Wall clock time and date at job start Mon Mar 30 2020 06:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 110.99538 * 2 1 4 4 C 1.50698 * 109.47277 * 179.97438 * 3 2 1 5 5 C 1.34295 * 126.47464 * 260.02642 * 4 3 2 6 6 N 1.37004 * 109.93463 * 179.97438 * 5 4 3 7 7 C 1.37206 * 125.09380 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99818 * 158.37523 * 7 6 5 9 9 C 1.38852 * 119.99972 * 338.64431 * 7 6 5 10 10 N 1.31434 * 119.99693 * 160.54875 * 9 7 6 11 11 Si 1.86802 * 120.00307 * 340.55568 * 9 7 6 12 12 H 1.48500 * 109.46830 * 94.08902 * 11 9 7 13 13 H 1.48494 * 109.46962 * 214.09596 * 11 9 7 14 14 H 1.48500 * 109.46641 * 334.09271 * 11 9 7 15 15 C 1.38111 * 109.81415 * 0.26932 * 6 5 4 16 16 C 1.38960 * 133.42242 * 179.73812 * 15 6 5 17 17 C 1.37898 * 119.92639 * 179.97438 * 16 15 6 18 18 C 1.38753 * 120.64429 * 359.97438 * 17 16 15 19 19 C 1.50693 * 119.81634 * 180.02562 * 18 17 16 20 20 C 1.37785 * 120.36196 * 359.64496 * 18 17 16 21 21 C 1.39507 * 119.65499 * 0.57024 * 20 18 17 22 22 H 1.09004 * 109.46436 * 179.97438 * 1 2 3 23 23 H 1.08988 * 109.47422 * 299.99667 * 1 2 3 24 24 H 1.09002 * 109.47051 * 60.00439 * 1 2 3 25 25 H 1.00900 * 111.00295 * 123.94807 * 2 1 3 26 26 H 1.09003 * 109.47247 * 59.99917 * 3 2 1 27 27 H 1.08998 * 109.47165 * 300.00319 * 3 2 1 28 28 H 1.08001 * 125.03972 * 359.97438 * 5 4 3 29 29 H 0.97000 * 120.00063 * 180.02562 * 10 9 7 30 30 H 1.08004 * 120.03675 * 0.02562 * 16 15 6 31 31 H 1.07999 * 119.67601 * 179.97438 * 17 16 15 32 32 H 1.09001 * 109.47423 * 90.00013 * 19 18 17 33 33 H 1.08998 * 109.47090 * 209.99962 * 19 18 17 34 34 H 1.08999 * 109.47101 * 329.99512 * 19 18 17 35 35 H 1.08005 * 120.16628 * 179.87145 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5018 1.3315 0.0006 5 6 4.3044 1.4974 1.0645 6 7 5.6157 1.3943 0.6810 7 6 6.6946 1.5127 1.5203 8 1 7.6467 1.0872 1.2392 9 6 6.5610 2.1745 2.7337 10 7 7.4374 1.9727 3.6922 11 14 5.1358 3.3515 3.0038 12 1 4.0144 2.6292 3.6565 13 1 5.5767 4.4712 3.8737 14 1 4.6835 3.8894 1.6956 15 6 5.6889 1.1589 -0.6779 16 6 6.7471 0.9820 -1.5610 17 6 6.4969 0.7574 -2.8983 18 6 5.1950 0.7052 -3.3752 19 6 4.9430 0.4581 -4.8402 20 6 4.1311 0.8703 -2.5153 21 6 4.3684 1.1028 -1.1604 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8307 -0.5260 0.7814 26 1 1.6458 1.8949 0.8900 27 1 1.6458 1.8948 -0.8899 28 1 3.9664 1.6844 2.0731 29 1 7.3440 2.4348 4.5399 30 1 7.7644 1.0194 -1.2001 31 1 7.3224 0.6208 -3.5812 32 1 4.8587 -0.6139 -5.0187 33 1 4.0167 0.9498 -5.1376 34 1 5.7711 0.8597 -5.4242 35 1 3.1190 0.8311 -2.8903 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084840799.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:22 Heat of formation + Delta-G solvation = 38.762621 kcal Electronic energy + Delta-G solvation = -17253.854947 eV Core-core repulsion = 14637.167430 eV Total energy + Delta-G solvation = -2616.687517 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.10616 -38.29422 -37.04441 -35.15034 -33.08879 -32.36654 -30.20611 -28.47633 -27.39130 -25.45954 -24.06891 -23.40328 -21.65200 -20.85617 -19.36534 -17.73816 -17.28361 -16.71757 -16.07316 -15.72415 -15.55221 -15.14040 -14.96776 -14.85955 -14.57276 -14.28516 -14.08102 -13.67627 -13.15626 -13.00078 -12.82901 -12.72214 -12.57354 -12.45853 -12.14003 -11.90793 -11.84312 -11.45058 -11.07497 -10.33052 -9.29545 -8.87571 -8.80810 -8.58694 -6.32215 0.38328 0.87351 1.08409 1.23351 1.33361 1.80597 1.97455 2.54825 2.77628 3.21036 3.62776 3.88538 4.10057 4.21386 4.29340 4.35613 4.49892 4.61452 4.69737 4.71903 4.74698 4.85446 4.99741 5.03668 5.07731 5.12730 5.19108 5.30260 5.39670 5.49267 5.74040 5.75713 5.97750 6.11327 6.17929 6.25507 6.44595 6.50023 6.93906 7.26488 8.27377 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.016627 B = 0.010052 C = 0.006675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.585113 B = 2784.961456 C = 4193.589414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.700 5.700 3 C 0.152 3.848 4 C -0.207 4.207 5 C -0.011 4.011 6 N -0.318 5.318 7 C -0.362 4.362 8 H 0.086 0.914 9 C 0.029 3.971 10 N -0.878 5.878 11 Si 0.946 3.054 12 H -0.249 1.249 13 H -0.274 1.274 14 H -0.260 1.260 15 C 0.028 3.972 16 C -0.135 4.135 17 C -0.113 4.113 18 C -0.134 4.134 19 C -0.094 4.094 20 C -0.074 4.074 21 C -0.111 4.111 22 H 0.077 0.923 23 H 0.023 0.977 24 H 0.069 0.931 25 H 0.339 0.661 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.148 0.852 29 H 0.292 0.708 30 H 0.101 0.899 31 H 0.143 0.857 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.855 -0.822 -9.501 14.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.331 5.331 3 C 0.023 3.977 4 C -0.215 4.215 5 C -0.144 4.144 6 N 0.017 4.983 7 C -0.489 4.489 8 H 0.104 0.896 9 C -0.178 4.178 10 N -0.510 5.510 11 Si 0.770 3.230 12 H -0.175 1.175 13 H -0.200 1.200 14 H -0.184 1.184 15 C -0.082 4.082 16 C -0.155 4.155 17 C -0.133 4.133 18 C -0.135 4.135 19 C -0.151 4.151 20 C -0.093 4.093 21 C -0.117 4.117 22 H 0.096 0.904 23 H 0.042 0.958 24 H 0.088 0.912 25 H 0.156 0.844 26 H 0.051 0.949 27 H 0.099 0.901 28 H 0.165 0.835 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.160 0.840 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.409 -0.822 -9.703 14.253 hybrid contribution 0.192 0.742 1.978 2.121 sum -10.217 -0.081 -7.725 12.809 Atomic orbital electron populations 1.22250 0.86606 1.02521 1.00648 1.60456 1.08404 1.13864 1.50363 1.19983 0.87608 0.89760 1.00343 1.19985 0.94784 1.15750 0.91003 1.21588 0.83451 1.10020 0.99312 1.40284 1.04430 1.48855 1.04772 1.19225 0.91310 1.38724 0.99668 0.89646 1.25933 1.00539 0.97585 0.93765 1.69782 1.37627 1.39237 1.04358 0.85803 0.78658 0.79204 0.79325 1.17471 1.20000 1.18391 1.18825 0.96750 1.08980 0.83645 1.20145 0.96145 1.05627 0.93568 1.20826 0.97396 1.01867 0.93195 1.19904 0.92191 1.04080 0.97361 1.20638 1.02748 1.02178 0.89497 1.20430 0.98997 0.99718 0.90123 1.19074 0.90961 1.07268 0.94365 0.90447 0.95795 0.91234 0.84365 0.94924 0.90063 0.83514 0.89810 0.88065 0.83973 0.90975 0.91053 0.90801 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.70 127.69 1.37 1.98 16 2 N -0.70 -20.48 6.85 -541.22 -3.70 -24.18 16 3 C 0.15 4.95 6.21 85.56 0.53 5.48 16 4 C -0.21 -8.69 5.83 -18.56 -0.11 -8.80 16 5 C -0.01 -0.54 8.26 82.98 0.69 0.15 16 6 N -0.32 -16.79 2.76 -342.90 -0.95 -17.73 16 7 C -0.36 -20.75 10.34 84.00 0.87 -19.88 16 8 H 0.09 5.26 8.06 -2.91 -0.02 5.24 16 9 C 0.03 1.59 5.44 84.90 0.46 2.05 16 10 N -0.88 -49.38 13.96 21.64 0.30 -49.08 16 11 Si 0.95 42.39 24.67 68.60 1.69 44.08 16 12 H -0.25 -10.19 6.67 99.48 0.66 -9.53 16 13 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 14 H -0.26 -11.99 6.72 99.48 0.67 -11.33 16 15 C 0.03 1.37 6.75 38.93 0.26 1.63 16 16 C -0.13 -5.91 9.95 22.36 0.22 -5.68 16 17 C -0.11 -4.00 9.67 22.31 0.22 -3.79 16 18 C -0.13 -4.38 5.88 -19.85 -0.12 -4.50 16 19 C -0.09 -2.12 10.00 71.23 0.71 -1.41 16 20 C -0.07 -2.71 9.74 22.47 0.22 -2.49 16 21 C -0.11 -4.88 6.35 -20.17 -0.13 -5.00 16 22 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 23 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.34 10.16 8.81 -89.69 -0.79 9.37 16 26 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.15 6.63 4.38 -2.91 -0.01 6.61 16 29 H 0.29 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 31 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 34 H 0.07 1.43 8.08 -2.39 -0.02 1.41 16 35 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -62.98 292.59 2.75 -60.23 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.22 Total: 26.94 kcal Atomic # 6 Polarization: -45.45 SS G_CDS: 5.19 Total: -40.26 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -4.35 Total: -90.99 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.69 Total: 44.08 kcal Total: -62.98 2.75 -60.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084840799.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.989 kcal (2) G-P(sol) polarization free energy of solvation -62.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds