Wall clock time and date at job start Mon Mar 30 2020 06:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39806 * 120.07821 * 304.75183 * 3 2 1 5 5 C 1.37648 * 119.92986 * 180.02562 * 4 3 2 6 6 C 1.39183 * 120.06861 * 359.97438 * 5 4 3 7 7 N 1.39187 * 119.91862 * 180.02562 * 6 5 4 8 8 C 1.46506 * 119.99974 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47289 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47131 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.47238 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99515 * 359.97438 * 12 11 10 14 14 C 1.37870 * 120.00176 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00145 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00043 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47216 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47057 * 120.00171 * 16 14 12 19 19 H 1.48500 * 109.47389 * 240.00151 * 16 14 12 20 20 C 1.39171 * 120.15377 * 0.27360 * 6 5 4 21 21 C 1.37649 * 120.07392 * 359.45351 * 20 6 5 22 22 H 1.08009 * 120.03339 * 0.02562 * 4 3 2 23 23 H 1.08001 * 119.96739 * 179.97438 * 5 4 3 24 24 H 0.97001 * 120.00775 * 359.97438 * 7 6 5 25 25 H 1.09001 * 109.47060 * 300.00400 * 8 7 6 26 26 H 1.09004 * 109.47073 * 59.99888 * 8 7 6 27 27 H 1.09001 * 109.46832 * 299.99854 * 9 8 7 28 28 H 1.08996 * 109.46952 * 59.99873 * 9 8 7 29 29 H 1.09001 * 109.46997 * 299.99574 * 10 9 8 30 30 H 1.09004 * 109.47298 * 59.99717 * 10 9 8 31 31 H 1.08998 * 109.47076 * 299.99221 * 11 10 9 32 32 H 1.09001 * 109.47502 * 60.00153 * 11 10 9 33 33 H 0.96999 * 120.00284 * 179.97438 * 15 14 12 34 34 H 1.08000 * 119.96345 * 179.70085 * 20 6 5 35 35 H 1.08007 * 120.03910 * 180.27716 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 -0.6887 0.9940 5 6 4.6455 -0.6856 0.9914 6 6 5.3394 0.0024 0.0002 7 7 6.7313 0.0030 0.0003 8 6 7.4635 0.7270 -1.0419 9 6 8.9678 0.5677 -0.8126 10 6 9.7324 1.3243 -1.9005 11 6 11.2367 1.1655 -1.6709 12 6 11.9899 1.9103 -2.7429 13 1 11.4496 2.4432 -3.5114 14 6 13.3686 1.9114 -2.7426 15 7 14.0265 1.2620 -1.8072 16 14 14.3022 2.8339 -4.0718 17 1 13.3370 3.4769 -4.9992 18 1 15.1551 3.8758 -3.4453 19 1 15.1568 1.8831 -4.8273 20 6 4.6448 0.6939 -0.9878 21 6 3.2683 0.6902 -0.9943 22 1 2.7310 -1.2230 1.7632 23 1 5.1876 -1.2175 1.7592 24 1 7.2166 -0.4753 0.6906 25 1 7.2003 0.3219 -2.0190 26 1 7.1997 1.7839 -1.0037 27 1 9.2312 0.9725 0.1645 28 1 9.2312 -0.4893 -0.8510 29 1 9.4691 0.9198 -2.8779 30 1 9.4689 2.3813 -1.8617 31 1 11.4998 1.5703 -0.6937 32 1 11.5007 0.1086 -1.7095 33 1 14.9965 1.2625 -1.8072 34 1 5.1864 1.2307 -1.7526 35 1 2.7299 1.2234 -1.7640 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000149263981.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:37 Heat of formation + Delta-G solvation = 11.479606 kcal Electronic energy + Delta-G solvation = -15536.803186 eV Core-core repulsion = 12918.932589 eV Total energy + Delta-G solvation = -2617.870597 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.50595 -38.05934 -37.05834 -35.74477 -34.10297 -31.99045 -31.29378 -29.28956 -26.55288 -24.23503 -23.85823 -22.39767 -21.73330 -19.71184 -18.51213 -18.00051 -16.90248 -16.55391 -16.44632 -15.43427 -15.13386 -15.05950 -14.65382 -14.65225 -14.40439 -14.29976 -13.73471 -13.54077 -13.49460 -13.08684 -12.89972 -12.88875 -12.35304 -12.29346 -12.20758 -11.77562 -11.42031 -11.28748 -11.03879 -10.89123 -10.54046 -9.90877 -8.35411 -8.18943 -6.29319 0.12206 0.56611 1.41049 1.41889 1.54577 1.76200 2.10557 2.40873 2.49130 3.08958 3.12958 3.14724 3.95547 4.07155 4.08704 4.17486 4.42809 4.45717 4.63654 4.72995 4.73191 4.88977 4.90425 5.12593 5.23673 5.26145 5.32064 5.35239 5.39633 5.55734 5.57620 5.81044 5.81850 5.90236 6.27765 6.34496 6.61786 6.81622 6.89397 7.40267 8.92893 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.069009 B = 0.002817 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.647431 B = 9938.415207 C =10313.010476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.289 3.711 3 C -0.122 4.122 4 C -0.014 4.014 5 C -0.204 4.204 6 C 0.245 3.755 7 N -0.731 5.731 8 C 0.128 3.872 9 C -0.119 4.119 10 C -0.097 4.097 11 C 0.020 3.980 12 C -0.541 4.541 13 H 0.061 0.939 14 C -0.003 4.003 15 N -0.934 5.934 16 Si 0.962 3.038 17 H -0.261 1.261 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.214 4.214 21 C -0.014 4.014 22 H 0.147 0.853 23 H 0.148 0.852 24 H 0.409 0.591 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.055 0.945 31 H -0.009 1.009 32 H -0.009 1.009 33 H 0.263 0.737 34 H 0.138 0.862 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.410 -3.038 4.363 18.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.023 4.023 3 C -0.129 4.129 4 C -0.035 4.035 5 C -0.227 4.227 6 C 0.136 3.864 7 N -0.357 5.357 8 C 0.004 3.996 9 C -0.156 4.156 10 C -0.135 4.135 11 C -0.017 4.017 12 C -0.579 4.579 13 H 0.079 0.921 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.787 3.213 17 H -0.185 1.185 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.237 4.237 21 C -0.035 4.035 22 H 0.164 0.836 23 H 0.166 0.834 24 H 0.245 0.755 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.009 0.991 32 H 0.009 0.991 33 H 0.071 0.929 34 H 0.156 0.844 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.870 -2.961 4.253 19.569 hybrid contribution 1.559 0.170 -0.245 1.587 sum -17.312 -2.792 4.008 17.987 Atomic orbital electron populations 1.81253 1.13621 1.11725 1.10388 1.26010 0.92834 0.91637 0.91856 1.15862 0.83044 1.10944 1.03016 1.21026 0.93455 0.93714 0.95290 1.20709 0.93840 1.06542 1.01574 1.18321 0.83894 0.91232 0.92953 1.44898 1.02636 1.56282 1.31862 1.21403 0.90420 0.96710 0.91072 1.21653 0.93554 1.00914 0.99525 1.21354 0.94746 0.99500 0.97868 1.19047 0.92568 0.94936 0.95123 1.21793 0.92027 1.31806 1.12290 0.92085 1.25982 0.99188 0.96587 0.98330 1.70094 1.07866 1.44051 1.35493 0.85434 0.78504 0.78316 0.79015 1.18473 1.20546 1.20539 1.20743 0.93957 1.06868 1.02088 1.21016 0.93418 0.93725 0.95343 0.83570 0.83412 0.75478 0.91290 0.91284 0.91928 0.91920 0.92621 0.92622 0.99088 0.99096 0.92868 0.84414 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.72 18.54 19.00 0.35 -12.36 16 2 C 0.29 5.96 15.33 88.33 1.35 7.31 16 3 C -0.12 -1.98 5.74 -21.27 -0.12 -2.10 16 4 C -0.01 -0.18 9.75 22.51 0.22 0.04 16 5 C -0.20 -2.72 9.87 22.36 0.22 -2.50 16 6 C 0.24 3.93 6.65 38.43 0.26 4.19 16 7 N -0.73 -12.16 5.71 -339.37 -1.94 -14.10 16 8 C 0.13 2.52 4.90 86.38 0.42 2.95 16 9 C -0.12 -3.16 5.33 30.59 0.16 -3.00 16 10 C -0.10 -3.46 5.15 30.59 0.16 -3.31 16 11 C 0.02 1.02 4.97 29.85 0.15 1.16 16 12 C -0.54 -29.81 9.11 25.60 0.23 -29.58 16 13 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 14 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 15 N -0.93 -55.88 13.29 21.44 0.28 -55.60 16 16 Si 0.96 43.29 29.54 68.60 2.03 45.31 16 17 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 20 C -0.21 -3.37 9.28 22.35 0.21 -3.16 16 21 C -0.01 -0.21 9.75 22.51 0.22 0.01 16 22 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 23 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 24 H 0.41 5.87 8.48 -92.71 -0.79 5.09 16 25 H 0.07 1.32 7.94 -2.39 -0.02 1.30 16 26 H 0.07 1.32 7.93 -2.38 -0.02 1.30 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 31 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 32 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 33 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 34 H 0.14 2.00 6.70 -2.91 -0.02 1.98 16 35 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -65.74 309.80 4.96 -60.77 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: 0.30 Total: 3.70 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 3.94 Total: -27.72 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -1.30 Total: -82.06 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -65.74 4.96 -60.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149263981.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.253 kcal (2) G-P(sol) polarization free energy of solvation -65.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds