Wall clock time and date at job start Mon Mar 30 2020 06:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39656 * 120.15385 * 298.65904 * 3 2 1 5 5 C 1.37925 * 119.84897 * 179.97438 * 4 3 2 6 6 C 1.38377 * 120.15190 * 0.02562 * 5 4 3 7 7 C 1.38345 * 120.30774 * 359.97438 * 6 5 4 8 8 C 1.37972 * 120.14716 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.07405 * 179.97438 * 8 7 6 10 10 N 1.46907 * 109.46881 * 259.99647 * 9 8 7 11 11 C 1.46903 * 110.99868 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46914 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47031 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47516 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99435 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00364 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99752 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99808 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47223 * 59.99956 * 18 16 14 20 20 H 1.48500 * 109.46795 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47101 * 299.99631 * 18 16 14 22 22 H 1.08007 * 120.07559 * 0.26139 * 4 3 2 23 23 H 1.07999 * 119.92167 * 179.97438 * 5 4 3 24 24 H 1.07995 * 119.85238 * 179.97438 * 6 5 4 25 25 H 1.07992 * 119.92787 * 180.02562 * 7 6 5 26 26 H 1.09001 * 109.47409 * 19.99633 * 9 8 7 27 27 H 1.08999 * 109.47336 * 139.99904 * 9 8 7 28 28 H 1.00896 * 111.00160 * 303.95633 * 10 9 8 29 29 H 1.08997 * 109.47253 * 300.00492 * 11 10 9 30 30 H 1.09000 * 109.47043 * 60.00581 * 11 10 9 31 31 H 1.08994 * 109.47158 * 300.00143 * 12 11 10 32 32 H 1.09000 * 109.46733 * 60.00462 * 12 11 10 33 33 H 1.09005 * 109.47620 * 300.00560 * 13 12 11 34 34 H 1.09006 * 109.46780 * 60.00237 * 13 12 11 35 35 H 0.97005 * 119.99762 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2697 -0.5782 1.0596 5 6 4.6489 -0.5745 1.0529 6 6 5.3374 0.0014 -0.0002 7 6 4.6486 0.5766 -1.0532 8 6 3.2689 0.5790 -1.0598 9 6 2.5203 1.2065 -2.2074 10 7 2.0672 2.5494 -1.8205 11 6 1.3324 3.1933 -2.9174 12 6 0.8771 4.5863 -2.4776 13 6 0.1123 5.2573 -3.6202 14 6 -0.3356 6.6295 -3.1874 15 1 -0.0981 6.9874 -2.1965 16 6 -1.0486 7.4281 -4.0563 17 7 -1.3382 6.9920 -5.2627 18 14 -1.6031 9.1293 -3.5198 19 1 -0.4156 9.9498 -3.1708 20 1 -2.3466 9.7800 -4.6284 21 1 -2.4885 9.0102 -2.3336 22 1 2.7336 -1.0318 1.8802 23 1 5.1928 -1.0215 1.8720 24 1 6.4173 0.0019 -0.0003 25 1 5.1921 1.0240 -1.8722 26 1 3.1782 1.2805 -3.0733 27 1 1.6571 0.5902 -2.4585 28 1 1.5079 2.5145 -0.9815 29 1 1.9823 3.2811 -3.7880 30 1 0.4609 2.5909 -3.1739 31 1 0.2270 4.4981 -1.6072 32 1 1.7483 5.1890 -2.2209 33 1 0.7628 5.3455 -4.4905 34 1 -0.7589 4.6547 -3.8774 35 1 -1.8401 7.5537 -5.8739 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126227213.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:33 Heat of formation + Delta-G solvation = 15.825627 kcal Electronic energy + Delta-G solvation = -15982.217208 eV Core-core repulsion = 13364.535068 eV Total energy + Delta-G solvation = -2617.682139 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.65336 -37.77943 -37.52466 -35.60832 -33.75352 -32.22347 -31.79744 -28.49563 -26.26066 -24.65955 -23.87462 -22.60565 -21.87360 -19.61297 -18.52510 -17.35823 -16.77270 -16.59927 -16.29273 -15.84708 -15.59399 -15.14707 -14.94781 -14.50953 -14.30661 -14.12785 -13.94229 -13.61782 -13.37286 -13.15371 -13.12012 -12.69927 -12.51371 -12.38278 -12.19487 -11.92589 -11.59658 -11.43821 -11.16380 -10.57619 -9.86501 -9.86280 -9.48038 -8.22499 -6.34069 -0.18099 0.42049 1.38133 1.41932 1.49877 1.55243 1.94795 2.39266 2.80867 2.85773 3.10359 3.32188 3.70910 3.84151 4.13654 4.16798 4.27537 4.39664 4.48713 4.59279 4.64255 4.66775 4.84933 4.90831 5.01912 5.07902 5.17851 5.39276 5.47356 5.50824 5.57857 5.69402 5.81667 5.87447 5.97815 6.20176 6.23330 6.38586 6.82112 7.35162 8.89407 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.037813 B = 0.003615 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.313625 B = 7744.539224 C = 7960.370163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.268 3.732 3 C -0.051 4.051 4 C -0.069 4.069 5 C -0.116 4.116 6 C -0.079 4.079 7 C -0.107 4.107 8 C -0.041 4.041 9 C 0.085 3.915 10 N -0.679 5.679 11 C 0.071 3.929 12 C -0.093 4.093 13 C 0.026 3.974 14 C -0.547 4.547 15 H 0.059 0.941 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.968 3.032 19 H -0.264 1.264 20 H -0.281 1.281 21 H -0.269 1.269 22 H 0.147 0.853 23 H 0.165 0.835 24 H 0.162 0.838 25 H 0.147 0.853 26 H 0.103 0.897 27 H 0.025 0.975 28 H 0.333 0.667 29 H 0.077 0.923 30 H 0.013 0.987 31 H 0.040 0.960 32 H 0.060 0.940 33 H -0.003 1.003 34 H -0.014 1.014 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.177 -17.224 12.117 27.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.046 4.046 3 C -0.055 4.055 4 C -0.089 4.089 5 C -0.134 4.134 6 C -0.098 4.098 7 C -0.125 4.125 8 C -0.044 4.044 9 C -0.043 4.043 10 N -0.309 5.309 11 C -0.058 4.058 12 C -0.131 4.131 13 C -0.012 4.012 14 C -0.584 4.584 15 H 0.077 0.923 16 C -0.199 4.199 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.188 1.188 20 H -0.206 1.206 21 H -0.194 1.194 22 H 0.164 0.836 23 H 0.183 0.817 24 H 0.180 0.820 25 H 0.165 0.835 26 H 0.122 0.878 27 H 0.043 0.957 28 H 0.150 0.850 29 H 0.095 0.905 30 H 0.032 0.968 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.016 0.984 34 H 0.004 0.996 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.915 -16.881 11.776 26.018 hybrid contribution -1.424 0.420 -0.239 1.504 sum 14.491 -16.461 11.537 24.780 Atomic orbital electron populations 1.81313 1.13644 1.10321 1.09120 1.26261 0.93326 0.92502 0.92500 1.16133 0.82832 1.07267 0.99230 1.21413 0.95422 0.96223 0.95888 1.21505 0.92808 0.99299 0.99766 1.21828 1.02104 0.93712 0.92125 1.21256 0.91711 0.99103 1.00454 1.19808 0.94983 0.95928 0.93699 1.21079 0.98140 0.88161 0.96929 1.60634 1.44672 1.19258 1.06304 1.21893 0.95357 0.94361 0.94194 1.21376 0.98997 0.94633 0.98049 1.18958 0.93886 0.94425 0.93881 1.21666 1.35053 1.01637 1.00089 0.92275 1.26019 0.95979 1.03048 0.94887 1.70093 1.40640 1.39058 1.07609 0.85466 0.78730 0.78748 0.77913 1.18845 1.20616 1.19376 0.83560 0.81733 0.82031 0.83490 0.87836 0.95696 0.85012 0.90457 0.96843 0.94100 0.92132 0.98443 0.99562 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -14.94 18.54 19.00 0.35 -14.59 16 2 C 0.27 6.95 13.31 88.33 1.18 8.13 16 3 C -0.05 -0.98 5.73 -21.36 -0.12 -1.10 16 4 C -0.07 -0.87 9.76 22.54 0.22 -0.65 16 5 C -0.12 -0.92 10.03 22.23 0.22 -0.70 16 6 C -0.08 -0.67 10.04 22.33 0.22 -0.44 16 7 C -0.11 -1.43 9.66 22.23 0.21 -1.22 16 8 C -0.04 -0.79 5.43 -19.60 -0.11 -0.89 16 9 C 0.09 2.04 5.28 85.55 0.45 2.49 16 10 N -0.68 -20.45 6.49 -517.91 -3.36 -23.81 16 11 C 0.07 2.58 5.69 86.30 0.49 3.07 16 12 C -0.09 -4.08 5.41 30.59 0.17 -3.91 16 13 C 0.03 1.45 4.97 29.85 0.15 1.60 16 14 C -0.55 -32.50 9.11 25.60 0.23 -32.26 16 15 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 16 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 17 N -0.93 -58.49 13.29 21.45 0.28 -58.21 16 18 Si 0.97 45.54 29.54 68.60 2.03 47.57 16 19 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 22 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 23 H 0.17 0.27 8.06 -2.91 -0.02 0.25 16 24 H 0.16 0.39 8.06 -2.91 -0.02 0.36 16 25 H 0.15 1.58 8.03 -2.91 -0.02 1.56 16 26 H 0.10 2.16 8.00 -2.39 -0.02 2.14 16 27 H 0.02 0.66 7.48 -2.39 -0.02 0.64 16 28 H 0.33 10.45 8.01 -89.70 -0.72 9.73 16 29 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.01 0.51 8.14 -2.39 -0.02 0.50 16 31 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 34 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 35 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 Total: -1.00 -72.13 309.65 3.44 -68.69 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 0.36 Total: 5.88 kcal Atomic # 6 Polarization: -29.30 SS G_CDS: 3.78 Total: -25.52 kcal Atomic # 7 Polarization: -93.88 SS G_CDS: -2.72 Total: -96.61 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -72.13 3.44 -68.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126227213.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.511 kcal (2) G-P(sol) polarization free energy of solvation -72.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds