Wall clock time and date at job start Mon Mar 30 2020 06:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86297 * 109.47068 * 2 1 4 4 C 1.86289 * 109.47276 * 239.99573 * 2 1 3 5 5 O 1.63105 * 109.46869 * 119.99474 * 2 1 3 6 6 C 1.42895 * 114.00001 * 60.00342 * 5 2 1 7 7 C 1.50706 * 109.47270 * 269.99954 * 6 5 2 8 8 N 1.27936 * 120.00450 * 114.99776 * 7 6 5 9 9 Si 1.86805 * 119.99342 * 295.00047 * 7 6 5 10 10 H 1.48499 * 109.47217 * 60.00006 * 9 7 6 11 11 H 1.48500 * 109.46599 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47075 * 299.99307 * 9 7 6 13 13 C 1.52998 * 109.47642 * 149.99639 * 6 5 2 14 14 C 1.53175 * 109.54388 * 299.55929 * 13 6 5 15 15 C 1.53094 * 109.16661 * 183.14993 * 14 13 6 16 16 O 1.42898 * 109.41211 * 57.60371 * 15 14 13 17 17 C 1.42897 * 114.10001 * 298.84343 * 16 15 14 18 18 C 1.53089 * 109.41656 * 61.16248 * 17 16 15 19 19 H 1.08998 * 109.47130 * 300.00123 * 1 2 3 20 20 H 1.09002 * 109.46766 * 60.00318 * 1 2 3 21 21 H 1.08997 * 109.47170 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46871 * 180.02562 * 3 2 1 23 23 H 1.09002 * 109.47067 * 299.99497 * 3 2 1 24 24 H 1.08996 * 109.47795 * 59.99430 * 3 2 1 25 25 H 1.09008 * 109.47691 * 300.00238 * 4 2 1 26 26 H 1.08998 * 109.47368 * 59.99891 * 4 2 1 27 27 H 1.09002 * 109.47564 * 180.02562 * 4 2 1 28 28 H 1.09000 * 109.47422 * 29.99550 * 6 5 2 29 29 H 0.96997 * 120.00337 * 179.97438 * 8 7 6 30 30 H 1.09004 * 109.61242 * 59.77348 * 13 6 5 31 31 H 1.09004 * 109.52259 * 303.05258 * 14 13 6 32 32 H 1.09006 * 109.52330 * 63.24092 * 14 13 6 33 33 H 1.09006 * 109.47665 * 297.62062 * 15 14 13 34 34 H 1.08993 * 109.47955 * 177.58818 * 15 14 13 35 35 H 1.09002 * 109.48425 * 301.17758 * 17 16 15 36 36 H 1.09001 * 109.49443 * 181.15303 * 17 16 15 37 37 H 1.08997 * 109.52675 * 182.48845 * 18 17 16 38 38 H 1.08995 * 109.52428 * 62.29514 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5210 5 8 2.4066 -0.7688 1.3318 6 6 1.9850 -2.1306 1.4296 7 6 0.6766 -2.1992 2.1743 8 7 -0.3799 -2.6021 1.5757 9 14 0.5975 -1.6959 3.9716 10 1 1.0135 -0.2768 4.1070 11 1 -0.7928 -1.8533 4.4688 12 1 1.5088 -2.5571 4.7673 13 6 3.0433 -2.9395 2.1824 14 6 4.3711 -2.8800 1.4210 15 6 5.4018 -3.7554 2.1389 16 8 4.9073 -5.0929 2.2307 17 6 3.6923 -5.2162 2.9726 18 6 2.5930 -4.3997 2.2882 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 3.5740 1.7564 -0.0005 23 1 2.1207 2.2702 -0.8900 24 1 2.1207 2.2704 0.8899 25 1 2.1207 -1.9060 -1.5210 26 1 2.1207 -0.3646 -2.4110 27 1 3.5741 -0.8787 -1.5208 28 1 1.8557 -2.5437 0.4293 29 1 -1.2219 -2.6466 2.0552 30 1 3.1774 -2.5258 3.1820 31 1 4.2254 -3.2477 0.4053 32 1 4.7269 -1.8502 1.3891 33 1 5.5771 -3.3630 3.1407 34 1 6.3362 -3.7509 1.5779 35 1 3.8452 -4.8431 3.9853 36 1 3.3952 -6.2642 3.0125 37 1 1.6771 -4.4566 2.8764 38 1 2.4113 -4.7980 1.2900 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203415360.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:08 Heat of formation + Delta-G solvation = -108.225232 kcal Electronic energy + Delta-G solvation = -17391.051922 eV Core-core repulsion = 14777.939572 eV Total energy + Delta-G solvation = -2613.112351 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.71495 -38.74708 -35.88709 -34.60827 -31.95914 -29.49521 -28.94135 -28.35086 -28.18797 -24.74694 -24.25100 -21.31462 -20.97963 -18.51174 -17.30097 -16.95390 -16.82559 -16.20230 -15.76308 -15.57861 -14.74554 -14.58551 -14.42179 -14.22440 -13.95112 -13.73372 -13.32485 -13.23998 -13.20328 -13.19270 -13.03007 -12.74590 -12.50431 -12.22935 -12.20262 -12.05857 -11.69170 -11.52604 -11.34880 -11.13461 -10.66137 -10.47143 -10.39682 -9.87118 0.61518 1.02961 1.35802 1.46296 1.72942 1.88543 1.96849 2.10724 2.53433 3.03994 3.32803 3.77012 3.85754 3.94120 4.11753 4.29746 4.36105 4.51105 4.61281 4.66818 4.75384 4.77023 4.78932 4.80697 4.81613 4.83355 4.85690 4.88184 4.91653 4.99352 5.16418 5.19405 5.33051 5.44804 5.58041 5.63845 5.67547 6.33115 6.75847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.528 4.528 2 Si 1.290 2.710 3 C -0.476 4.476 4 C -0.514 4.514 5 O -0.617 6.617 6 C 0.152 3.848 7 C -0.030 4.030 8 N -0.620 5.620 9 Si 0.934 3.066 10 H -0.237 1.237 11 H -0.256 1.256 12 H -0.223 1.223 13 C -0.092 4.092 14 C -0.146 4.146 15 C 0.054 3.946 16 O -0.406 6.406 17 C 0.057 3.943 18 C -0.152 4.152 19 H 0.061 0.939 20 H 0.070 0.930 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.348 0.652 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.203 0.776 1.406 1.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.629 4.629 2 Si 1.425 2.575 3 C -0.582 4.582 4 C -0.616 4.616 5 O -0.575 6.575 6 C 0.094 3.906 7 C -0.280 4.280 8 N -0.236 5.236 9 Si 0.750 3.250 10 H -0.160 1.160 11 H -0.179 1.179 12 H -0.145 1.145 13 C -0.111 4.111 14 C -0.184 4.184 15 C -0.023 4.023 16 O -0.326 6.326 17 C -0.020 4.020 18 C -0.190 4.190 19 H 0.080 0.920 20 H 0.089 0.911 21 H 0.098 0.902 22 H 0.095 0.905 23 H 0.099 0.901 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.166 0.834 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.188 0.541 1.448 1.557 hybrid contribution -0.967 0.498 0.042 1.088 sum -0.778 1.039 1.490 1.977 Atomic orbital electron populations 1.27319 1.26311 1.05320 1.03947 0.76630 0.62280 0.63583 0.55014 1.26413 1.07111 1.19803 1.04886 1.27038 1.07041 1.08751 1.18730 1.85395 1.78292 1.26770 1.67029 1.20681 0.89219 0.81361 0.99312 1.30943 0.95998 0.93911 1.07131 1.68106 1.03066 1.09471 1.42975 0.85650 0.81565 0.83264 0.74483 1.16026 1.17941 1.14540 1.21376 0.94596 0.94433 1.00713 1.22175 0.94445 1.01993 0.99738 1.22755 0.97128 0.81823 1.00567 1.87921 1.40800 1.28582 1.75279 1.22682 0.83650 1.01342 0.94293 1.22233 0.99433 0.94475 1.02840 0.91972 0.91120 0.90200 0.90514 0.90120 0.91074 0.91589 0.90786 0.90679 0.89599 0.83425 0.89101 0.91133 0.88647 0.92304 0.88067 0.92315 0.88042 0.90015 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.53 -0.35 8.04 113.37 0.91 0.57 16 2 Si 1.29 -2.93 12.68 68.60 0.87 -2.06 16 3 C -0.48 0.78 8.65 113.37 0.98 1.76 16 4 C -0.51 0.65 8.56 113.37 0.97 1.62 16 5 O -0.62 0.46 7.33 -148.98 -1.09 -0.63 16 6 C 0.15 -0.12 1.43 29.85 0.04 -0.08 16 7 C -0.03 0.02 2.86 88.68 0.25 0.27 16 8 N -0.62 -0.08 11.80 24.11 0.28 0.20 16 9 Si 0.93 -0.90 27.04 68.60 1.85 0.96 16 10 H -0.24 -0.23 7.11 99.48 0.71 0.48 16 11 H -0.26 0.06 7.11 99.48 0.71 0.76 16 12 H -0.22 0.51 7.04 99.48 0.70 1.21 16 13 C -0.09 0.15 1.64 -10.68 -0.02 0.13 16 14 C -0.15 0.28 5.23 30.68 0.16 0.44 16 15 C 0.05 -0.04 6.84 72.01 0.49 0.45 16 16 O -0.41 -1.53 10.76 -148.98 -1.60 -3.13 16 17 C 0.06 -0.04 6.84 72.01 0.49 0.45 16 18 C -0.15 0.28 5.10 30.68 0.16 0.43 16 19 H 0.06 0.06 7.96 -2.39 -0.02 0.05 16 20 H 0.07 0.02 7.96 -2.39 -0.02 0.00 16 21 H 0.08 0.18 5.71 -2.39 -0.01 0.16 16 22 H 0.08 -0.16 7.96 -2.39 -0.02 -0.17 16 23 H 0.08 -0.21 7.96 -2.39 -0.02 -0.23 16 24 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 25 H 0.06 -0.03 7.10 -2.38 -0.02 -0.05 16 26 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 27 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 28 H 0.09 -0.12 6.12 -2.39 -0.01 -0.13 16 29 H 0.35 -0.86 8.23 -92.71 -0.76 -1.63 16 30 H 0.09 -0.24 6.62 -2.38 -0.02 -0.25 16 31 H 0.07 -0.09 8.14 -2.38 -0.02 -0.10 16 32 H 0.10 -0.34 7.80 -2.38 -0.02 -0.36 16 33 H 0.06 -0.14 8.14 -2.38 -0.02 -0.16 16 34 H 0.10 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.10 -0.24 8.14 -2.39 -0.02 -0.26 16 37 H 0.08 -0.30 6.92 -2.39 -0.02 -0.32 16 38 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 Total: 0.00 -6.23 299.15 5.76 -0.47 By element: Atomic # 1 Polarization: -2.87 SS G_CDS: 1.01 Total: -1.86 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 4.44 Total: 6.06 kcal Atomic # 7 Polarization: -0.08 SS G_CDS: 0.28 Total: 0.20 kcal Atomic # 8 Polarization: -1.07 SS G_CDS: -2.70 Total: -3.77 kcal Atomic # 14 Polarization: -3.83 SS G_CDS: 2.72 Total: -1.11 kcal Total: -6.23 5.76 -0.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203415360.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.754 kcal (2) G-P(sol) polarization free energy of solvation -6.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -0.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds