Wall clock time and date at job start Mon Mar 30 2020 06:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 110.99538 * 2 1 4 4 C 1.50698 * 109.47277 * 179.97438 * 3 2 1 5 5 C 1.34295 * 126.47464 * 260.02642 * 4 3 2 6 6 N 1.37004 * 109.93463 * 179.97438 * 5 4 3 7 7 C 1.37206 * 125.09380 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99818 * 158.37523 * 7 6 5 9 9 C 1.38852 * 119.99972 * 338.64431 * 7 6 5 10 10 N 1.31434 * 119.99693 * 160.54875 * 9 7 6 11 11 Si 1.86802 * 120.00307 * 340.55568 * 9 7 6 12 12 H 1.48500 * 109.46830 * 94.08902 * 11 9 7 13 13 H 1.48494 * 109.46962 * 214.09596 * 11 9 7 14 14 H 1.48500 * 109.46641 * 334.09271 * 11 9 7 15 15 C 1.38111 * 109.81415 * 0.26932 * 6 5 4 16 16 C 1.38960 * 133.42242 * 179.73812 * 15 6 5 17 17 C 1.37898 * 119.92639 * 179.97438 * 16 15 6 18 18 C 1.38753 * 120.64429 * 359.97438 * 17 16 15 19 19 C 1.50693 * 119.81634 * 180.02562 * 18 17 16 20 20 C 1.37785 * 120.36196 * 359.64496 * 18 17 16 21 21 C 1.39507 * 119.65499 * 0.57024 * 20 18 17 22 22 H 1.09004 * 109.46436 * 179.97438 * 1 2 3 23 23 H 1.08988 * 109.47422 * 299.99667 * 1 2 3 24 24 H 1.09002 * 109.47051 * 60.00439 * 1 2 3 25 25 H 1.00900 * 111.00295 * 123.94807 * 2 1 3 26 26 H 1.09003 * 109.47247 * 59.99917 * 3 2 1 27 27 H 1.08998 * 109.47165 * 300.00319 * 3 2 1 28 28 H 1.08001 * 125.03972 * 359.97438 * 5 4 3 29 29 H 0.97000 * 120.00063 * 180.02562 * 10 9 7 30 30 H 1.08004 * 120.03675 * 0.02562 * 16 15 6 31 31 H 1.07999 * 119.67601 * 179.97438 * 17 16 15 32 32 H 1.09001 * 109.47423 * 90.00013 * 19 18 17 33 33 H 1.08998 * 109.47090 * 209.99962 * 19 18 17 34 34 H 1.08999 * 109.47101 * 329.99512 * 19 18 17 35 35 H 1.08005 * 120.16628 * 179.87145 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5018 1.3315 0.0006 5 6 4.3044 1.4974 1.0645 6 7 5.6157 1.3943 0.6810 7 6 6.6946 1.5127 1.5203 8 1 7.6467 1.0872 1.2392 9 6 6.5610 2.1745 2.7337 10 7 7.4374 1.9727 3.6922 11 14 5.1358 3.3515 3.0038 12 1 4.0144 2.6292 3.6565 13 1 5.5767 4.4712 3.8737 14 1 4.6835 3.8894 1.6956 15 6 5.6889 1.1589 -0.6779 16 6 6.7471 0.9820 -1.5610 17 6 6.4969 0.7574 -2.8983 18 6 5.1950 0.7052 -3.3752 19 6 4.9430 0.4581 -4.8402 20 6 4.1311 0.8703 -2.5153 21 6 4.3684 1.1028 -1.1604 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8307 -0.5260 0.7814 26 1 1.6458 1.8949 0.8900 27 1 1.6458 1.8948 -0.8899 28 1 3.9664 1.6844 2.0731 29 1 7.3440 2.4348 4.5399 30 1 7.7644 1.0194 -1.2001 31 1 7.3224 0.6208 -3.5812 32 1 4.8587 -0.6139 -5.0187 33 1 4.0167 0.9498 -5.1376 34 1 5.7711 0.8597 -5.4242 35 1 3.1190 0.8311 -2.8903 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084840799.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:22 Heat of formation + Delta-G solvation = 55.654548 kcal Electronic energy + Delta-G solvation = -17253.122458 eV Core-core repulsion = 14637.167430 eV Total energy + Delta-G solvation = -2615.955028 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.40339 -36.72435 -35.73640 -33.30014 -31.48147 -30.83169 -28.67092 -26.90152 -25.98857 -23.94414 -22.70581 -21.77678 -20.01304 -19.19140 -17.56042 -15.98614 -15.64842 -15.33086 -14.42184 -14.22943 -14.11082 -13.61628 -13.57433 -13.20391 -12.98129 -12.86585 -12.69440 -12.14171 -11.67958 -11.58853 -11.46669 -11.45759 -11.13143 -10.90600 -10.50415 -10.29534 -10.09005 -9.85855 -9.24637 -8.64176 -8.09384 -7.16521 -6.90503 -6.87948 -4.33138 2.01429 2.49377 2.88080 3.05122 3.13720 3.52797 3.82484 4.29756 4.55237 4.88687 4.95065 5.43107 5.48467 5.58099 5.60917 5.68715 5.82603 5.90221 5.93877 5.98206 6.04689 6.05304 6.17262 6.25961 6.41743 6.63543 6.80095 6.82111 6.96667 7.25235 7.31548 7.38636 7.52145 7.62091 7.73910 7.86075 7.95003 8.20608 8.81633 9.12346 10.18612 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.016627 B = 0.010052 C = 0.006675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.585113 B = 2784.961456 C = 4193.589414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.689 5.689 3 C 0.148 3.852 4 C -0.221 4.221 5 C 0.011 3.989 6 N -0.290 5.290 7 C -0.342 4.342 8 H 0.121 0.879 9 C 0.068 3.932 10 N -0.836 5.836 11 Si 0.887 3.113 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.248 1.248 15 C 0.057 3.943 16 C -0.101 4.101 17 C -0.129 4.129 18 C -0.140 4.140 19 C -0.097 4.097 20 C -0.070 4.070 21 C -0.092 4.092 22 H 0.061 0.939 23 H 0.015 0.985 24 H 0.060 0.940 25 H 0.342 0.658 26 H 0.023 0.977 27 H 0.069 0.931 28 H 0.145 0.855 29 H 0.285 0.715 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.179 -0.840 -7.157 10.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.320 5.320 3 C 0.020 3.980 4 C -0.229 4.229 5 C -0.124 4.124 6 N 0.048 4.952 7 C -0.469 4.469 8 H 0.138 0.862 9 C -0.143 4.143 10 N -0.466 5.466 11 Si 0.714 3.286 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.171 1.171 15 C -0.053 4.053 16 C -0.121 4.121 17 C -0.149 4.149 18 C -0.141 4.141 19 C -0.154 4.154 20 C -0.089 4.089 21 C -0.097 4.097 22 H 0.080 0.920 23 H 0.033 0.967 24 H 0.079 0.921 25 H 0.159 0.841 26 H 0.041 0.959 27 H 0.087 0.913 28 H 0.162 0.838 29 H 0.095 0.905 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.715 -0.827 -7.355 10.691 hybrid contribution -0.614 0.865 1.522 1.855 sum -8.329 0.038 -5.832 10.168 Atomic orbital electron populations 1.22175 0.89050 1.01178 0.99814 1.60509 1.06144 1.15103 1.50263 1.19962 0.90364 0.88432 0.99276 1.19456 0.92795 1.18661 0.92031 1.21310 0.83687 1.08941 0.98420 1.40305 1.04403 1.46188 1.04348 1.19451 0.91406 1.37628 0.98452 0.86174 1.25283 0.98003 0.96673 0.94361 1.69723 1.35544 1.37737 1.03631 0.86705 0.80902 0.81079 0.79952 1.19716 1.21001 1.17145 1.18248 0.95016 1.08469 0.83614 1.19922 0.96736 1.03262 0.92168 1.20367 0.95612 1.04795 0.94173 1.19341 0.93131 1.06655 0.94986 1.20567 1.01079 1.00812 0.92906 1.20093 0.97272 1.00354 0.91169 1.18673 0.91610 1.06588 0.92855 0.91975 0.96698 0.92114 0.84087 0.95867 0.91290 0.83808 0.90464 0.87150 0.87320 0.92540 0.92674 0.92685 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.70 60.07 0.64 0.99 16 2 N -0.69 -10.97 6.85 -122.42 -0.84 -11.81 16 3 C 0.15 2.60 6.21 -4.97 -0.03 2.57 16 4 C -0.22 -4.74 5.83 -102.61 -0.60 -5.34 16 5 C 0.01 0.26 8.26 -16.63 -0.14 0.12 16 6 N -0.29 -7.34 2.76 -59.73 -0.16 -7.50 16 7 C -0.34 -9.19 10.34 -14.92 -0.15 -9.35 16 8 H 0.12 3.36 8.06 -52.48 -0.42 2.94 16 9 C 0.07 1.78 5.44 -17.49 -0.10 1.69 16 10 N -0.84 -22.48 13.96 55.49 0.77 -21.71 16 11 Si 0.89 20.10 24.67 -169.99 -4.19 15.90 16 12 H -0.27 -5.81 6.67 56.52 0.38 -5.43 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.25 -5.77 6.72 56.52 0.38 -5.39 16 15 C 0.06 1.37 6.75 -83.84 -0.57 0.80 16 16 C -0.10 -2.16 9.95 -39.44 -0.39 -2.56 16 17 C -0.13 -2.41 9.67 -39.52 -0.38 -2.79 16 18 C -0.14 -2.52 5.88 -104.60 -0.62 -3.13 16 19 C -0.10 -1.34 10.00 36.00 0.36 -0.98 16 20 C -0.07 -1.38 9.74 -39.27 -0.38 -1.76 16 21 C -0.09 -2.04 6.35 -105.09 -0.67 -2.71 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.01 0.17 8.14 -51.94 -0.42 -0.25 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.34 5.42 8.81 -39.29 -0.35 5.07 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.14 3.25 4.38 -52.49 -0.23 3.02 16 29 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.11 2.28 8.06 -52.48 -0.42 1.85 16 31 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 35 H 0.11 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 292.59 15.07 4.41 4.41 Total: -1.00 -27.85 292.59 -7.86 -35.71 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -4.82 Total: 7.46 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -3.02 Total: -22.46 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: -0.23 Total: -41.02 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.19 Total: 15.90 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.85 -7.86 -35.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084840799.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.361 kcal (2) G-P(sol) polarization free energy of solvation -27.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds