Wall clock time and date at job start Mon Mar 30 2020 06:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39656 * 120.15385 * 298.65904 * 3 2 1 5 5 C 1.37925 * 119.84897 * 179.97438 * 4 3 2 6 6 C 1.38377 * 120.15190 * 0.02562 * 5 4 3 7 7 C 1.38345 * 120.30774 * 359.97438 * 6 5 4 8 8 C 1.37972 * 120.14716 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.07405 * 179.97438 * 8 7 6 10 10 N 1.46907 * 109.46881 * 259.99647 * 9 8 7 11 11 C 1.46903 * 110.99868 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46914 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47031 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47516 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99435 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00364 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99752 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99808 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47223 * 59.99956 * 18 16 14 20 20 H 1.48500 * 109.46795 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47101 * 299.99631 * 18 16 14 22 22 H 1.08007 * 120.07559 * 0.26139 * 4 3 2 23 23 H 1.07999 * 119.92167 * 179.97438 * 5 4 3 24 24 H 1.07995 * 119.85238 * 179.97438 * 6 5 4 25 25 H 1.07992 * 119.92787 * 180.02562 * 7 6 5 26 26 H 1.09001 * 109.47409 * 19.99633 * 9 8 7 27 27 H 1.08999 * 109.47336 * 139.99904 * 9 8 7 28 28 H 1.00896 * 111.00160 * 303.95633 * 10 9 8 29 29 H 1.08997 * 109.47253 * 300.00492 * 11 10 9 30 30 H 1.09000 * 109.47043 * 60.00581 * 11 10 9 31 31 H 1.08994 * 109.47158 * 300.00143 * 12 11 10 32 32 H 1.09000 * 109.46733 * 60.00462 * 12 11 10 33 33 H 1.09005 * 109.47620 * 300.00560 * 13 12 11 34 34 H 1.09006 * 109.46780 * 60.00237 * 13 12 11 35 35 H 0.97005 * 119.99762 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2697 -0.5782 1.0596 5 6 4.6489 -0.5745 1.0529 6 6 5.3374 0.0014 -0.0002 7 6 4.6486 0.5766 -1.0532 8 6 3.2689 0.5790 -1.0598 9 6 2.5203 1.2065 -2.2074 10 7 2.0672 2.5494 -1.8205 11 6 1.3324 3.1933 -2.9174 12 6 0.8771 4.5863 -2.4776 13 6 0.1123 5.2573 -3.6202 14 6 -0.3356 6.6295 -3.1874 15 1 -0.0981 6.9874 -2.1965 16 6 -1.0486 7.4281 -4.0563 17 7 -1.3382 6.9920 -5.2627 18 14 -1.6031 9.1293 -3.5198 19 1 -0.4156 9.9498 -3.1708 20 1 -2.3466 9.7800 -4.6284 21 1 -2.4885 9.0102 -2.3336 22 1 2.7336 -1.0318 1.8802 23 1 5.1928 -1.0215 1.8720 24 1 6.4173 0.0019 -0.0003 25 1 5.1921 1.0240 -1.8722 26 1 3.1782 1.2805 -3.0733 27 1 1.6571 0.5902 -2.4585 28 1 1.5079 2.5145 -0.9815 29 1 1.9823 3.2811 -3.7880 30 1 0.4609 2.5909 -3.1739 31 1 0.2270 4.4981 -1.6072 32 1 1.7483 5.1890 -2.2209 33 1 0.7628 5.3455 -4.4905 34 1 -0.7589 4.6547 -3.8774 35 1 -1.8401 7.5537 -5.8739 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126227213.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:34 Heat of formation + Delta-G solvation = 36.021613 kcal Electronic energy + Delta-G solvation = -15981.341444 eV Core-core repulsion = 13364.535068 eV Total energy + Delta-G solvation = -2616.806376 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.95889 -36.64207 -36.35552 -33.76678 -32.20855 -31.57411 -30.42123 -26.89659 -24.90616 -23.84749 -22.27044 -21.75476 -20.11937 -18.88774 -16.54991 -16.15461 -16.06169 -15.24933 -14.87592 -14.67830 -14.38238 -13.98559 -13.83756 -13.43490 -13.16071 -12.96304 -12.55312 -12.46434 -12.10409 -11.87690 -11.52772 -11.36507 -11.21753 -10.80084 -10.56804 -10.51956 -9.68466 -9.40904 -9.24654 -9.14145 -9.01173 -8.31610 -8.26503 -5.96670 -3.98747 0.50422 1.00834 2.51670 2.76207 3.36292 3.40002 3.43040 3.57678 3.67818 4.32030 4.48900 4.50449 4.63162 4.68784 4.97296 5.08870 5.30893 5.36130 5.39060 5.56262 5.66576 5.77417 5.87640 5.94435 6.08405 6.19091 6.30872 6.50124 6.70326 6.73395 7.13995 7.24015 7.31929 7.49436 7.70830 7.85769 8.03520 8.46809 9.08069 9.65021 11.14831 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.037813 B = 0.003615 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.313625 B = 7744.539224 C = 7960.370163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C 0.246 3.754 3 C -0.027 4.027 4 C -0.071 4.071 5 C -0.125 4.125 6 C -0.090 4.090 7 C -0.102 4.102 8 C -0.026 4.026 9 C 0.085 3.915 10 N -0.682 5.682 11 C 0.058 3.942 12 C -0.107 4.107 13 C 0.023 3.977 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.131 0.869 23 H 0.131 0.869 24 H 0.130 0.870 25 H 0.136 0.864 26 H 0.090 0.910 27 H 0.038 0.962 28 H 0.336 0.664 29 H 0.071 0.929 30 H 0.025 0.975 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.017 0.983 34 H 0.013 0.987 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.752 -17.102 10.472 24.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.083 5.083 2 C -0.069 4.069 3 C -0.031 4.031 4 C -0.092 4.092 5 C -0.143 4.143 6 C -0.109 4.109 7 C -0.121 4.121 8 C -0.029 4.029 9 C -0.044 4.044 10 N -0.313 5.313 11 C -0.070 4.070 12 C -0.145 4.145 13 C -0.015 4.015 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.149 0.851 23 H 0.149 0.851 24 H 0.148 0.852 25 H 0.153 0.847 26 H 0.108 0.892 27 H 0.056 0.944 28 H 0.154 0.846 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.032 0.968 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.474 -16.741 10.120 23.753 hybrid contribution -0.796 0.460 0.256 0.954 sum 12.678 -16.281 10.377 23.097 Atomic orbital electron populations 1.81312 1.11922 1.07941 1.07083 1.25743 0.92783 0.94208 0.94197 1.15958 0.84311 1.05115 0.97709 1.21142 0.94481 0.97075 0.96487 1.21079 0.93539 1.00582 0.99138 1.21419 1.00487 0.95685 0.93296 1.21044 0.92710 0.98978 0.99321 1.19960 0.94114 0.94637 0.94193 1.21035 0.98164 0.90027 0.95201 1.60675 1.45877 1.17213 1.07542 1.22182 0.95331 0.96348 0.93134 1.21628 0.99768 0.92808 1.00295 1.19059 0.94777 0.94887 0.92770 1.21220 1.34500 1.00384 0.99672 0.92710 1.25029 0.96126 0.98394 0.94969 1.69958 1.40060 1.37255 1.06375 0.86645 0.78815 0.84383 0.78092 1.20186 1.21307 1.20272 0.85093 0.85063 0.85195 0.84657 0.89169 0.94362 0.84623 0.91047 0.95657 0.93721 0.92385 0.96501 0.96822 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.21 18.54 41.83 0.78 -5.44 16 2 C 0.25 3.12 13.31 -22.48 -0.30 2.82 16 3 C -0.03 -0.27 5.73 -106.93 -0.61 -0.89 16 4 C -0.07 -0.54 9.76 -39.17 -0.38 -0.92 16 5 C -0.13 -0.77 10.03 -39.64 -0.40 -1.16 16 6 C -0.09 -0.57 10.04 -39.49 -0.40 -0.97 16 7 C -0.10 -0.83 9.66 -39.64 -0.38 -1.21 16 8 C -0.03 -0.26 5.43 -104.21 -0.57 -0.83 16 9 C 0.08 1.02 5.28 -4.97 -0.03 1.00 16 10 N -0.68 -10.28 6.49 -115.05 -0.75 -11.03 16 11 C 0.06 1.04 5.69 -3.82 -0.02 1.02 16 12 C -0.11 -2.31 5.41 -26.73 -0.14 -2.45 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 15 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -27.59 13.29 55.43 0.74 -26.86 16 18 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 23 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 24 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 25 H 0.14 0.93 8.03 -52.49 -0.42 0.50 16 26 H 0.09 0.98 8.00 -51.93 -0.42 0.56 16 27 H 0.04 0.49 7.48 -51.93 -0.39 0.10 16 28 H 0.34 5.20 8.01 -39.29 -0.31 4.89 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 309.65 15.07 4.67 4.67 Total: -1.00 -32.50 309.65 -8.26 -40.75 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -4.89 Total: -2.17 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -3.78 Total: -17.09 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.77 Total: -43.32 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.50 -8.26 -40.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126227213.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.776 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds