.16860 0.93451 0.81056 0.86912 1.21863 0.95719 1.03899 0.96734 1.59371 1.10445 1.59669 1.03108 1.21071 1.10107 0.94521 1.30587 0.92161 1.24905 0.96510 0.96093 0.94659 1.70016 1.38251 0.98949 1.40689 0.86965 0.84527 0.76967 0.81165 1.20628 1.21486 1.20454 0.91111 0.94073 0.87737 0.87307 0.86739 0.86839 0.85276 0.96835 0.89206 0.95645 0.89399 0.87472 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 8.51 36.00 0.31 -1.08 16 2 C 0.07 1.28 6.90 -81.77 -0.56 0.72 16 3 N -0.60 -10.06 6.07 -6.96 -0.04 -10.10 16 4 H 0.40 5.27 8.96 -40.82 -0.37 4.90 16 5 C 0.09 1.59 7.28 -83.99 -0.61 0.98 16 6 C -0.14 -2.16 10.08 -39.43 -0.40 -2.56 16 7 C -0.11 -1.62 10.01 -39.54 -0.40 -2.02 16 8 C -0.16 -2.58 9.97 -39.94 -0.40 -2.98 16 9 C -0.07 -1.27 9.29 -39.64 -0.37 -1.64 16 10 C -0.10 -1.96 6.04 -105.14 -0.63 -2.59 16 11 C -0.15 -3.30 5.22 -102.71 -0.54 -3.83 16 12 C 0.31 7.32 0.64 -133.91 -0.09 7.24 16 13 C -0.12 -3.00 7.23 37.16 0.27 -2.74 16 14 N -0.80 -18.55 8.17 -1.14 -0.01 -18.55 16 15 C -0.52 -13.45 6.37 -34.44 -0.22 -13.67 16 16 H 0.06 1.52 4.99 -52.49 -0.26 1.25 16 17 C 0.08 2.23 5.20 -17.82 -0.09 2.14 16 18 N -0.84 -23.35 10.78 55.43 0.60 -22.76 16 19 Si 0.88 20.56 29.54 -169.99 -5.02 15.54 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H 0.07 1.24 7.24 -51.93 -0.38 0.86 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.10 2.01 6.18 -51.93 -0.32 1.69 16 26 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 27 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 28 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 29 H 0.13 2.39 5.26 -52.48 -0.28 2.11 16 30 H 0.01 0.29 5.76 -51.93 -0.30 -0.01 16 31 H 0.09 2.41 5.88 -51.93 -0.31 2.11 16 32 H 0.02 0.60 8.11 -51.93 -0.42 0.18 16 33 H 0.30 6.45 8.96 -39.29 -0.35 6.10 16 34 H 0.31 6.97 8.46 -39.29 -0.33 6.64 16 35 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 279.04 15.07 4.21 4.21 Total: -1.00 -28.89 279.04 -8.14 -37.02 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -4.14 Total: 16.68 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -3.73 Total: -22.04 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: 0.55 Total: -51.41 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.89 -8.14 -37.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084394302.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.206 kcal (2) G-P(sol) polarization free energy of solvation -28.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds