Wall clock time and date at job start Mon Mar 30 2020 05:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47447 * 2 1 4 4 C 1.50699 * 109.47020 * 119.99567 * 2 1 3 5 5 H 1.08000 * 120.00515 * 114.36648 * 4 2 1 6 6 C 1.37880 * 120.00139 * 294.37425 * 4 2 1 7 7 N 1.31513 * 120.00295 * 157.06556 * 6 4 2 8 8 Si 1.86794 * 120.00038 * 337.06473 * 6 4 2 9 9 H 1.48503 * 109.47443 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.47088 * 300.00213 * 8 6 4 11 11 H 1.48507 * 109.47260 * 59.99914 * 8 6 4 12 12 C 1.50696 * 109.47382 * 239.99749 * 2 1 3 13 13 O 1.21257 * 119.99673 * 269.99907 * 12 2 1 14 14 C 1.47164 * 120.00106 * 90.00555 * 12 2 1 15 15 C 1.39851 * 120.17218 * 359.72183 * 14 12 2 16 16 C 1.37885 * 119.82688 * 179.70280 * 15 14 12 17 17 C 1.38413 * 120.17057 * 0.57788 * 16 15 14 18 18 C 1.50695 * 119.82811 * 179.69602 * 17 16 15 19 19 C 1.53008 * 117.49792 * 8.64641 * 18 17 16 20 20 C 1.53000 * 60.00018 * 252.50903 * 19 18 17 21 21 C 1.38408 * 120.34609 * 359.72199 * 17 16 15 22 22 C 1.37889 * 120.17218 * 359.97438 * 21 17 16 23 23 H 1.09002 * 109.46756 * 53.17093 * 1 2 3 24 24 H 1.08998 * 109.47303 * 173.17000 * 1 2 3 25 25 H 1.09005 * 109.47334 * 293.17507 * 1 2 3 26 26 H 0.97001 * 119.99681 * 354.93400 * 7 6 4 27 27 H 1.08006 * 120.08883 * 359.97438 * 15 14 12 28 28 H 1.07998 * 119.91595 * 180.31583 * 16 15 14 29 29 H 1.08995 * 115.54999 * 154.34919 * 18 17 16 30 30 H 1.09006 * 117.49637 * 0.02562 * 19 18 17 31 31 H 1.08993 * 117.49976 * 145.01776 * 19 18 17 32 32 H 1.08997 * 117.49762 * 252.51512 * 20 19 18 33 33 H 1.09004 * 117.51895 * 107.47689 * 20 19 18 34 34 H 1.07991 * 119.91253 * 180.02562 * 21 17 16 35 35 H 1.07998 * 120.08229 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5761 -1.6384 1.1342 6 6 1.7974 -0.1754 2.4795 7 7 1.8112 -0.9521 3.5407 8 14 1.4599 1.6524 2.6643 9 1 1.2406 1.9730 4.0976 10 1 2.6223 2.4243 2.1561 11 1 0.2477 2.0132 1.8858 12 6 2.0323 -0.7104 -1.2304 13 8 2.2344 -1.9057 -1.2002 14 6 2.2778 0.0464 -2.4684 15 6 2.0404 1.4240 -2.5088 16 6 2.2787 2.1272 -3.6708 17 6 2.7401 1.4710 -4.7987 18 6 2.9913 2.2459 -6.0665 19 6 2.9141 3.7721 -5.9887 20 6 1.8053 2.9848 -6.6897 21 6 2.9714 0.1067 -4.7686 22 6 2.7439 -0.6094 -3.6124 23 1 -0.3633 0.6160 -0.8226 24 1 -0.3634 -1.0203 -0.1222 25 1 -0.3634 0.4044 0.9448 26 1 1.9132 -1.9113 3.4383 27 1 1.6757 1.9366 -1.6309 28 1 2.1008 3.1919 -3.7020 29 1 3.7269 1.8129 -6.7442 30 1 2.6820 4.2155 -5.0203 31 1 3.5991 4.3433 -6.6152 32 1 1.7608 3.0380 -7.7775 33 1 0.8431 2.9099 -6.1829 34 1 3.3318 -0.3981 -5.6526 35 1 2.9253 -1.6738 -3.5903 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087012556.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:53 Heat of formation + Delta-G solvation = 2.592790 kcal Electronic energy + Delta-G solvation = -16819.018214 eV Core-core repulsion = 14168.469505 eV Total energy + Delta-G solvation = -2650.548709 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.86945 -38.37621 -36.42133 -33.87027 -31.63850 -30.64788 -30.34063 -25.18571 -24.75830 -22.92706 -22.37296 -22.14602 -20.34389 -18.74472 -17.45683 -16.86476 -15.91377 -15.15931 -14.71146 -14.60843 -14.07035 -13.68080 -13.46704 -13.34768 -12.84652 -12.63610 -12.44455 -11.80849 -11.77161 -11.65777 -11.39510 -11.08941 -10.91230 -10.75363 -10.54863 -10.49172 -10.15206 -9.85533 -8.98135 -8.85573 -8.64887 -8.44563 -8.18080 -6.48113 -4.05559 0.96778 1.52128 2.98008 3.35697 3.40573 3.58275 3.67118 4.14331 4.36978 4.49141 4.63958 4.74791 4.80408 4.89869 5.05764 5.14489 5.20229 5.38893 5.50872 5.59362 5.62095 5.85977 5.86918 5.92730 6.08658 6.17954 6.28004 6.45049 6.54901 6.57472 6.59912 6.68585 6.99888 7.05056 7.24457 7.95716 8.40922 8.52589 8.95730 9.59957 10.90279 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.032579 B = 0.005745 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.245603 B = 4872.530076 C = 5442.320591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.019 4.019 3 H 0.041 0.959 4 C -0.600 4.600 5 H 0.067 0.933 6 C 0.038 3.962 7 N -0.896 5.896 8 Si 1.033 2.967 9 H -0.283 1.283 10 H -0.282 1.282 11 H -0.275 1.275 12 C 0.405 3.595 13 O -0.456 6.456 14 C -0.158 4.158 15 C -0.068 4.068 16 C -0.137 4.137 17 C -0.037 4.037 18 C -0.119 4.119 19 C -0.177 4.177 20 C -0.169 4.169 21 C -0.130 4.130 22 C -0.067 4.067 23 H 0.028 0.972 24 H 0.047 0.953 25 H 0.061 0.939 26 H 0.271 0.729 27 H 0.136 0.864 28 H 0.125 0.875 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.123 0.877 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.074 9.722 -18.892 21.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.039 4.039 3 H 0.059 0.941 4 C -0.637 4.637 5 H 0.086 0.914 6 C -0.168 4.168 7 N -0.529 5.529 8 Si 0.861 3.139 9 H -0.209 1.209 10 H -0.208 1.208 11 H -0.201 1.201 12 C 0.283 3.717 13 O -0.331 6.331 14 C -0.159 4.159 15 C -0.086 4.086 16 C -0.155 4.155 17 C -0.037 4.037 18 C -0.137 4.137 19 C -0.214 4.214 20 C -0.206 4.206 21 C -0.148 4.148 22 C -0.086 4.086 23 H 0.047 0.953 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.154 0.846 28 H 0.143 0.857 29 H 0.130 0.870 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.141 0.859 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.083 10.256 -17.727 20.480 hybrid contribution 0.352 -1.165 -1.176 1.692 sum 0.269 9.091 -18.903 20.977 Atomic orbital electron populations 1.22039 0.96540 1.00548 1.00312 1.19408 0.93888 0.97106 0.93467 0.94092 1.21844 1.40929 1.10931 0.90014 0.91448 1.25715 0.93415 1.05728 0.91990 1.70822 1.43629 1.06598 1.31811 0.84197 0.77195 0.76107 0.76414 1.20896 1.20802 1.20148 1.22961 0.72528 0.88395 0.87856 1.90375 1.39967 1.17497 1.85239 1.21098 1.03030 0.95121 0.96646 1.21598 0.95705 0.93269 0.98029 1.20988 1.01809 0.99965 0.92708 1.19287 0.97547 0.93435 0.93436 1.21066 1.02025 0.93489 0.97140 1.23081 1.02267 0.93153 1.02859 1.23028 0.93996 1.03601 0.99984 1.20845 1.02449 0.93341 0.98135 1.21437 0.95019 1.00433 0.91674 0.95316 0.93368 0.91978 0.91898 0.84599 0.85684 0.86968 0.88126 0.88481 0.88525 0.88450 0.85915 0.85141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.90 37.15 0.33 -2.65 16 2 C -0.02 -0.46 1.66 -92.93 -0.15 -0.61 16 3 H 0.04 0.92 5.06 -51.93 -0.26 0.66 16 4 C -0.60 -17.34 8.57 -34.44 -0.30 -17.64 16 5 H 0.07 2.19 7.32 -52.49 -0.38 1.80 16 6 C 0.04 1.09 5.20 -17.82 -0.09 0.99 16 7 N -0.90 -27.65 13.70 55.43 0.76 -26.90 16 8 Si 1.03 24.38 26.44 -169.99 -4.49 19.89 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 11 H -0.28 -5.87 6.13 56.52 0.35 -5.52 16 12 C 0.41 9.23 6.16 -30.69 -0.19 9.04 16 13 O -0.46 -11.72 15.92 5.58 0.09 -11.63 16 14 C -0.16 -2.91 5.87 -105.07 -0.62 -3.53 16 15 C -0.07 -1.07 9.36 -39.11 -0.37 -1.44 16 16 C -0.14 -1.79 9.28 -39.65 -0.37 -2.16 16 17 C -0.04 -0.46 5.62 -104.50 -0.59 -1.05 16 18 C -0.12 -1.14 6.04 -91.77 -0.55 -1.69 16 19 C -0.18 -1.44 9.85 -26.73 -0.26 -1.70 16 20 C -0.17 -1.39 10.16 -26.73 -0.27 -1.66 16 21 C -0.13 -1.72 9.71 -39.65 -0.39 -2.11 16 22 C -0.07 -1.10 9.60 -39.11 -0.38 -1.47 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.06 1.39 5.45 -51.93 -0.28 1.10 16 26 H 0.27 8.43 8.73 -40.82 -0.36 8.07 16 27 H 0.14 2.06 6.37 -52.48 -0.33 1.73 16 28 H 0.13 1.33 6.00 -52.49 -0.31 1.01 16 29 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.10 0.82 6.16 -51.93 -0.32 0.50 16 31 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.13 2.11 7.65 -52.49 -0.40 1.71 16 LS Contribution 292.02 15.07 4.40 4.40 Total: -1.00 -32.15 292.02 -7.90 -40.05 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -4.47 Total: 1.85 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: -4.19 Total: -27.67 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 0.76 Total: -26.90 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -4.49 Total: 19.89 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.15 -7.90 -40.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087012556.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.644 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds