Wall clock time and date at job start Mon Mar 30 2020 06:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.47157 * 2 1 4 4 C 1.86296 * 109.47468 * 239.99494 * 2 1 3 5 5 O 1.63100 * 109.46959 * 119.99370 * 2 1 3 6 6 C 1.42895 * 113.99934 * 60.00290 * 5 2 1 7 7 C 1.50708 * 109.47163 * 89.99868 * 6 5 2 8 8 N 1.27947 * 119.99709 * 250.00214 * 7 6 5 9 9 Si 1.86800 * 119.99941 * 70.00322 * 7 6 5 10 10 H 1.48498 * 109.46689 * 180.02562 * 9 7 6 11 11 H 1.48505 * 109.46653 * 299.99648 * 9 7 6 12 12 H 1.48492 * 109.47121 * 60.00015 * 9 7 6 13 13 C 1.52995 * 109.47352 * 209.99715 * 6 5 2 14 14 H 1.09001 * 109.52547 * 300.12605 * 13 6 5 15 15 C 1.53180 * 109.52365 * 60.31440 * 13 6 5 16 16 C 1.53175 * 109.04211 * 176.88615 * 15 13 6 17 17 C 1.53087 * 109.16261 * 303.02272 * 16 15 13 18 18 O 1.42901 * 109.41772 * 57.60257 * 17 16 15 19 19 C 1.42905 * 114.09994 * 298.84352 * 18 17 16 20 20 H 1.08994 * 109.47155 * 300.00690 * 1 2 3 21 21 H 1.09000 * 109.46616 * 60.00600 * 1 2 3 22 22 H 1.08996 * 109.46887 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47433 * 180.02562 * 3 2 1 24 24 H 1.09007 * 109.46637 * 299.99556 * 3 2 1 25 25 H 1.08994 * 109.47652 * 59.99614 * 3 2 1 26 26 H 1.08997 * 109.47029 * 300.00439 * 4 2 1 27 27 H 1.09005 * 109.46635 * 60.00023 * 4 2 1 28 28 H 1.09003 * 109.47460 * 179.97438 * 4 2 1 29 29 H 1.09005 * 109.47232 * 329.99724 * 6 5 2 30 30 H 0.97001 * 119.99976 * 359.97438 * 8 7 6 31 31 H 1.09002 * 109.54397 * 296.75761 * 15 13 6 32 32 H 1.09000 * 109.54097 * 57.01763 * 15 13 6 33 33 H 1.08993 * 109.52464 * 183.11032 * 16 15 13 34 34 H 1.09006 * 109.57126 * 62.95381 * 16 15 13 35 35 H 1.09003 * 109.48067 * 297.62371 * 17 16 15 36 36 H 1.08996 * 109.48410 * 177.59095 * 17 16 15 37 37 H 1.08992 * 109.47896 * 301.17138 * 19 18 17 38 38 H 1.09000 * 109.48083 * 181.13693 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8783 -1.5210 5 8 2.4066 -0.7687 1.3318 6 6 1.9850 -2.1305 1.4296 7 6 2.9970 -3.0195 0.7536 8 7 2.7012 -3.6055 -0.3447 9 14 4.6829 -3.2659 1.5193 10 1 5.4858 -4.1777 0.6653 11 1 5.3730 -1.9555 1.6289 12 1 4.5304 -3.8598 2.8717 13 6 1.8656 -2.5229 2.9036 14 1 2.8330 -2.4047 3.3916 15 6 0.8315 -1.6252 3.5901 16 6 0.6637 -2.0775 5.0439 17 6 0.2585 -3.5536 5.0674 18 8 1.2471 -4.3285 4.3860 19 6 1.4138 -3.9818 3.0097 20 1 -0.3633 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3633 -1.0276 0.0005 23 1 3.5741 1.7566 -0.0005 24 1 2.1207 2.2703 -0.8901 25 1 2.1207 2.2704 0.8899 26 1 2.1207 -1.9059 -1.5209 27 1 2.1207 -0.3645 -2.4110 28 1 3.5741 -0.8779 -1.5212 29 1 1.0166 -2.2469 0.9430 30 1 1.8256 -3.4778 -0.7420 31 1 1.1742 -0.5907 3.5673 32 1 -0.1234 -1.7058 3.0706 33 1 -0.1105 -1.4795 5.5244 34 1 1.6059 -1.9499 5.5770 35 1 -0.7040 -3.6742 4.5702 36 1 0.1793 -3.8924 6.1003 37 1 0.4665 -4.1081 2.4858 38 1 2.1670 -4.6291 2.5604 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203526468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:36 Heat of formation + Delta-G solvation = -116.998659 kcal Electronic energy + Delta-G solvation = -17437.409429 eV Core-core repulsion = 14823.916634 eV Total energy + Delta-G solvation = -2613.492795 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.136 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.92564 -38.90601 -35.89049 -34.60905 -32.64180 -29.68688 -28.69682 -28.51109 -27.47787 -25.94487 -23.84620 -21.90277 -21.24292 -18.41315 -17.55806 -17.40541 -16.82687 -16.07370 -15.83819 -15.61047 -14.75821 -14.62648 -14.41240 -14.18730 -13.98857 -13.81143 -13.61623 -13.42661 -13.36707 -13.23818 -13.05132 -12.78896 -12.75443 -12.38798 -12.18457 -12.01247 -11.83929 -11.67966 -11.45211 -11.22734 -10.83673 -10.73613 -10.47825 -9.99659 0.60358 1.19469 1.35322 1.68162 1.72300 1.86287 1.88559 2.00143 2.31451 2.85555 3.41275 3.56690 3.70096 3.81212 3.94521 4.04084 4.14354 4.25682 4.41666 4.48628 4.52667 4.58302 4.58906 4.63018 4.63890 4.66946 4.67394 4.71464 4.82311 4.86740 5.00423 5.10805 5.21852 5.28533 5.36138 5.45790 5.49856 6.16637 6.69043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.509 4.509 2 Si 1.248 2.752 3 C -0.464 4.464 4 C -0.514 4.514 5 O -0.606 6.606 6 C 0.104 3.896 7 C -0.057 4.057 8 N -0.605 5.605 9 Si 1.050 2.950 10 H -0.247 1.247 11 H -0.238 1.238 12 H -0.238 1.238 13 C -0.126 4.126 14 H 0.099 0.901 15 C -0.115 4.115 16 C -0.158 4.158 17 C 0.056 3.944 18 O -0.374 6.374 19 C 0.062 3.938 20 H 0.073 0.927 21 H 0.075 0.925 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.324 0.676 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.096 0.904 37 H 0.052 0.948 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.580 1.657 0.907 2.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.611 4.611 2 Si 1.385 2.615 3 C -0.571 4.571 4 C -0.616 4.616 5 O -0.563 6.563 6 C 0.045 3.955 7 C -0.303 4.303 8 N -0.220 5.220 9 Si 0.863 3.137 10 H -0.170 1.170 11 H -0.161 1.161 12 H -0.161 1.161 13 C -0.145 4.145 14 H 0.117 0.883 15 C -0.152 4.152 16 C -0.195 4.195 17 C -0.021 4.021 18 O -0.293 6.293 19 C -0.015 4.015 20 H 0.092 0.908 21 H 0.094 0.906 22 H 0.083 0.917 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.143 0.857 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.114 0.886 37 H 0.071 0.929 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.070 0.748 0.922 1.189 hybrid contribution -2.125 1.097 -0.817 2.527 sum -2.195 1.845 0.104 2.869 Atomic orbital electron populations 1.26982 1.24920 1.04193 1.04961 0.77347 0.63533 0.65073 0.55517 1.26264 1.07048 1.18896 1.04874 1.27254 1.07355 1.08504 1.18512 1.85418 1.79015 1.25614 1.66275 1.21818 0.95412 0.81143 0.97175 1.32388 1.09820 0.93080 0.95010 1.69563 1.24765 1.19320 1.08359 0.83782 0.69557 0.81786 0.78612 1.17026 1.16086 1.16122 1.21985 1.02192 0.96252 0.94066 0.88259 1.21580 0.98194 1.00389 0.95076 1.22216 1.03141 0.96890 0.97299 1.22663 0.90854 0.90757 0.97837 1.87994 1.59584 1.59272 1.22408 1.22593 1.00977 0.94209 0.83727 0.90765 0.90634 0.91748 0.90587 0.90480 0.90667 0.91542 0.90750 0.90639 0.91603 0.85669 0.89903 0.91902 0.90536 0.90594 0.93126 0.88564 0.92928 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 0.75 8.56 101.05 0.87 1.62 16 2 Si 1.25 -2.16 12.68 -169.99 -2.16 -4.32 16 3 C -0.46 0.51 8.65 101.05 0.87 1.39 16 4 C -0.51 0.27 7.98 101.05 0.81 1.07 16 5 O -0.61 0.31 7.47 -35.23 -0.26 0.05 16 6 C 0.10 -0.08 1.40 -27.88 -0.04 -0.12 16 7 C -0.06 0.00 3.12 -13.89 -0.04 -0.05 16 8 N -0.60 -0.39 11.99 56.23 0.67 0.29 16 9 Si 1.05 0.29 26.94 -169.99 -4.58 -4.29 16 10 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 11 H -0.24 -0.08 7.11 56.52 0.40 0.33 16 12 H -0.24 0.05 7.06 56.52 0.40 0.44 16 13 C -0.13 0.06 1.70 -90.48 -0.15 -0.09 16 14 H 0.10 -0.03 6.48 -51.93 -0.34 -0.36 16 15 C -0.11 0.13 5.12 -26.55 -0.14 -0.01 16 16 C -0.16 0.19 6.14 -26.60 -0.16 0.03 16 17 C 0.06 -0.03 6.84 37.20 0.25 0.23 16 18 O -0.37 -0.68 10.77 -35.23 -0.38 -1.06 16 19 C 0.06 0.00 5.78 37.21 0.22 0.21 16 20 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 21 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 22 H 0.06 -0.11 7.10 -51.93 -0.37 -0.48 16 23 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 24 H 0.08 -0.12 7.96 -51.92 -0.41 -0.54 16 25 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 26 H 0.07 -0.03 4.71 -51.93 -0.24 -0.27 16 27 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 28 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 29 H 0.07 -0.15 5.88 -51.93 -0.31 -0.45 16 30 H 0.32 -0.26 7.11 -40.82 -0.29 -0.55 16 31 H 0.08 -0.10 7.80 -51.93 -0.41 -0.50 16 32 H 0.06 -0.10 8.14 -51.93 -0.42 -0.53 16 33 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 34 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 35 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 36 H 0.10 -0.13 8.14 -51.93 -0.42 -0.55 16 37 H 0.05 -0.05 8.14 -51.93 -0.42 -0.48 16 38 H 0.10 -0.04 6.57 -51.93 -0.34 -0.38 16 LS Contribution 296.67 15.07 4.47 4.47 Total: 0.00 -3.00 296.67 -6.27 -9.27 By element: Atomic # 1 Polarization: -2.18 SS G_CDS: -6.52 Total: -8.70 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 2.48 Total: 4.29 kcal Atomic # 7 Polarization: -0.39 SS G_CDS: 0.67 Total: 0.29 kcal Atomic # 8 Polarization: -0.37 SS G_CDS: -0.64 Total: -1.01 kcal Atomic # 14 Polarization: -1.88 SS G_CDS: -6.74 Total: -8.61 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -3.00 -6.27 -9.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203526468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.727 kcal (2) G-P(sol) polarization free energy of solvation -2.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds