Wall clock time and date at job start Mon Mar 30 2020 05:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47447 * 2 1 4 4 C 1.50699 * 109.47020 * 119.99567 * 2 1 3 5 5 H 1.08000 * 120.00515 * 114.36648 * 4 2 1 6 6 C 1.37880 * 120.00139 * 294.37425 * 4 2 1 7 7 N 1.31513 * 120.00295 * 157.06556 * 6 4 2 8 8 Si 1.86794 * 120.00038 * 337.06473 * 6 4 2 9 9 H 1.48503 * 109.47443 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.47088 * 300.00213 * 8 6 4 11 11 H 1.48507 * 109.47260 * 59.99914 * 8 6 4 12 12 C 1.50696 * 109.47382 * 239.99749 * 2 1 3 13 13 O 1.21257 * 119.99673 * 269.99907 * 12 2 1 14 14 C 1.47164 * 120.00106 * 90.00555 * 12 2 1 15 15 C 1.39851 * 120.17218 * 359.72183 * 14 12 2 16 16 C 1.37885 * 119.82688 * 179.70280 * 15 14 12 17 17 C 1.38413 * 120.17057 * 0.57788 * 16 15 14 18 18 C 1.50695 * 119.82811 * 179.69602 * 17 16 15 19 19 C 1.53008 * 117.49792 * 8.64641 * 18 17 16 20 20 C 1.53000 * 60.00018 * 252.50903 * 19 18 17 21 21 C 1.38408 * 120.34609 * 359.72199 * 17 16 15 22 22 C 1.37889 * 120.17218 * 359.97438 * 21 17 16 23 23 H 1.09002 * 109.46756 * 53.17093 * 1 2 3 24 24 H 1.08998 * 109.47303 * 173.17000 * 1 2 3 25 25 H 1.09005 * 109.47334 * 293.17507 * 1 2 3 26 26 H 0.97001 * 119.99681 * 354.93400 * 7 6 4 27 27 H 1.08006 * 120.08883 * 359.97438 * 15 14 12 28 28 H 1.07998 * 119.91595 * 180.31583 * 16 15 14 29 29 H 1.08995 * 115.54999 * 154.34919 * 18 17 16 30 30 H 1.09006 * 117.49637 * 0.02562 * 19 18 17 31 31 H 1.08993 * 117.49976 * 145.01776 * 19 18 17 32 32 H 1.08997 * 117.49762 * 252.51512 * 20 19 18 33 33 H 1.09004 * 117.51895 * 107.47689 * 20 19 18 34 34 H 1.07991 * 119.91253 * 180.02562 * 21 17 16 35 35 H 1.07998 * 120.08229 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5761 -1.6384 1.1342 6 6 1.7974 -0.1754 2.4795 7 7 1.8112 -0.9521 3.5407 8 14 1.4599 1.6524 2.6643 9 1 1.2406 1.9730 4.0976 10 1 2.6223 2.4243 2.1561 11 1 0.2477 2.0132 1.8858 12 6 2.0323 -0.7104 -1.2304 13 8 2.2344 -1.9057 -1.2002 14 6 2.2778 0.0464 -2.4684 15 6 2.0404 1.4240 -2.5088 16 6 2.2787 2.1272 -3.6708 17 6 2.7401 1.4710 -4.7987 18 6 2.9913 2.2459 -6.0665 19 6 2.9141 3.7721 -5.9887 20 6 1.8053 2.9848 -6.6897 21 6 2.9714 0.1067 -4.7686 22 6 2.7439 -0.6094 -3.6124 23 1 -0.3633 0.6160 -0.8226 24 1 -0.3634 -1.0203 -0.1222 25 1 -0.3634 0.4044 0.9448 26 1 1.9132 -1.9113 3.4383 27 1 1.6757 1.9366 -1.6309 28 1 2.1008 3.1919 -3.7020 29 1 3.7269 1.8129 -6.7442 30 1 2.6820 4.2155 -5.0203 31 1 3.5991 4.3433 -6.6152 32 1 1.7608 3.0380 -7.7775 33 1 0.8431 2.9099 -6.1829 34 1 3.3318 -0.3981 -5.6526 35 1 2.9253 -1.6738 -3.5903 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087012556.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:53 Heat of formation + Delta-G solvation = -16.394984 kcal Electronic energy + Delta-G solvation = -16819.841586 eV Core-core repulsion = 14168.469505 eV Total energy + Delta-G solvation = -2651.372081 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.16619 -39.77313 -37.38237 -35.91209 -33.50518 -31.90754 -31.61527 -26.92766 -26.41175 -23.92504 -23.74091 -22.97478 -21.45840 -20.36967 -19.49489 -18.18209 -17.14868 -16.41174 -16.01399 -15.74126 -15.68099 -15.33387 -14.90461 -14.75428 -14.15651 -13.99794 -13.76508 -13.66532 -13.42177 -12.96720 -12.47682 -12.39159 -12.25002 -12.04794 -11.90532 -11.67841 -11.56118 -11.21017 -11.11415 -10.49964 -10.33113 -9.97501 -9.54865 -8.81353 -6.39987 -0.31133 0.40696 1.47650 1.51540 1.57313 1.76072 2.52600 2.70191 2.97872 3.17420 3.23067 3.59641 3.85127 3.96618 4.04646 4.16828 4.27560 4.34721 4.43833 4.49578 4.56295 4.68526 4.82614 4.82982 4.87723 4.99111 5.05786 5.16198 5.18628 5.31595 5.37024 5.44887 5.46779 5.57575 5.89386 5.93181 6.01631 6.51769 6.76959 7.36867 8.55070 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.032579 B = 0.005745 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.245603 B = 4872.530076 C = 5442.320591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.026 4.026 3 H 0.070 0.930 4 C -0.614 4.614 5 H 0.007 0.993 6 C -0.014 4.014 7 N -0.928 5.928 8 Si 1.079 2.921 9 H -0.288 1.288 10 H -0.256 1.256 11 H -0.230 1.230 12 C 0.402 3.598 13 O -0.509 6.509 14 C -0.191 4.191 15 C -0.068 4.068 16 C -0.133 4.133 17 C -0.021 4.021 18 C -0.137 4.137 19 C -0.169 4.169 20 C -0.162 4.162 21 C -0.128 4.128 22 C -0.078 4.078 23 H 0.074 0.926 24 H 0.027 0.973 25 H 0.059 0.941 26 H 0.250 0.750 27 H 0.144 0.856 28 H 0.158 0.842 29 H 0.126 0.874 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.150 0.850 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.487 14.105 -22.018 26.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.046 4.046 3 H 0.087 0.913 4 C -0.651 4.651 5 H 0.026 0.974 6 C -0.212 4.212 7 N -0.562 5.562 8 Si 0.896 3.104 9 H -0.214 1.214 10 H -0.180 1.180 11 H -0.153 1.153 12 C 0.284 3.716 13 O -0.388 6.388 14 C -0.192 4.192 15 C -0.086 4.086 16 C -0.150 4.150 17 C -0.022 4.022 18 C -0.155 4.155 19 C -0.206 4.206 20 C -0.198 4.198 21 C -0.145 4.145 22 C -0.097 4.097 23 H 0.093 0.907 24 H 0.046 0.954 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.162 0.838 28 H 0.175 0.825 29 H 0.144 0.856 30 H 0.121 0.879 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.111 0.889 34 H 0.168 0.832 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.647 14.637 -20.891 25.517 hybrid contribution 0.593 -2.566 -0.342 2.656 sum -0.054 12.071 -21.233 24.425 Atomic orbital electron populations 1.21930 0.94592 1.00363 1.01990 1.19460 0.95396 0.97808 0.91892 0.91254 1.21955 1.40725 1.09290 0.93116 0.97413 1.27492 0.92150 1.10349 0.91246 1.70976 1.46632 1.05586 1.33034 0.83702 0.79931 0.69697 0.77036 1.21432 1.18023 1.15340 1.23257 0.71049 0.87923 0.89418 1.90350 1.42653 1.19567 1.86234 1.20703 1.07140 0.96229 0.95168 1.21714 0.95509 0.91912 0.99515 1.21322 1.00656 1.01388 0.91653 1.19707 0.94691 0.93183 0.94569 1.21149 1.03721 0.94413 0.96197 1.23210 1.02225 0.91864 1.03296 1.23114 0.93339 1.02357 1.01037 1.21116 1.01713 0.93963 0.97749 1.21458 0.95578 1.00192 0.92437 0.90749 0.95403 0.92199 0.94162 0.83789 0.82481 0.85605 0.87895 0.86859 0.86844 0.88853 0.83182 0.86531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.57 8.90 71.98 0.64 -4.93 16 2 C -0.03 -1.25 1.66 -12.29 -0.02 -1.28 16 3 H 0.07 2.95 5.06 -2.39 -0.01 2.94 16 4 C -0.61 -37.22 8.57 25.60 0.22 -37.00 16 5 H 0.01 0.53 7.32 -2.91 -0.02 0.51 16 6 C -0.01 -0.83 5.20 84.66 0.44 -0.39 16 7 N -0.93 -60.00 13.70 21.45 0.29 -59.71 16 8 Si 1.08 47.67 26.44 68.60 1.81 49.48 16 9 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 10 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 11 H -0.23 -8.51 6.13 99.48 0.61 -7.90 16 12 C 0.40 18.97 6.16 28.03 0.17 19.14 16 13 O -0.51 -28.18 15.92 -2.96 -0.05 -28.23 16 14 C -0.19 -6.98 5.87 -20.15 -0.12 -7.10 16 15 C -0.07 -1.97 9.36 22.58 0.21 -1.76 16 16 C -0.13 -2.92 9.28 22.23 0.21 -2.71 16 17 C -0.02 -0.45 5.62 -19.78 -0.11 -0.56 16 18 C -0.14 -1.96 6.04 -11.54 -0.07 -2.03 16 19 C -0.17 -1.87 9.85 30.60 0.30 -1.57 16 20 C -0.16 -1.86 10.16 30.60 0.31 -1.54 16 21 C -0.13 -3.07 9.71 22.23 0.22 -2.86 16 22 C -0.08 -2.53 9.60 22.58 0.22 -2.32 16 23 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 24 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 2.54 5.45 -2.38 -0.01 2.53 16 26 H 0.25 16.73 8.73 -92.71 -0.81 15.92 16 27 H 0.14 3.81 6.37 -2.91 -0.02 3.79 16 28 H 0.16 2.45 6.00 -2.91 -0.02 2.43 16 29 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.10 1.11 6.16 -2.38 -0.01 1.09 16 31 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 34 H 0.15 2.72 8.06 -2.92 -0.02 2.70 16 35 H 0.12 3.98 7.65 -2.91 -0.02 3.96 16 Total: -1.00 -76.63 292.02 5.63 -71.00 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.96 Total: 14.35 kcal Atomic # 6 Polarization: -49.52 SS G_CDS: 2.62 Total: -46.90 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.29 Total: -59.71 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.05 Total: -28.23 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 1.81 Total: 49.48 kcal Total: -76.63 5.63 -71.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087012556.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.605 kcal (2) G-P(sol) polarization free energy of solvation -76.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds