Wall clock time and date at job start Mon Mar 30 2020 06:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86297 * 109.47068 * 2 1 4 4 C 1.86289 * 109.47276 * 239.99573 * 2 1 3 5 5 O 1.63105 * 109.46869 * 119.99474 * 2 1 3 6 6 C 1.42895 * 114.00001 * 60.00342 * 5 2 1 7 7 C 1.50706 * 109.47270 * 269.99954 * 6 5 2 8 8 N 1.27936 * 120.00450 * 114.99776 * 7 6 5 9 9 Si 1.86805 * 119.99342 * 295.00047 * 7 6 5 10 10 H 1.48499 * 109.47217 * 60.00006 * 9 7 6 11 11 H 1.48500 * 109.46599 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47075 * 299.99307 * 9 7 6 13 13 C 1.52998 * 109.47642 * 149.99639 * 6 5 2 14 14 C 1.53175 * 109.54388 * 299.55929 * 13 6 5 15 15 C 1.53094 * 109.16661 * 183.14993 * 14 13 6 16 16 O 1.42898 * 109.41211 * 57.60371 * 15 14 13 17 17 C 1.42897 * 114.10001 * 298.84343 * 16 15 14 18 18 C 1.53089 * 109.41656 * 61.16248 * 17 16 15 19 19 H 1.08998 * 109.47130 * 300.00123 * 1 2 3 20 20 H 1.09002 * 109.46766 * 60.00318 * 1 2 3 21 21 H 1.08997 * 109.47170 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46871 * 180.02562 * 3 2 1 23 23 H 1.09002 * 109.47067 * 299.99497 * 3 2 1 24 24 H 1.08996 * 109.47795 * 59.99430 * 3 2 1 25 25 H 1.09008 * 109.47691 * 300.00238 * 4 2 1 26 26 H 1.08998 * 109.47368 * 59.99891 * 4 2 1 27 27 H 1.09002 * 109.47564 * 180.02562 * 4 2 1 28 28 H 1.09000 * 109.47422 * 29.99550 * 6 5 2 29 29 H 0.96997 * 120.00337 * 179.97438 * 8 7 6 30 30 H 1.09004 * 109.61242 * 59.77348 * 13 6 5 31 31 H 1.09004 * 109.52259 * 303.05258 * 14 13 6 32 32 H 1.09006 * 109.52330 * 63.24092 * 14 13 6 33 33 H 1.09006 * 109.47665 * 297.62062 * 15 14 13 34 34 H 1.08993 * 109.47955 * 177.58818 * 15 14 13 35 35 H 1.09002 * 109.48425 * 301.17758 * 17 16 15 36 36 H 1.09001 * 109.49443 * 181.15303 * 17 16 15 37 37 H 1.08997 * 109.52675 * 182.48845 * 18 17 16 38 38 H 1.08995 * 109.52428 * 62.29514 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5210 5 8 2.4066 -0.7688 1.3318 6 6 1.9850 -2.1306 1.4296 7 6 0.6766 -2.1992 2.1743 8 7 -0.3799 -2.6021 1.5757 9 14 0.5975 -1.6959 3.9716 10 1 1.0135 -0.2768 4.1070 11 1 -0.7928 -1.8533 4.4688 12 1 1.5088 -2.5571 4.7673 13 6 3.0433 -2.9395 2.1824 14 6 4.3711 -2.8800 1.4210 15 6 5.4018 -3.7554 2.1389 16 8 4.9073 -5.0929 2.2307 17 6 3.6923 -5.2162 2.9726 18 6 2.5930 -4.3997 2.2882 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 3.5740 1.7564 -0.0005 23 1 2.1207 2.2702 -0.8900 24 1 2.1207 2.2704 0.8899 25 1 2.1207 -1.9060 -1.5210 26 1 2.1207 -0.3646 -2.4110 27 1 3.5741 -0.8787 -1.5208 28 1 1.8557 -2.5437 0.4293 29 1 -1.2219 -2.6466 2.0552 30 1 3.1774 -2.5258 3.1820 31 1 4.2254 -3.2477 0.4053 32 1 4.7269 -1.8502 1.3891 33 1 5.5771 -3.3630 3.1407 34 1 6.3362 -3.7509 1.5779 35 1 3.8452 -4.8431 3.9853 36 1 3.3952 -6.2642 3.0125 37 1 1.6771 -4.4566 2.8764 38 1 2.4113 -4.7980 1.2900 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203415360.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:08 Heat of formation + Delta-G solvation = -117.491282 kcal Electronic energy + Delta-G solvation = -17391.453728 eV Core-core repulsion = 14777.939572 eV Total energy + Delta-G solvation = -2613.514157 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.136 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.76244 -38.77209 -35.91703 -34.64134 -32.03148 -29.54155 -28.98570 -28.37718 -28.24019 -24.80085 -24.30882 -21.36963 -21.03092 -18.55395 -17.34577 -16.98101 -16.85794 -16.24265 -15.81946 -15.62199 -14.79588 -14.61567 -14.48498 -14.27229 -13.99320 -13.75813 -13.39005 -13.30487 -13.25016 -13.23177 -13.06945 -12.78338 -12.53485 -12.29665 -12.25582 -12.09811 -11.73115 -11.60952 -11.39851 -11.19438 -10.70857 -10.49480 -10.42068 -9.90622 0.57946 0.99360 1.32060 1.40866 1.68791 1.85342 1.88740 2.04424 2.48550 2.97983 3.26073 3.70261 3.78100 3.86050 4.04206 4.23067 4.27956 4.43282 4.54040 4.59268 4.70520 4.71460 4.71915 4.74610 4.76751 4.78326 4.79847 4.82253 4.88522 4.93949 5.08421 5.11707 5.25325 5.37692 5.52803 5.57986 5.67553 6.28493 6.68735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.518 4.518 2 Si 1.256 2.744 3 C -0.468 4.468 4 C -0.508 4.508 5 O -0.613 6.613 6 C 0.156 3.844 7 C -0.031 4.031 8 N -0.610 5.610 9 Si 0.923 3.077 10 H -0.226 1.226 11 H -0.251 1.251 12 H -0.231 1.231 13 C -0.090 4.090 14 C -0.148 4.148 15 C 0.058 3.942 16 O -0.383 6.383 17 C 0.062 3.938 18 C -0.154 4.154 19 H 0.064 0.936 20 H 0.069 0.931 21 H 0.086 0.914 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.342 0.658 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.023 0.669 1.227 1.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.620 4.620 2 Si 1.393 2.607 3 C -0.574 4.574 4 C -0.610 4.610 5 O -0.570 6.570 6 C 0.099 3.901 7 C -0.280 4.280 8 N -0.226 5.226 9 Si 0.739 3.261 10 H -0.148 1.148 11 H -0.174 1.174 12 H -0.154 1.154 13 C -0.109 4.109 14 C -0.186 4.186 15 C -0.018 4.018 16 O -0.301 6.301 17 C -0.015 4.015 18 C -0.192 4.192 19 H 0.083 0.917 20 H 0.088 0.912 21 H 0.105 0.895 22 H 0.092 0.908 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.159 0.841 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.114 0.886 35 H 0.070 0.930 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.021 0.440 1.271 1.345 hybrid contribution -0.892 0.521 0.104 1.038 sum -0.871 0.961 1.375 1.890 Atomic orbital electron populations 1.27163 1.24906 1.05845 1.04050 0.77217 0.63677 0.64161 0.55628 1.26330 1.06870 1.19477 1.04744 1.26959 1.06798 1.08852 1.18350 1.85401 1.78251 1.26673 1.66674 1.20609 0.89110 0.81336 0.99076 1.30894 0.96017 0.94079 1.07036 1.68111 1.02666 1.09222 1.42575 0.85809 0.81794 0.83953 0.74579 1.14779 1.17415 1.15383 1.21343 0.94643 0.94426 1.00503 1.22193 0.94603 1.01732 1.00050 1.22632 0.96788 0.82447 0.99973 1.87960 1.39957 1.27383 1.74820 1.22558 0.84088 1.00773 0.94097 1.22255 0.99254 0.94649 1.03041 0.91688 0.91186 0.89496 0.90761 0.90562 0.90860 0.91259 0.90850 0.90952 0.89799 0.84090 0.89542 0.90760 0.89376 0.92975 0.88608 0.93014 0.88586 0.90843 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.52 -0.08 8.04 101.05 0.81 0.74 16 2 Si 1.26 -1.43 12.68 -169.99 -2.16 -3.59 16 3 C -0.47 0.34 8.65 101.05 0.87 1.21 16 4 C -0.51 0.31 8.56 101.05 0.87 1.18 16 5 O -0.61 0.18 7.33 -35.23 -0.26 -0.08 16 6 C 0.16 -0.06 1.43 -27.88 -0.04 -0.10 16 7 C -0.03 0.01 2.86 -13.90 -0.04 -0.03 16 8 N -0.61 0.02 11.80 56.22 0.66 0.68 16 9 Si 0.92 -0.39 27.04 -169.99 -4.60 -4.99 16 10 H -0.23 -0.08 7.11 56.52 0.40 0.32 16 11 H -0.25 0.03 7.11 56.52 0.40 0.44 16 12 H -0.23 0.18 7.04 56.52 0.40 0.58 16 13 C -0.09 0.06 1.64 -90.44 -0.15 -0.08 16 14 C -0.15 0.13 5.23 -26.59 -0.14 -0.01 16 15 C 0.06 -0.02 6.84 37.21 0.25 0.23 16 16 O -0.38 -0.69 10.76 -35.23 -0.38 -1.07 16 17 C 0.06 -0.02 6.84 37.20 0.25 0.24 16 18 C -0.15 0.13 5.10 -26.59 -0.14 0.00 16 19 H 0.06 0.02 7.96 -51.93 -0.41 -0.40 16 20 H 0.07 0.00 7.96 -51.93 -0.41 -0.42 16 21 H 0.09 0.08 5.71 -51.93 -0.30 -0.22 16 22 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 23 H 0.08 -0.09 7.96 -51.93 -0.41 -0.50 16 24 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 25 H 0.07 -0.02 7.10 -51.92 -0.37 -0.39 16 26 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 27 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 28 H 0.08 -0.06 6.12 -51.93 -0.32 -0.38 16 29 H 0.34 -0.47 8.23 -40.82 -0.34 -0.80 16 30 H 0.09 -0.09 6.62 -51.93 -0.34 -0.43 16 31 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 32 H 0.09 -0.14 7.80 -51.93 -0.41 -0.54 16 33 H 0.05 -0.05 8.14 -51.93 -0.42 -0.48 16 34 H 0.10 -0.12 8.14 -51.93 -0.42 -0.54 16 35 H 0.05 -0.05 8.14 -51.93 -0.42 -0.48 16 36 H 0.10 -0.12 8.14 -51.93 -0.42 -0.54 16 37 H 0.07 -0.12 6.92 -51.93 -0.36 -0.48 16 38 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 LS Contribution 299.15 15.07 4.51 4.51 Total: 0.00 -2.90 299.15 -6.32 -9.22 By element: Atomic # 1 Polarization: -1.40 SS G_CDS: -6.66 Total: -8.06 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 2.56 Total: 3.38 kcal Atomic # 7 Polarization: 0.02 SS G_CDS: 0.66 Total: 0.68 kcal Atomic # 8 Polarization: -0.51 SS G_CDS: -0.64 Total: -1.15 kcal Atomic # 14 Polarization: -1.83 SS G_CDS: -6.75 Total: -8.58 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -2.90 -6.32 -9.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203415360.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.272 kcal (2) G-P(sol) polarization free energy of solvation -2.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds