Wall clock time and date at job start Mon Mar 30 2020 06:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39720 * 120.20635 * 80.55612 * 3 2 1 5 5 C 1.37796 * 119.91802 * 180.02562 * 4 3 2 6 6 C 1.38572 * 120.34678 * 359.97438 * 5 4 3 7 7 C 1.38015 * 120.42133 * 0.02562 * 6 5 4 8 8 C 1.38888 * 120.06689 * 359.71253 * 7 6 5 9 9 N 1.39032 * 120.16830 * 180.28227 * 8 7 6 10 10 C 1.46501 * 120.00281 * 0.28304 * 9 8 7 11 11 C 1.52994 * 109.47106 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47091 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47337 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47465 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99731 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00157 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99972 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00024 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46986 * 90.00450 * 18 16 14 20 20 H 1.48500 * 109.47224 * 210.00270 * 18 16 14 21 21 H 1.48500 * 109.47382 * 330.00417 * 18 16 14 22 22 H 1.08001 * 120.04427 * 359.97438 * 4 3 2 23 23 H 1.08008 * 119.82908 * 179.97438 * 5 4 3 24 24 H 1.07996 * 119.78644 * 179.97438 * 6 5 4 25 25 H 1.08000 * 119.96312 * 180.02562 * 7 6 5 26 26 H 0.97004 * 120.00087 * 180.27617 * 9 8 7 27 27 H 1.08998 * 109.46715 * 299.99546 * 10 9 8 28 28 H 1.08996 * 109.46917 * 59.99467 * 10 9 8 29 29 H 1.09004 * 109.47463 * 299.99908 * 11 10 9 30 30 H 1.09002 * 109.47684 * 59.99711 * 11 10 9 31 31 H 1.08999 * 109.47395 * 299.99720 * 12 11 10 32 32 H 1.08997 * 109.47201 * 60.00127 * 12 11 10 33 33 H 1.09004 * 109.47341 * 300.00226 * 13 12 11 34 34 H 1.09003 * 109.47127 * 59.99563 * 13 12 11 35 35 H 0.96994 * 120.00125 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2710 -0.1972 -1.1911 5 6 4.6490 -0.1959 -1.1842 6 6 5.3430 0.0012 -0.0011 7 6 4.6628 0.1979 1.1836 8 6 3.2740 0.2054 1.1957 9 7 2.5868 0.4093 2.3870 10 6 3.3275 0.6231 3.6327 11 6 2.3409 0.8208 4.7852 12 6 3.1145 1.0434 6.0863 13 6 2.1279 1.2418 7.2387 14 6 2.8898 1.4618 8.5202 15 1 3.9698 1.4598 8.5134 16 6 2.2082 1.6644 9.7014 17 7 2.8732 1.8569 10.8196 18 14 0.3403 1.6672 9.7133 19 1 -0.1552 0.2879 9.9530 20 1 -0.1466 2.5627 10.7932 21 1 -0.1624 2.1529 8.4031 22 1 2.7352 -0.3517 -2.1160 23 1 5.1910 -0.3494 -2.1057 24 1 6.4229 0.0000 -0.0060 25 1 5.2112 0.3512 2.1013 26 1 1.6167 0.4101 2.3933 27 1 3.9548 -0.2449 3.8359 28 1 3.9542 1.5095 3.5352 29 1 1.7138 1.6889 4.5818 30 1 1.7138 -0.0654 4.8829 31 1 3.7412 0.1751 6.2895 32 1 3.7417 1.9295 5.9890 33 1 1.5014 2.1104 7.0353 34 1 1.5001 0.3560 7.3362 35 1 2.3937 1.9998 11.6506 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000149215682.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:35 Heat of formation + Delta-G solvation = 14.283237 kcal Electronic energy + Delta-G solvation = -15873.500442 eV Core-core repulsion = 13255.751420 eV Total energy + Delta-G solvation = -2617.749022 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.65803 -37.72883 -37.38673 -35.87834 -34.22887 -32.22938 -31.43403 -29.32657 -26.45467 -24.83014 -23.53948 -22.13527 -21.83468 -19.78544 -18.87114 -17.86750 -17.11791 -16.67856 -16.31861 -15.62699 -15.31045 -15.13465 -14.95072 -14.70960 -14.65095 -14.06188 -13.85465 -13.76421 -13.51319 -13.33390 -12.95604 -12.49639 -12.42238 -12.34905 -11.93268 -11.78489 -11.47677 -11.41441 -11.28397 -11.01277 -10.77704 -9.84653 -8.44804 -8.30966 -6.34545 0.00810 0.69911 1.33690 1.35396 1.46991 1.62426 2.03699 2.33121 2.34118 3.01673 3.04633 3.06040 3.86077 4.00550 4.08369 4.23691 4.33399 4.52584 4.60463 4.62974 4.63623 4.77918 4.78585 5.04721 5.10122 5.12230 5.17367 5.27689 5.51289 5.54881 5.61917 5.66709 5.70809 5.91099 6.21776 6.27967 6.50024 6.57409 6.74294 7.30358 8.85848 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.036632 B = 0.003672 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.177667 B = 7622.550224 C = 8355.672613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C 0.278 3.722 3 C -0.143 4.143 4 C -0.023 4.023 5 C -0.181 4.181 6 C -0.032 4.032 7 C -0.211 4.211 8 C 0.256 3.744 9 N -0.741 5.741 10 C 0.128 3.872 11 C -0.124 4.124 12 C -0.091 4.091 13 C -0.016 4.016 14 C -0.532 4.532 15 H 0.035 0.965 16 C 0.002 3.998 17 N -0.952 5.952 18 Si 0.949 3.051 19 H -0.268 1.268 20 H -0.284 1.284 21 H -0.249 1.249 22 H 0.145 0.855 23 H 0.156 0.844 24 H 0.156 0.844 25 H 0.139 0.861 26 H 0.396 0.604 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.016 0.984 34 H 0.015 0.985 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.749 -4.418 -25.840 26.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.160 5.160 2 C -0.034 4.034 3 C -0.152 4.152 4 C -0.043 4.043 5 C -0.201 4.201 6 C -0.052 4.052 7 C -0.233 4.233 8 C 0.146 3.854 9 N -0.366 5.366 10 C 0.004 3.996 11 C -0.162 4.162 12 C -0.129 4.129 13 C -0.053 4.053 14 C -0.571 4.571 15 H 0.054 0.946 16 C -0.194 4.194 17 N -0.593 5.593 18 Si 0.773 3.227 19 H -0.193 1.193 20 H -0.210 1.210 21 H -0.173 1.173 22 H 0.162 0.838 23 H 0.173 0.827 24 H 0.173 0.827 25 H 0.157 0.843 26 H 0.230 0.770 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.034 0.966 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.091 -4.348 -25.453 26.006 hybrid contribution -0.813 0.139 0.914 1.231 sum 2.278 -4.209 -24.539 25.001 Atomic orbital electron populations 1.81276 1.13381 1.12793 1.08554 1.26012 0.92960 0.91800 0.92648 1.15710 0.82989 1.21194 0.95314 1.21173 0.94978 0.92886 0.95306 1.21180 0.92974 1.06196 0.99716 1.21530 1.01526 0.91022 0.91074 1.20899 0.90673 1.10799 1.00956 1.17977 0.92376 0.90637 0.84377 1.44940 1.08595 1.77439 1.05629 1.21466 0.94531 1.01930 0.81625 1.21723 0.98425 1.02137 0.93891 1.21221 0.97847 1.01193 0.92679 1.19568 0.95915 0.96193 0.93622 1.21563 0.93982 1.48367 0.93141 0.94637 1.26023 1.03995 0.94312 0.95088 1.70064 1.38065 1.51279 0.99858 0.85668 0.79583 0.78727 0.78711 1.19264 1.20999 1.17255 0.83752 0.82658 0.82670 0.84314 0.77014 0.90664 0.90698 0.91785 0.91714 0.92500 0.92532 0.96523 0.96625 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -13.74 18.54 19.00 0.35 -13.39 16 2 C 0.28 6.56 14.09 88.33 1.25 7.81 16 3 C -0.14 -2.66 5.76 -21.16 -0.12 -2.78 16 4 C -0.02 -0.29 9.75 22.52 0.22 -0.07 16 5 C -0.18 -1.73 10.02 22.24 0.22 -1.51 16 6 C -0.03 -0.33 10.03 22.30 0.22 -0.11 16 7 C -0.21 -3.16 9.29 22.37 0.21 -2.95 16 8 C 0.26 4.85 6.66 38.67 0.26 5.11 16 9 N -0.74 -15.57 5.64 -338.74 -1.91 -17.48 16 10 C 0.13 2.71 4.91 86.38 0.42 3.13 16 11 C -0.12 -3.35 5.33 30.59 0.16 -3.19 16 12 C -0.09 -3.24 5.15 30.59 0.16 -3.09 16 13 C -0.02 -0.71 4.04 29.85 0.12 -0.59 16 14 C -0.53 -30.60 9.66 25.60 0.25 -30.36 16 15 H 0.04 2.22 7.99 -2.91 -0.02 2.20 16 16 C 0.00 0.14 5.47 84.65 0.46 0.61 16 17 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16 18 Si 0.95 44.69 27.47 68.60 1.88 46.57 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 21 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 22 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 23 H 0.16 0.63 8.06 -2.91 -0.02 0.60 16 24 H 0.16 0.76 8.06 -2.91 -0.02 0.73 16 25 H 0.14 1.89 6.72 -2.91 -0.02 1.87 16 26 H 0.40 8.90 7.33 -92.71 -0.68 8.22 16 27 H 0.08 1.49 7.93 -2.39 -0.02 1.47 16 28 H 0.07 1.48 7.95 -2.39 -0.02 1.46 16 29 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.02 0.75 7.20 -2.38 -0.02 0.73 16 34 H 0.02 0.69 7.57 -2.39 -0.02 0.68 16 35 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -69.34 304.27 4.81 -64.53 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.35 Total: 7.44 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 3.83 Total: -27.99 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -1.26 Total: -90.55 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -69.34 4.81 -64.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149215682.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.814 kcal (2) G-P(sol) polarization free energy of solvation -69.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds