Wall clock time and date at job start Mon Mar 30 2020 05:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47637 * 2 1 4 4 C 1.50699 * 109.47163 * 119.99959 * 2 1 3 5 5 H 1.08007 * 120.00060 * 120.00064 * 4 2 1 6 6 C 1.37876 * 120.00137 * 300.00067 * 4 2 1 7 7 N 1.31515 * 119.99578 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00346 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47142 * 89.99609 * 8 6 4 10 10 H 1.48497 * 109.47549 * 209.99960 * 8 6 4 11 11 H 1.48504 * 109.47135 * 330.00142 * 8 6 4 12 12 C 1.50704 * 109.47420 * 240.00065 * 2 1 3 13 13 O 1.21257 * 119.99847 * 270.00450 * 12 2 1 14 14 C 1.47162 * 120.00221 * 89.99765 * 12 2 1 15 15 C 1.39869 * 120.16997 * 354.02116 * 14 12 2 16 16 C 1.37868 * 119.82572 * 179.97438 * 15 14 12 17 17 C 1.38433 * 120.17056 * 359.97438 * 16 15 14 18 18 C 1.38382 * 120.34705 * 0.02562 * 17 16 15 19 19 C 1.37907 * 120.17371 * 0.25981 * 18 17 16 20 20 C 1.50698 * 120.08801 * 179.74791 * 19 18 17 21 21 C 1.53001 * 117.49865 * 1.99191 * 20 19 18 22 22 C 1.53000 * 60.00018 * 252.51625 * 21 20 19 23 23 H 1.08994 * 109.47235 * 299.99888 * 1 2 3 24 24 H 1.09000 * 109.47252 * 60.00633 * 1 2 3 25 25 H 1.08997 * 109.46972 * 179.97438 * 1 2 3 26 26 H 0.97002 * 119.99744 * 180.02562 * 7 6 4 27 27 H 1.07996 * 120.09210 * 0.02562 * 15 14 12 28 28 H 1.07998 * 119.91392 * 180.02562 * 16 15 14 29 29 H 1.07999 * 119.82474 * 179.97438 * 17 16 15 30 30 H 1.07999 * 119.91200 * 179.97438 * 18 17 16 31 31 H 1.09003 * 115.55230 * 147.70298 * 20 19 18 32 32 H 1.08999 * 117.49697 * 0.02562 * 21 20 19 33 33 H 1.08993 * 117.50032 * 145.02591 * 21 20 19 34 34 H 1.09004 * 117.49359 * 252.50921 * 22 21 20 35 35 H 1.08999 * 117.49830 * 107.49340 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6033 8 14 2.3213 -1.1203 4.0080 9 1 3.6296 -0.5459 4.4123 10 1 1.3431 -0.9492 5.1121 11 1 2.4858 -2.5662 3.7120 12 6 2.0324 -0.7104 -1.2305 13 8 2.2344 -1.9056 -1.2004 14 6 2.2776 0.0464 -2.4685 15 6 1.9288 1.3987 -2.5466 16 6 2.1623 2.1010 -3.7097 17 6 2.7408 1.4714 -4.7984 18 6 3.0887 0.1338 -4.7290 19 6 2.8562 -0.5839 -3.5746 20 6 3.2307 -2.0418 -3.5030 21 6 3.9086 -2.6580 -4.7285 22 6 2.4581 -3.0142 -4.3966 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.7095 1.1618 3.4843 27 1 1.4785 1.8916 -1.6977 28 1 1.8939 3.1453 -3.7714 29 1 2.9208 2.0268 -5.7070 30 1 3.5393 -0.3505 -5.5827 31 1 3.5427 -2.3995 -2.5218 32 1 4.0841 -2.0088 -5.5862 33 1 4.6668 -3.4212 -4.5536 34 1 2.2622 -4.0118 -4.0035 35 1 1.6790 -2.5994 -5.0363 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087014602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:57 Heat of formation + Delta-G solvation = 9.010330 kcal Electronic energy + Delta-G solvation = -17267.409759 eV Core-core repulsion = 14617.139335 eV Total energy + Delta-G solvation = -2650.270424 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.88669 -37.64580 -36.47768 -33.78524 -31.36330 -30.36830 -29.90495 -25.18824 -24.46108 -23.39686 -22.29186 -21.64223 -20.01364 -18.81557 -16.61323 -16.13886 -15.89898 -14.95681 -14.80809 -14.26493 -13.99000 -13.81544 -13.57288 -13.19390 -12.38329 -12.28695 -11.96902 -11.57312 -11.46035 -11.23738 -11.06982 -10.89488 -10.70314 -10.52850 -10.46796 -10.22553 -10.15324 -10.02819 -8.99296 -8.63285 -8.46218 -8.33835 -8.14676 -6.04445 -4.09153 1.15784 1.58940 3.21976 3.31453 3.37564 3.44256 3.96353 4.33624 4.42787 4.75813 4.95005 5.00527 5.12775 5.21958 5.27765 5.29401 5.42098 5.68190 5.71176 5.81715 5.98235 6.09345 6.22284 6.25824 6.38460 6.48033 6.64841 6.68607 6.71285 6.87619 7.00602 7.02789 7.17160 7.51804 7.76374 8.00146 8.25405 8.68676 8.95129 9.55426 11.02449 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.026843 B = 0.006891 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.842862 B = 4062.266721 C = 4754.260323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.006 3.994 3 H 0.050 0.950 4 C -0.505 4.505 5 H 0.066 0.934 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.398 3.602 13 O -0.456 6.456 14 C -0.151 4.151 15 C -0.066 4.066 16 C -0.143 4.143 17 C -0.100 4.100 18 C -0.143 4.143 19 C -0.005 4.005 20 C -0.115 4.115 21 C -0.189 4.189 22 C -0.161 4.161 23 H 0.094 0.906 24 H 0.013 0.987 25 H 0.032 0.968 26 H 0.261 0.739 27 H 0.139 0.861 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.140 0.860 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.490 0.701 -13.812 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.013 4.013 3 H 0.068 0.932 4 C -0.543 4.543 5 H 0.084 0.916 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.276 3.724 13 O -0.332 6.332 14 C -0.152 4.152 15 C -0.084 4.084 16 C -0.161 4.161 17 C -0.118 4.118 18 C -0.161 4.161 19 C -0.006 4.006 20 C -0.133 4.133 21 C -0.226 4.226 22 C -0.198 4.198 23 H 0.112 0.888 24 H 0.032 0.968 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.157 0.843 28 H 0.142 0.858 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.157 0.843 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.509 0.177 -13.649 13.879 hybrid contribution 0.275 -0.182 0.775 0.843 sum 2.784 -0.005 -12.874 13.171 Atomic orbital electron populations 1.21674 0.95983 1.00020 1.00970 1.19135 0.94381 0.97213 0.90532 0.93182 1.21064 1.31322 1.12483 0.89435 0.91617 1.24928 0.95002 0.95014 0.99038 1.69863 1.36832 1.22969 1.23565 0.86502 0.78513 0.80274 0.82258 1.20638 1.21167 1.19754 1.23348 0.72283 0.88460 0.88290 1.90279 1.39948 1.17479 1.85474 1.20949 1.02412 0.95393 0.96451 1.21669 0.95687 0.93038 0.97984 1.21114 1.01287 1.00074 0.93598 1.21232 0.97680 0.94573 0.98327 1.20965 1.02696 0.94561 0.97839 1.19466 0.94689 0.93886 0.92524 1.21468 1.04060 0.90360 0.97400 1.23084 0.95926 1.03845 0.99743 1.22861 0.94334 1.00020 1.02574 0.88767 0.96784 0.94884 0.92890 0.84284 0.85845 0.86235 0.85984 0.84251 0.88925 0.88731 0.88572 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.95 37.15 0.33 -2.73 16 2 C 0.01 0.15 1.95 -92.93 -0.18 -0.03 16 3 H 0.05 1.26 6.73 -51.93 -0.35 0.91 16 4 C -0.50 -14.19 8.32 -34.44 -0.29 -14.47 16 5 H 0.07 1.91 7.14 -52.48 -0.37 1.54 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.00 11.32 55.43 0.63 -24.38 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.40 9.09 6.13 -30.69 -0.19 8.90 16 13 O -0.46 -11.14 12.92 5.58 0.07 -11.07 16 14 C -0.15 -2.91 5.87 -105.07 -0.62 -3.52 16 15 C -0.07 -1.11 9.32 -39.11 -0.36 -1.48 16 16 C -0.14 -1.97 10.03 -39.64 -0.40 -2.37 16 17 C -0.10 -1.28 10.04 -39.46 -0.40 -1.68 16 18 C -0.14 -2.01 9.37 -39.65 -0.37 -2.38 16 19 C -0.01 -0.09 5.63 -104.15 -0.59 -0.68 16 20 C -0.12 -1.92 4.77 -91.77 -0.44 -2.35 16 21 C -0.19 -2.42 9.87 -26.73 -0.26 -2.68 16 22 C -0.16 -2.28 10.22 -26.73 -0.27 -2.55 16 23 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 24 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.14 2.36 6.53 -52.49 -0.34 2.01 16 28 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.12 1.43 5.93 -52.49 -0.31 1.11 16 31 H 0.14 2.70 5.87 -51.93 -0.30 2.39 16 32 H 0.09 1.03 6.09 -51.93 -0.32 0.72 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 290.36 15.07 4.38 4.38 Total: -1.00 -29.60 290.36 -8.48 -38.08 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -4.41 Total: 2.81 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -4.13 Total: -26.42 kcal Atomic # 7 Polarization: -25.00 SS G_CDS: 0.63 Total: -24.38 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.07 Total: -11.07 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.60 -8.48 -38.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087014602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.091 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds