Wall clock time and date at job start Mon Mar 30 2020 06:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86805 * 119.99679 * 2 1 4 4 H 1.48507 * 109.46982 * 275.39044 * 3 2 1 5 5 H 1.48499 * 109.47035 * 35.38645 * 3 2 1 6 6 H 1.48498 * 109.47204 * 155.38928 * 3 2 1 7 7 C 1.39888 * 120.00362 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99835 * 342.44554 * 7 2 1 9 9 C 1.41030 * 119.99869 * 162.17419 * 7 2 1 10 10 C 1.40663 * 120.26688 * 329.62608 * 9 7 2 11 11 C 1.38002 * 119.77109 * 179.97438 * 10 9 7 12 12 N 1.39856 * 119.84393 * 180.02562 * 11 10 9 13 13 C 1.46499 * 120.00164 * 179.97438 * 12 11 10 14 14 C 1.54632 * 111.03836 * 270.32919 * 13 12 11 15 15 C 1.51167 * 104.69474 * 217.36153 * 14 13 12 16 16 C 1.30523 * 111.12118 * 16.38781 * 15 14 13 17 17 C 1.51103 * 111.10165 * 0.02672 * 16 15 14 18 18 C 1.39599 * 120.32190 * 0.02654 * 11 10 9 19 19 C 1.38064 * 120.54696 * 359.95190 * 18 11 10 20 20 C 1.38738 * 120.22018 * 359.78593 * 19 18 11 21 21 N 1.38860 * 120.16453 * 180.25163 * 20 19 18 22 22 H 0.97000 * 120.00578 * 359.97438 * 1 2 3 23 23 H 1.08004 * 120.11522 * 0.02562 * 10 9 7 24 24 H 0.97000 * 119.99399 * 359.97438 * 12 11 10 25 25 H 1.08994 * 110.91416 * 34.30088 * 13 12 11 26 26 H 1.09003 * 110.38844 * 336.15253 * 14 13 12 27 27 H 1.09004 * 110.38295 * 98.52101 * 14 13 12 28 28 H 1.08000 * 124.43112 * 196.40407 * 15 14 13 29 29 H 1.07998 * 124.44599 * 180.02562 * 16 15 14 30 30 H 1.08998 * 110.38820 * 224.74796 * 17 16 15 31 31 H 1.09002 * 110.47911 * 102.42765 * 17 16 15 32 32 H 1.07996 * 119.73051 * 179.97438 * 18 11 10 33 33 H 1.08001 * 119.88723 * 180.02562 * 19 18 11 34 34 H 0.97004 * 120.00056 * 180.23549 * 21 20 19 35 35 H 0.96995 * 120.00090 * 0.24521 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.3765 2.1123 -1.3940 5 1 1.5019 2.6172 0.8108 6 1 3.5928 1.4102 0.5831 7 6 2.0085 -1.2114 -0.0005 8 1 1.5063 -2.1251 0.2812 9 6 3.3680 -1.2405 -0.3744 10 6 3.8668 -0.3132 -1.3072 11 6 5.1990 -0.3505 -1.6654 12 7 5.6966 0.5710 -2.5922 13 6 7.1104 0.5349 -2.9745 14 6 7.9611 1.4259 -2.0399 15 6 8.9990 2.0496 -2.9448 16 6 8.6569 1.9385 -4.1995 17 6 7.3336 1.2230 -4.3412 18 6 6.0524 -1.3037 -1.1070 19 6 5.5771 -2.2198 -0.1899 20 6 4.2430 -2.1993 0.1904 21 7 3.7673 -3.1179 1.1167 22 1 -0.4851 0.8400 0.0004 23 1 3.2095 0.4260 -1.7410 24 1 5.1055 1.2341 -2.9820 25 1 7.4842 -0.4889 -2.9862 26 1 7.3415 2.1982 -1.5840 27 1 8.4411 0.8202 -1.2712 28 1 9.9050 2.5245 -2.5983 29 1 9.2427 2.3093 -5.0275 30 1 7.3872 0.4795 -5.1365 31 1 6.5341 1.9360 -4.5424 32 1 7.0933 -1.3246 -1.3944 33 1 6.2469 -2.9524 0.2357 34 1 2.8333 -3.1035 1.3783 35 1 4.3689 -3.7737 1.5023 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166388031.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:44 Heat of formation + Delta-G solvation = 22.460303 kcal Electronic energy + Delta-G solvation = -17121.548577 eV Core-core repulsion = 14504.154139 eV Total energy + Delta-G solvation = -2617.394438 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.37199 -39.24342 -36.20113 -35.28747 -33.22540 -32.07215 -29.49912 -29.07687 -27.02630 -26.50755 -23.52474 -21.97394 -21.13535 -19.62600 -19.09556 -18.08732 -17.62103 -16.93694 -16.89427 -16.39337 -16.00807 -14.97433 -14.69532 -14.28858 -14.04670 -13.70287 -13.64587 -13.48014 -13.02469 -12.97693 -12.94191 -12.57793 -12.41163 -12.14386 -12.03537 -11.71053 -11.52002 -11.30965 -10.90275 -9.78415 -9.49184 -9.36196 -8.77792 -7.50653 -6.15451 0.91979 1.20223 1.28520 1.39462 1.52839 1.53907 2.19462 2.73232 2.82031 3.66900 3.68648 3.76516 3.88548 4.16612 4.40221 4.42981 4.58296 4.70012 4.82066 4.86996 4.92922 5.00044 5.05836 5.08941 5.19073 5.40015 5.49879 5.62566 5.68468 5.80318 5.99186 6.03584 6.20313 6.34655 6.68000 6.87833 6.96834 7.11507 7.31059 7.58678 8.31132 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024850 B = 0.007302 C = 0.006078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.503937 B = 3833.667850 C = 4605.849183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.048 3.952 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.474 4.474 8 H 0.062 0.938 9 C 0.050 3.950 10 C -0.282 4.282 11 C 0.191 3.809 12 N -0.751 5.751 13 C 0.151 3.849 14 C -0.122 4.122 15 C -0.166 4.166 16 C -0.163 4.163 17 C -0.106 4.106 18 C -0.243 4.243 19 C -0.144 4.144 20 C 0.084 3.916 21 N -0.877 5.877 22 H 0.286 0.714 23 H 0.089 0.911 24 H 0.391 0.609 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.141 0.859 29 H 0.148 0.852 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.390 0.610 35 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.328 3.441 -5.416 16.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.164 4.164 3 Si 0.794 3.206 4 H -0.194 1.194 5 H -0.217 1.217 6 H -0.185 1.185 7 C -0.506 4.506 8 H 0.080 0.920 9 C 0.045 3.955 10 C -0.306 4.306 11 C 0.090 3.910 12 N -0.383 5.383 13 C 0.045 3.955 14 C -0.161 4.161 15 C -0.184 4.184 16 C -0.181 4.181 17 C -0.144 4.144 18 C -0.266 4.266 19 C -0.168 4.168 20 C -0.019 4.019 21 N -0.421 5.421 22 H 0.097 0.903 23 H 0.107 0.893 24 H 0.224 0.776 25 H 0.102 0.898 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.158 0.842 29 H 0.166 0.834 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.218 0.782 35 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 15.244 3.508 -5.462 16.569 hybrid contribution -0.782 0.617 0.310 1.043 sum 14.462 4.124 -5.152 15.897 Atomic orbital electron populations 1.69768 1.08826 1.30598 1.40045 1.26600 0.95130 1.03590 0.91055 0.85439 0.79258 0.77375 0.78566 1.19364 1.21686 1.18478 1.19086 0.94119 0.95096 1.42265 0.92028 1.17302 0.92497 0.93107 0.92600 1.20298 0.94837 1.07613 1.07848 1.17438 0.91576 0.90846 0.91101 1.44520 1.09030 1.36566 1.48153 1.21658 0.80981 0.99089 0.93811 1.21935 0.96575 0.98808 0.98736 1.23368 0.99242 1.00701 0.95136 1.23337 0.96580 1.00206 0.97953 1.21601 0.96799 0.99367 0.96605 1.20060 0.98625 1.01295 1.06653 1.20198 0.93127 1.01721 1.01761 1.17975 0.92590 0.95683 0.95625 1.41783 1.12918 1.37874 1.49488 0.90344 0.89335 0.77558 0.89769 0.91933 0.91387 0.84165 0.83443 0.89817 0.90393 0.86322 0.86010 0.78179 0.77776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.84 13.93 21.82 0.30 -48.54 16 2 C 0.05 2.66 5.41 85.23 0.46 3.12 16 3 Si 0.97 45.77 24.52 68.60 1.68 47.45 16 4 H -0.27 -12.07 6.72 99.48 0.67 -11.40 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.26 -12.82 6.86 99.48 0.68 -12.13 16 7 C -0.47 -26.65 8.90 23.35 0.21 -26.45 16 8 H 0.06 3.63 7.05 -2.91 -0.02 3.61 16 9 C 0.05 2.61 5.11 -21.18 -0.11 2.51 16 10 C -0.28 -13.78 6.98 22.81 0.16 -13.62 16 11 C 0.19 8.10 6.64 38.13 0.25 8.35 16 12 N -0.75 -25.83 5.35 -313.74 -1.68 -27.51 16 13 C 0.15 4.10 3.15 46.10 0.15 4.25 16 14 C -0.12 -3.11 6.55 30.55 0.20 -2.91 16 15 C -0.17 -3.29 10.78 26.29 0.28 -3.00 16 16 C -0.16 -2.96 10.78 26.27 0.28 -2.68 16 17 C -0.11 -2.27 6.54 30.53 0.20 -2.07 16 18 C -0.24 -9.64 9.22 22.56 0.21 -9.43 16 19 C -0.14 -5.83 9.86 22.35 0.22 -5.61 16 20 C 0.08 3.85 6.79 38.97 0.26 4.12 16 21 N -0.88 -34.50 8.98 -50.31 -0.45 -34.95 16 22 H 0.29 14.79 8.30 -92.71 -0.77 14.03 16 23 H 0.09 4.42 4.77 -2.91 -0.01 4.41 16 24 H 0.39 12.94 8.40 -92.71 -0.78 12.16 16 25 H 0.08 2.34 6.52 -2.39 -0.02 2.33 16 26 H 0.06 1.80 8.08 -2.39 -0.02 1.78 16 27 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 29 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 31 H 0.08 1.68 7.79 -2.39 -0.02 1.66 16 32 H 0.12 4.06 6.21 -2.91 -0.02 4.04 16 33 H 0.12 4.14 8.06 -2.91 -0.02 4.11 16 34 H 0.39 16.01 7.14 -92.71 -0.66 15.35 16 35 H 0.39 12.43 8.83 -92.71 -0.82 11.61 16 Total: -1.00 -61.79 283.69 1.44 -60.35 By element: Atomic # 1 Polarization: 47.81 SS G_CDS: -1.19 Total: 46.62 kcal Atomic # 6 Polarization: -46.20 SS G_CDS: 2.78 Total: -43.42 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -1.83 Total: -111.00 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.68 Total: 47.45 kcal Total: -61.79 1.44 -60.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166388031.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.809 kcal (2) G-P(sol) polarization free energy of solvation -61.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds