Wall clock time and date at job start Mon Mar 30 2020 06:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86805 * 119.99679 * 2 1 4 4 H 1.48507 * 109.46982 * 275.39044 * 3 2 1 5 5 H 1.48499 * 109.47035 * 35.38645 * 3 2 1 6 6 H 1.48498 * 109.47204 * 155.38928 * 3 2 1 7 7 C 1.39888 * 120.00362 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99835 * 342.44554 * 7 2 1 9 9 C 1.41030 * 119.99869 * 162.17419 * 7 2 1 10 10 C 1.40663 * 120.26688 * 329.62608 * 9 7 2 11 11 C 1.38002 * 119.77109 * 179.97438 * 10 9 7 12 12 N 1.39856 * 119.84393 * 180.02562 * 11 10 9 13 13 C 1.46499 * 120.00164 * 179.97438 * 12 11 10 14 14 C 1.54632 * 111.03836 * 270.32919 * 13 12 11 15 15 C 1.51167 * 104.69474 * 217.36153 * 14 13 12 16 16 C 1.30523 * 111.12118 * 16.38781 * 15 14 13 17 17 C 1.51103 * 111.10165 * 0.02672 * 16 15 14 18 18 C 1.39599 * 120.32190 * 0.02654 * 11 10 9 19 19 C 1.38064 * 120.54696 * 359.95190 * 18 11 10 20 20 C 1.38738 * 120.22018 * 359.78593 * 19 18 11 21 21 N 1.38860 * 120.16453 * 180.25163 * 20 19 18 22 22 H 0.97000 * 120.00578 * 359.97438 * 1 2 3 23 23 H 1.08004 * 120.11522 * 0.02562 * 10 9 7 24 24 H 0.97000 * 119.99399 * 359.97438 * 12 11 10 25 25 H 1.08994 * 110.91416 * 34.30088 * 13 12 11 26 26 H 1.09003 * 110.38844 * 336.15253 * 14 13 12 27 27 H 1.09004 * 110.38295 * 98.52101 * 14 13 12 28 28 H 1.08000 * 124.43112 * 196.40407 * 15 14 13 29 29 H 1.07998 * 124.44599 * 180.02562 * 16 15 14 30 30 H 1.08998 * 110.38820 * 224.74796 * 17 16 15 31 31 H 1.09002 * 110.47911 * 102.42765 * 17 16 15 32 32 H 1.07996 * 119.73051 * 179.97438 * 18 11 10 33 33 H 1.08001 * 119.88723 * 180.02562 * 19 18 11 34 34 H 0.97004 * 120.00056 * 180.23549 * 21 20 19 35 35 H 0.96995 * 120.00090 * 0.24521 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.3765 2.1123 -1.3940 5 1 1.5019 2.6172 0.8108 6 1 3.5928 1.4102 0.5831 7 6 2.0085 -1.2114 -0.0005 8 1 1.5063 -2.1251 0.2812 9 6 3.3680 -1.2405 -0.3744 10 6 3.8668 -0.3132 -1.3072 11 6 5.1990 -0.3505 -1.6654 12 7 5.6966 0.5710 -2.5922 13 6 7.1104 0.5349 -2.9745 14 6 7.9611 1.4259 -2.0399 15 6 8.9990 2.0496 -2.9448 16 6 8.6569 1.9385 -4.1995 17 6 7.3336 1.2230 -4.3412 18 6 6.0524 -1.3037 -1.1070 19 6 5.5771 -2.2198 -0.1899 20 6 4.2430 -2.1993 0.1904 21 7 3.7673 -3.1179 1.1167 22 1 -0.4851 0.8400 0.0004 23 1 3.2095 0.4260 -1.7410 24 1 5.1055 1.2341 -2.9820 25 1 7.4842 -0.4889 -2.9862 26 1 7.3415 2.1982 -1.5840 27 1 8.4411 0.8202 -1.2712 28 1 9.9050 2.5245 -2.5983 29 1 9.2427 2.3093 -5.0275 30 1 7.3872 0.4795 -5.1365 31 1 6.5341 1.9360 -4.5424 32 1 7.0933 -1.3246 -1.3944 33 1 6.2469 -2.9524 0.2357 34 1 2.8333 -3.1035 1.3783 35 1 4.3689 -3.7737 1.5023 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166388031.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:44 Heat of formation + Delta-G solvation = 40.717501 kcal Electronic energy + Delta-G solvation = -17120.756885 eV Core-core repulsion = 14504.154139 eV Total energy + Delta-G solvation = -2616.602747 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.01969 -37.74492 -34.66618 -33.37477 -31.67957 -30.21665 -28.18243 -28.01024 -25.47388 -24.72119 -21.76855 -20.56759 -19.54756 -18.68901 -17.26581 -16.53472 -16.00368 -15.64430 -15.36898 -14.81772 -14.37573 -13.12133 -13.07159 -12.74900 -12.51307 -12.41024 -12.11271 -12.00259 -11.91143 -11.46981 -11.21741 -11.10053 -11.01153 -10.70586 -10.47631 -10.00206 -9.75240 -9.49820 -9.00735 -8.86277 -7.93999 -7.48689 -6.79242 -5.79970 -4.18833 2.26100 2.77614 3.03559 3.21347 3.37815 3.45303 4.12460 4.18114 4.66892 4.74943 4.86041 5.26652 5.30559 5.34595 5.59379 5.65443 5.76153 5.86964 6.00923 6.10186 6.14922 6.27848 6.41275 6.54048 6.75157 6.85278 6.89602 7.18937 7.30379 7.43116 7.55587 7.75370 7.99403 8.31747 8.47198 8.60005 8.68519 8.90770 9.08944 9.15436 10.24275 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024850 B = 0.007302 C = 0.006078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.503937 B = 3833.667850 C = 4605.849183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.085 3.915 3 Si 0.915 3.085 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.245 1.245 7 C -0.451 4.451 8 H 0.086 0.914 9 C 0.081 3.919 10 C -0.272 4.272 11 C 0.197 3.803 12 N -0.754 5.754 13 C 0.160 3.840 14 C -0.122 4.122 15 C -0.160 4.160 16 C -0.172 4.172 17 C -0.108 4.108 18 C -0.254 4.254 19 C -0.144 4.144 20 C 0.099 3.901 21 N -0.885 5.885 22 H 0.281 0.719 23 H 0.098 0.902 24 H 0.388 0.612 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.393 0.607 35 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.179 2.844 -4.357 13.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.132 4.132 3 Si 0.743 3.257 4 H -0.203 1.203 5 H -0.226 1.226 6 H -0.168 1.168 7 C -0.481 4.481 8 H 0.104 0.896 9 C 0.075 3.925 10 C -0.296 4.296 11 C 0.098 3.902 12 N -0.387 5.387 13 C 0.053 3.947 14 C -0.161 4.161 15 C -0.178 4.178 16 C -0.191 4.191 17 C -0.146 4.146 18 C -0.278 4.278 19 C -0.169 4.169 20 C -0.003 4.003 21 N -0.428 5.428 22 H 0.091 0.909 23 H 0.116 0.884 24 H 0.221 0.779 25 H 0.105 0.895 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.222 0.778 35 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 12.062 2.914 -4.391 13.163 hybrid contribution -0.014 0.908 0.049 0.909 sum 12.048 3.822 -4.343 13.365 Atomic orbital electron populations 1.69735 1.07951 1.29744 1.37451 1.26044 0.94607 1.01428 0.91109 0.86237 0.81224 0.79919 0.78310 1.20296 1.22645 1.16837 1.19084 0.93024 0.95620 1.40393 0.89590 1.17124 0.92612 0.91364 0.91392 1.20208 0.93635 1.07955 1.07779 1.17342 0.92290 0.90004 0.90529 1.44427 1.07497 1.37521 1.49256 1.21433 0.82902 0.98615 0.91781 1.22005 0.96205 0.99316 0.98524 1.23330 0.98914 1.00036 0.95515 1.23156 0.97393 1.01207 0.97306 1.21610 0.95807 0.99068 0.98074 1.19644 0.97465 1.02599 1.08108 1.19801 0.93470 1.01363 1.02273 1.17762 0.91992 0.95564 0.94994 1.41864 1.12685 1.38075 1.50149 0.90914 0.88381 0.77873 0.89527 0.90310 0.91071 0.86271 0.86127 0.90931 0.90541 0.89022 0.89173 0.77848 0.79820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.44 13.93 55.55 0.77 -21.66 16 2 C 0.08 2.26 5.41 -17.33 -0.09 2.17 16 3 Si 0.92 21.72 24.52 -169.99 -4.17 17.55 16 4 H -0.28 -6.36 6.72 56.52 0.38 -5.98 16 5 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.25 -6.04 6.86 56.52 0.39 -5.65 16 7 C -0.45 -12.20 8.90 -37.91 -0.34 -12.54 16 8 H 0.09 2.39 7.05 -52.49 -0.37 2.02 16 9 C 0.08 2.07 5.11 -106.66 -0.54 1.52 16 10 C -0.27 -6.65 6.98 -38.75 -0.27 -6.92 16 11 C 0.20 4.32 6.64 -83.78 -0.56 3.76 16 12 N -0.75 -13.66 5.35 -50.52 -0.27 -13.93 16 13 C 0.16 2.39 3.15 -66.21 -0.21 2.18 16 14 C -0.12 -1.71 6.55 -26.80 -0.18 -1.88 16 15 C -0.16 -1.86 10.78 -35.66 -0.38 -2.24 16 16 C -0.17 -1.91 10.78 -35.70 -0.38 -2.30 16 17 C -0.11 -1.33 6.54 -26.83 -0.18 -1.50 16 18 C -0.25 -5.40 9.22 -39.14 -0.36 -5.76 16 19 C -0.14 -3.11 9.86 -39.46 -0.39 -3.50 16 20 C 0.10 2.29 6.79 -83.23 -0.56 1.73 16 21 N -0.89 -17.63 8.98 32.75 0.29 -17.34 16 22 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 23 H 0.10 2.43 4.77 -52.48 -0.25 2.18 16 24 H 0.39 6.70 8.40 -40.82 -0.34 6.36 16 25 H 0.09 1.34 6.52 -51.93 -0.34 1.00 16 26 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 29 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.93 7.79 -51.93 -0.40 0.53 16 32 H 0.09 1.75 6.21 -52.49 -0.33 1.42 16 33 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.39 7.91 7.14 -40.82 -0.29 7.62 16 35 H 0.38 6.24 8.83 -40.82 -0.36 5.88 16 LS Contribution 283.69 15.07 4.28 4.28 Total: -1.00 -28.44 283.69 -7.93 -36.37 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -4.39 Total: 20.02 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -4.45 Total: -25.28 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.80 Total: -52.93 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.17 Total: 17.55 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.44 -7.93 -36.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166388031.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.088 kcal (2) G-P(sol) polarization free energy of solvation -28.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds