Wall clock time and date at job start Mon Mar 30 2020 06:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39806 * 120.07821 * 304.75183 * 3 2 1 5 5 C 1.37648 * 119.92986 * 180.02562 * 4 3 2 6 6 C 1.39183 * 120.06861 * 359.97438 * 5 4 3 7 7 N 1.39187 * 119.91862 * 180.02562 * 6 5 4 8 8 C 1.46506 * 119.99974 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47289 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47131 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.47238 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99515 * 359.97438 * 12 11 10 14 14 C 1.37870 * 120.00176 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00145 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00043 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47216 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47057 * 120.00171 * 16 14 12 19 19 H 1.48500 * 109.47389 * 240.00151 * 16 14 12 20 20 C 1.39171 * 120.15377 * 0.27360 * 6 5 4 21 21 C 1.37649 * 120.07392 * 359.45351 * 20 6 5 22 22 H 1.08009 * 120.03339 * 0.02562 * 4 3 2 23 23 H 1.08001 * 119.96739 * 179.97438 * 5 4 3 24 24 H 0.97001 * 120.00775 * 359.97438 * 7 6 5 25 25 H 1.09001 * 109.47060 * 300.00400 * 8 7 6 26 26 H 1.09004 * 109.47073 * 59.99888 * 8 7 6 27 27 H 1.09001 * 109.46832 * 299.99854 * 9 8 7 28 28 H 1.08996 * 109.46952 * 59.99873 * 9 8 7 29 29 H 1.09001 * 109.46997 * 299.99574 * 10 9 8 30 30 H 1.09004 * 109.47298 * 59.99717 * 10 9 8 31 31 H 1.08998 * 109.47076 * 299.99221 * 11 10 9 32 32 H 1.09001 * 109.47502 * 60.00153 * 11 10 9 33 33 H 0.96999 * 120.00284 * 179.97438 * 15 14 12 34 34 H 1.08000 * 119.96345 * 179.70085 * 20 6 5 35 35 H 1.08007 * 120.03910 * 180.27716 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 -0.6887 0.9940 5 6 4.6455 -0.6856 0.9914 6 6 5.3394 0.0024 0.0002 7 7 6.7313 0.0030 0.0003 8 6 7.4635 0.7270 -1.0419 9 6 8.9678 0.5677 -0.8126 10 6 9.7324 1.3243 -1.9005 11 6 11.2367 1.1655 -1.6709 12 6 11.9899 1.9103 -2.7429 13 1 11.4496 2.4432 -3.5114 14 6 13.3686 1.9114 -2.7426 15 7 14.0265 1.2620 -1.8072 16 14 14.3022 2.8339 -4.0718 17 1 13.3370 3.4769 -4.9992 18 1 15.1551 3.8758 -3.4453 19 1 15.1568 1.8831 -4.8273 20 6 4.6448 0.6939 -0.9878 21 6 3.2683 0.6902 -0.9943 22 1 2.7310 -1.2230 1.7632 23 1 5.1876 -1.2175 1.7592 24 1 7.2166 -0.4753 0.6906 25 1 7.2003 0.3219 -2.0190 26 1 7.1997 1.7839 -1.0037 27 1 9.2312 0.9725 0.1645 28 1 9.2312 -0.4893 -0.8510 29 1 9.4691 0.9198 -2.8779 30 1 9.4689 2.3813 -1.8617 31 1 11.4998 1.5703 -0.6937 32 1 11.5007 0.1086 -1.7095 33 1 14.9965 1.2625 -1.8072 34 1 5.1864 1.2307 -1.7526 35 1 2.7299 1.2234 -1.7640 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149263981.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:37 Heat of formation + Delta-G solvation = 28.172473 kcal Electronic energy + Delta-G solvation = -15536.079329 eV Core-core repulsion = 12918.932589 eV Total energy + Delta-G solvation = -2617.146740 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.82420 -37.16594 -36.02697 -34.27038 -32.42085 -31.32198 -30.14918 -28.00700 -25.04948 -23.34622 -22.82335 -21.37339 -20.24214 -19.00506 -17.40774 -16.29429 -16.04860 -15.45220 -14.76301 -14.57046 -14.27670 -14.16631 -13.81718 -13.67464 -13.46621 -12.76984 -12.63679 -12.44215 -12.26204 -11.86877 -11.64004 -11.25825 -11.17255 -10.86385 -10.64472 -10.53009 -10.12989 -9.78766 -9.40679 -9.28550 -9.11252 -8.40670 -7.63746 -6.05461 -4.08026 0.83050 1.18478 2.60053 2.88318 3.23880 3.27322 3.35205 3.38984 3.78699 3.89762 4.41504 4.59624 4.67063 5.05359 5.07168 5.21861 5.25645 5.30864 5.39467 5.57745 5.72311 5.86910 5.94068 6.01485 6.05251 6.20370 6.24874 6.47974 6.60969 6.75004 6.98935 7.11349 7.43271 7.49756 7.61052 7.74080 7.94201 8.36503 8.99476 9.56645 11.05885 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.069009 B = 0.002817 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.647431 B = 9938.415207 C =10313.010476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.268 3.732 3 C -0.112 4.112 4 C -0.017 4.017 5 C -0.206 4.206 6 C 0.254 3.746 7 N -0.732 5.732 8 C 0.116 3.884 9 C -0.130 4.130 10 C -0.107 4.107 11 C 0.020 3.980 12 C -0.521 4.521 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.205 4.205 21 C -0.016 4.016 22 H 0.128 0.872 23 H 0.129 0.871 24 H 0.403 0.597 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.015 0.985 32 H 0.015 0.985 33 H 0.260 0.740 34 H 0.133 0.867 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.867 -3.339 4.797 17.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.046 4.046 3 C -0.118 4.118 4 C -0.039 4.039 5 C -0.229 4.229 6 C 0.144 3.856 7 N -0.356 5.356 8 C -0.008 4.008 9 C -0.168 4.168 10 C -0.145 4.145 11 C -0.017 4.017 12 C -0.559 4.559 13 H 0.074 0.926 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.228 4.228 21 C -0.037 4.037 22 H 0.146 0.854 23 H 0.147 0.853 24 H 0.239 0.761 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.151 0.849 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.305 -3.260 4.683 19.174 hybrid contribution 1.359 0.286 -0.413 1.449 sum -16.946 -2.974 4.270 17.727 Atomic orbital electron populations 1.81234 1.12296 1.09978 1.08779 1.25782 0.92682 0.92968 0.93197 1.15747 0.84030 1.09941 1.02085 1.20810 0.93373 0.94313 0.95393 1.20506 0.93817 1.06971 1.01580 1.18146 0.84131 0.90848 0.92435 1.45053 1.02457 1.56125 1.31970 1.21673 0.92683 0.96069 0.90365 1.21871 0.91755 1.01831 1.01322 1.21562 0.98558 0.98385 0.96026 1.19101 0.88358 0.97146 0.97067 1.21294 0.91294 1.31752 1.11604 0.92616 1.25036 0.97939 0.95627 0.95952 1.69966 1.07484 1.42536 1.33530 0.86542 0.79922 0.79676 0.81904 1.19720 1.21005 1.21000 1.20618 0.93743 1.06594 1.01812 1.20872 0.93464 0.94083 0.95289 0.85398 0.85263 0.76149 0.91810 0.91810 0.91768 0.91761 0.93102 0.93103 0.96629 0.96634 0.93031 0.84917 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -5.86 18.54 41.84 0.78 -5.08 16 2 C 0.27 2.90 15.33 -22.47 -0.34 2.55 16 3 C -0.11 -1.01 5.74 -106.80 -0.61 -1.62 16 4 C -0.02 -0.14 9.75 -39.21 -0.38 -0.52 16 5 C -0.21 -1.64 9.87 -39.45 -0.39 -2.03 16 6 C 0.25 2.34 6.65 -83.82 -0.56 1.78 16 7 N -0.73 -6.91 5.71 -58.62 -0.33 -7.24 16 8 C 0.12 1.26 4.90 -4.04 -0.02 1.24 16 9 C -0.13 -1.81 5.33 -26.73 -0.14 -1.95 16 10 C -0.11 -1.96 5.15 -26.73 -0.14 -2.10 16 11 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 12 C -0.52 -14.29 9.11 -34.44 -0.31 -14.61 16 13 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16 16 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C -0.20 -1.84 9.28 -39.45 -0.37 -2.20 16 21 C -0.02 -0.13 9.75 -39.21 -0.38 -0.51 16 22 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 23 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 24 H 0.40 3.33 8.48 -40.82 -0.35 2.99 16 25 H 0.06 0.69 7.94 -51.93 -0.41 0.27 16 26 H 0.06 0.69 7.93 -51.93 -0.41 0.28 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.13 1.11 6.70 -52.49 -0.35 0.76 16 35 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 LS Contribution 309.80 15.07 4.67 4.67 Total: -1.00 -30.52 309.80 -7.93 -38.45 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -4.87 Total: -3.16 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -3.88 Total: -18.15 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 1.18 Total: -37.96 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.52 -7.93 -38.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149263981.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.623 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds