Wall clock time and date at job start Mon Mar 30 2020 05:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47637 * 2 1 4 4 C 1.50699 * 109.47163 * 119.99959 * 2 1 3 5 5 H 1.08007 * 120.00060 * 120.00064 * 4 2 1 6 6 C 1.37876 * 120.00137 * 300.00067 * 4 2 1 7 7 N 1.31515 * 119.99578 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00346 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47142 * 89.99609 * 8 6 4 10 10 H 1.48497 * 109.47549 * 209.99960 * 8 6 4 11 11 H 1.48504 * 109.47135 * 330.00142 * 8 6 4 12 12 C 1.50704 * 109.47420 * 240.00065 * 2 1 3 13 13 O 1.21257 * 119.99847 * 270.00450 * 12 2 1 14 14 C 1.47162 * 120.00221 * 89.99765 * 12 2 1 15 15 C 1.39869 * 120.16997 * 354.02116 * 14 12 2 16 16 C 1.37868 * 119.82572 * 179.97438 * 15 14 12 17 17 C 1.38433 * 120.17056 * 359.97438 * 16 15 14 18 18 C 1.38382 * 120.34705 * 0.02562 * 17 16 15 19 19 C 1.37907 * 120.17371 * 0.25981 * 18 17 16 20 20 C 1.50698 * 120.08801 * 179.74791 * 19 18 17 21 21 C 1.53001 * 117.49865 * 1.99191 * 20 19 18 22 22 C 1.53000 * 60.00018 * 252.51625 * 21 20 19 23 23 H 1.08994 * 109.47235 * 299.99888 * 1 2 3 24 24 H 1.09000 * 109.47252 * 60.00633 * 1 2 3 25 25 H 1.08997 * 109.46972 * 179.97438 * 1 2 3 26 26 H 0.97002 * 119.99744 * 180.02562 * 7 6 4 27 27 H 1.07996 * 120.09210 * 0.02562 * 15 14 12 28 28 H 1.07998 * 119.91392 * 180.02562 * 16 15 14 29 29 H 1.07999 * 119.82474 * 179.97438 * 17 16 15 30 30 H 1.07999 * 119.91200 * 179.97438 * 18 17 16 31 31 H 1.09003 * 115.55230 * 147.70298 * 20 19 18 32 32 H 1.08999 * 117.49697 * 0.02562 * 21 20 19 33 33 H 1.08993 * 117.50032 * 145.02591 * 21 20 19 34 34 H 1.09004 * 117.49359 * 252.50921 * 22 21 20 35 35 H 1.08999 * 117.49830 * 107.49340 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6033 8 14 2.3213 -1.1203 4.0080 9 1 3.6296 -0.5459 4.4123 10 1 1.3431 -0.9492 5.1121 11 1 2.4858 -2.5662 3.7120 12 6 2.0324 -0.7104 -1.2305 13 8 2.2344 -1.9056 -1.2004 14 6 2.2776 0.0464 -2.4685 15 6 1.9288 1.3987 -2.5466 16 6 2.1623 2.1010 -3.7097 17 6 2.7408 1.4714 -4.7984 18 6 3.0887 0.1338 -4.7290 19 6 2.8562 -0.5839 -3.5746 20 6 3.2307 -2.0418 -3.5030 21 6 3.9086 -2.6580 -4.7285 22 6 2.4581 -3.0142 -4.3966 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.7095 1.1618 3.4843 27 1 1.4785 1.8916 -1.6977 28 1 1.8939 3.1453 -3.7714 29 1 2.9208 2.0268 -5.7070 30 1 3.5393 -0.3505 -5.5827 31 1 3.5427 -2.3995 -2.5218 32 1 4.0841 -2.0088 -5.5862 33 1 4.6668 -3.4212 -4.5536 34 1 2.2622 -4.0118 -4.0035 35 1 1.6790 -2.5994 -5.0363 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087014602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:57 Heat of formation + Delta-G solvation = -5.971627 kcal Electronic energy + Delta-G solvation = -17268.059425 eV Core-core repulsion = 14617.139335 eV Total energy + Delta-G solvation = -2650.920090 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.27042 -39.20801 -37.62084 -35.81486 -33.04914 -31.70744 -31.36372 -27.30764 -25.99409 -24.56735 -23.60971 -23.03637 -21.23560 -20.43995 -18.39740 -17.77684 -17.25675 -16.69993 -16.20213 -15.60810 -15.45917 -15.27139 -15.05988 -14.77762 -14.15842 -13.68648 -13.39929 -13.14046 -13.04826 -12.75698 -12.69867 -12.50703 -12.27035 -12.25034 -12.13762 -11.87077 -11.56862 -11.30872 -11.07670 -10.56832 -9.89971 -9.84199 -9.50645 -8.17918 -6.30372 -0.15869 0.43729 1.37139 1.38029 1.49390 1.70748 2.39056 2.75663 3.09685 3.14628 3.42713 3.64062 3.88965 4.03739 4.16918 4.22441 4.34615 4.45906 4.58293 4.68466 4.72263 4.75598 4.89866 4.97765 5.01462 5.04676 5.12725 5.19197 5.24967 5.45773 5.49184 5.53730 5.66910 5.71383 5.92306 6.04099 6.20560 6.73657 6.94439 7.36963 8.87494 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.026843 B = 0.006891 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.842862 B = 4062.266721 C = 4754.260323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.001 3.999 3 H 0.042 0.958 4 C -0.534 4.534 5 H 0.043 0.957 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.271 1.271 10 H -0.273 1.273 11 H -0.279 1.279 12 C 0.395 3.605 13 O -0.487 6.487 14 C -0.189 4.189 15 C -0.078 4.078 16 C -0.139 4.139 17 C -0.079 4.079 18 C -0.141 4.141 19 C -0.013 4.013 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.161 4.161 23 H 0.075 0.925 24 H 0.042 0.958 25 H 0.018 0.982 26 H 0.266 0.734 27 H 0.127 0.873 28 H 0.157 0.843 29 H 0.167 0.833 30 H 0.154 0.846 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.192 1.818 -16.508 16.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.018 4.018 3 H 0.059 0.941 4 C -0.572 4.572 5 H 0.061 0.939 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.197 1.197 10 H -0.198 1.198 11 H -0.204 1.204 12 C 0.276 3.724 13 O -0.366 6.366 14 C -0.190 4.190 15 C -0.096 4.096 16 C -0.157 4.157 17 C -0.097 4.097 18 C -0.158 4.158 19 C -0.013 4.013 20 C -0.170 4.170 21 C -0.191 4.191 22 C -0.198 4.198 23 H 0.093 0.907 24 H 0.061 0.939 25 H 0.038 0.962 26 H 0.075 0.925 27 H 0.145 0.855 28 H 0.174 0.826 29 H 0.184 0.816 30 H 0.172 0.828 31 H 0.117 0.883 32 H 0.138 0.862 33 H 0.124 0.876 34 H 0.110 0.890 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.206 1.313 -16.346 16.710 hybrid contribution 0.072 -0.485 1.547 1.623 sum 3.278 0.828 -14.800 15.181 Atomic orbital electron populations 1.21488 0.95430 0.99126 1.01344 1.19097 0.94955 0.96598 0.91104 0.94055 1.21253 1.31999 1.12430 0.91487 0.93883 1.25612 0.95068 0.95706 1.01456 1.69945 1.36963 1.23523 1.24398 0.85611 0.78568 0.78737 0.79109 1.19653 1.19827 1.20398 1.23330 0.71511 0.88220 0.89320 1.90267 1.41532 1.18556 1.86209 1.20647 1.06252 0.96363 0.95760 1.21693 0.96334 0.92326 0.99283 1.21485 1.00303 1.01432 0.92434 1.21783 0.94572 0.94069 0.99264 1.21323 1.02028 0.95142 0.97345 1.19621 0.94501 0.94198 0.93018 1.21304 1.07464 0.91060 0.97210 1.23209 0.94982 1.03040 0.97917 1.22933 0.95851 0.99183 1.01858 0.90678 0.93920 0.96243 0.92473 0.85506 0.82562 0.81594 0.82819 0.88288 0.86174 0.87642 0.88973 0.88173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 8.95 71.98 0.64 -5.12 16 2 C 0.00 0.07 1.95 -12.29 -0.02 0.05 16 3 H 0.04 2.21 6.73 -2.39 -0.02 2.20 16 4 C -0.53 -31.56 8.32 25.60 0.21 -31.35 16 5 H 0.04 2.67 7.14 -2.91 -0.02 2.65 16 6 C 0.02 1.20 5.30 84.65 0.45 1.65 16 7 N -0.91 -51.99 11.32 21.45 0.24 -51.75 16 8 Si 0.95 45.32 29.54 68.60 2.03 47.34 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 12 C 0.39 19.16 6.13 28.03 0.17 19.34 16 13 O -0.49 -25.62 12.92 -2.96 -0.04 -25.66 16 14 C -0.19 -7.44 5.87 -20.15 -0.12 -7.56 16 15 C -0.08 -2.61 9.32 22.58 0.21 -2.40 16 16 C -0.14 -3.36 10.03 22.23 0.22 -3.14 16 17 C -0.08 -1.63 10.04 22.35 0.22 -1.40 16 18 C -0.14 -3.42 9.37 22.23 0.21 -3.21 16 19 C -0.01 -0.44 5.63 -19.56 -0.11 -0.55 16 20 C -0.15 -5.10 4.77 -11.54 -0.06 -5.15 16 21 C -0.16 -3.57 9.87 30.59 0.30 -3.27 16 22 C -0.16 -4.41 10.22 30.59 0.31 -4.10 16 23 H 0.07 4.00 6.07 -2.39 -0.01 3.98 16 24 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 27 H 0.13 4.41 6.53 -2.91 -0.02 4.39 16 28 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 29 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 30 H 0.15 2.71 5.93 -2.91 -0.02 2.70 16 31 H 0.10 4.12 5.87 -2.39 -0.01 4.11 16 32 H 0.12 2.10 6.09 -2.39 -0.01 2.08 16 33 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 35 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -68.12 290.36 5.97 -62.14 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 1.09 Total: 14.14 kcal Atomic # 6 Polarization: -48.86 SS G_CDS: 2.65 Total: -46.21 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.24 Total: -51.75 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.04 Total: -25.66 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -68.12 5.97 -62.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087014602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.173 kcal (2) G-P(sol) polarization free energy of solvation -68.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds