Wall clock time and date at job start Mon Mar 30 2020 06:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.47157 * 2 1 4 4 C 1.86296 * 109.47468 * 239.99494 * 2 1 3 5 5 O 1.63100 * 109.46959 * 119.99370 * 2 1 3 6 6 C 1.42895 * 113.99934 * 60.00290 * 5 2 1 7 7 C 1.50708 * 109.47163 * 89.99868 * 6 5 2 8 8 N 1.27947 * 119.99709 * 250.00214 * 7 6 5 9 9 Si 1.86800 * 119.99941 * 70.00322 * 7 6 5 10 10 H 1.48498 * 109.46689 * 180.02562 * 9 7 6 11 11 H 1.48505 * 109.46653 * 299.99648 * 9 7 6 12 12 H 1.48492 * 109.47121 * 60.00015 * 9 7 6 13 13 C 1.52995 * 109.47352 * 209.99715 * 6 5 2 14 14 H 1.09001 * 109.52547 * 300.12605 * 13 6 5 15 15 C 1.53180 * 109.52365 * 60.31440 * 13 6 5 16 16 C 1.53175 * 109.04211 * 176.88615 * 15 13 6 17 17 C 1.53087 * 109.16261 * 303.02272 * 16 15 13 18 18 O 1.42901 * 109.41772 * 57.60257 * 17 16 15 19 19 C 1.42905 * 114.09994 * 298.84352 * 18 17 16 20 20 H 1.08994 * 109.47155 * 300.00690 * 1 2 3 21 21 H 1.09000 * 109.46616 * 60.00600 * 1 2 3 22 22 H 1.08996 * 109.46887 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47433 * 180.02562 * 3 2 1 24 24 H 1.09007 * 109.46637 * 299.99556 * 3 2 1 25 25 H 1.08994 * 109.47652 * 59.99614 * 3 2 1 26 26 H 1.08997 * 109.47029 * 300.00439 * 4 2 1 27 27 H 1.09005 * 109.46635 * 60.00023 * 4 2 1 28 28 H 1.09003 * 109.47460 * 179.97438 * 4 2 1 29 29 H 1.09005 * 109.47232 * 329.99724 * 6 5 2 30 30 H 0.97001 * 119.99976 * 359.97438 * 8 7 6 31 31 H 1.09002 * 109.54397 * 296.75761 * 15 13 6 32 32 H 1.09000 * 109.54097 * 57.01763 * 15 13 6 33 33 H 1.08993 * 109.52464 * 183.11032 * 16 15 13 34 34 H 1.09006 * 109.57126 * 62.95381 * 16 15 13 35 35 H 1.09003 * 109.48067 * 297.62371 * 17 16 15 36 36 H 1.08996 * 109.48410 * 177.59095 * 17 16 15 37 37 H 1.08992 * 109.47896 * 301.17138 * 19 18 17 38 38 H 1.09000 * 109.48083 * 181.13693 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8783 -1.5210 5 8 2.4066 -0.7687 1.3318 6 6 1.9850 -2.1305 1.4296 7 6 2.9970 -3.0195 0.7536 8 7 2.7012 -3.6055 -0.3447 9 14 4.6829 -3.2659 1.5193 10 1 5.4858 -4.1777 0.6653 11 1 5.3730 -1.9555 1.6289 12 1 4.5304 -3.8598 2.8717 13 6 1.8656 -2.5229 2.9036 14 1 2.8330 -2.4047 3.3916 15 6 0.8315 -1.6252 3.5901 16 6 0.6637 -2.0775 5.0439 17 6 0.2585 -3.5536 5.0674 18 8 1.2471 -4.3285 4.3860 19 6 1.4138 -3.9818 3.0097 20 1 -0.3633 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3633 -1.0276 0.0005 23 1 3.5741 1.7566 -0.0005 24 1 2.1207 2.2703 -0.8901 25 1 2.1207 2.2704 0.8899 26 1 2.1207 -1.9059 -1.5209 27 1 2.1207 -0.3645 -2.4110 28 1 3.5741 -0.8779 -1.5212 29 1 1.0166 -2.2469 0.9430 30 1 1.8256 -3.4778 -0.7420 31 1 1.1742 -0.5907 3.5673 32 1 -0.1234 -1.7058 3.0706 33 1 -0.1105 -1.4795 5.5244 34 1 1.6059 -1.9499 5.5770 35 1 -0.7040 -3.6742 4.5702 36 1 0.1793 -3.8924 6.1003 37 1 0.4665 -4.1081 2.4858 38 1 2.1670 -4.6291 2.5604 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203526469.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:39 Heat of formation + Delta-G solvation = -107.876939 kcal Electronic energy + Delta-G solvation = -17437.013882 eV Core-core repulsion = 14823.916634 eV Total energy + Delta-G solvation = -2613.097248 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.87292 -38.87200 -35.87730 -34.55886 -32.56605 -29.57920 -28.57209 -28.42937 -27.41413 -25.88501 -23.79121 -21.87890 -21.15865 -18.34226 -17.52908 -17.35759 -16.78896 -16.00279 -15.86992 -15.54662 -14.66990 -14.56068 -14.31002 -14.11549 -13.90209 -13.75692 -13.53678 -13.31344 -13.27218 -13.15028 -12.98904 -12.74971 -12.72340 -12.31749 -12.13818 -11.97839 -11.80908 -11.62060 -11.42022 -11.16176 -10.73884 -10.65706 -10.43877 -9.96668 0.61424 1.17614 1.44348 1.63086 1.83222 1.85524 1.94420 2.03200 2.41409 2.91682 3.47514 3.65831 3.79216 3.88707 4.05007 4.13538 4.23728 4.33761 4.51110 4.53601 4.65882 4.68452 4.70218 4.72646 4.73677 4.75807 4.76409 4.78720 4.92112 4.95926 5.11947 5.20986 5.32802 5.39091 5.47697 5.54500 5.59807 6.21754 6.73532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.513 4.513 2 Si 1.284 2.716 3 C -0.476 4.476 4 C -0.526 4.526 5 O -0.615 6.615 6 C 0.103 3.897 7 C -0.055 4.055 8 N -0.619 5.619 9 Si 1.054 2.946 10 H -0.265 1.265 11 H -0.239 1.239 12 H -0.232 1.232 13 C -0.126 4.126 14 H 0.093 0.907 15 C -0.115 4.115 16 C -0.156 4.156 17 C 0.050 3.950 18 O -0.398 6.398 19 C 0.058 3.942 20 H 0.075 0.925 21 H 0.076 0.924 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.332 0.668 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.477 2.047 1.014 3.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.615 4.615 2 Si 1.419 2.581 3 C -0.582 4.582 4 C -0.627 4.627 5 O -0.572 6.572 6 C 0.043 3.957 7 C -0.300 4.300 8 N -0.235 5.235 9 Si 0.868 3.132 10 H -0.190 1.190 11 H -0.162 1.162 12 H -0.155 1.155 13 C -0.146 4.146 14 H 0.111 0.889 15 C -0.153 4.153 16 C -0.193 4.193 17 C -0.026 4.026 18 O -0.317 6.317 19 C -0.019 4.019 20 H 0.094 0.906 21 H 0.095 0.905 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.100 0.900 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.152 0.848 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.961 1.144 1.027 1.813 hybrid contribution -1.817 0.965 -0.865 2.232 sum -2.778 2.110 0.162 3.492 Atomic orbital electron populations 1.27005 1.24766 1.04556 1.05133 0.76732 0.63170 0.63961 0.54246 1.26394 1.06841 1.19765 1.05180 1.27420 1.06801 1.08789 1.19658 1.85412 1.79339 1.25687 1.66755 1.21849 0.95857 0.80855 0.97102 1.32292 1.09793 0.93095 0.94869 1.69543 1.25499 1.19791 1.08711 0.83707 0.69685 0.81256 0.78584 1.18959 1.16209 1.15513 1.21973 1.02186 0.96166 0.94226 0.88862 1.21602 0.98375 1.00210 0.95099 1.22201 1.03177 0.96603 0.97355 1.22806 0.90766 0.91002 0.98070 1.87955 1.60360 1.60126 1.23303 1.22683 1.01570 0.94488 0.83187 0.90597 0.90489 0.91306 0.91068 0.90005 0.90573 0.91651 0.90496 0.91598 0.89848 0.84819 0.89789 0.91019 0.89325 0.91312 0.92338 0.88089 0.91860 0.88688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 2.08 8.56 113.37 0.97 3.05 16 2 Si 1.28 -4.95 12.68 68.60 0.87 -4.08 16 3 C -0.48 1.11 8.65 113.37 0.98 2.09 16 4 C -0.53 0.48 7.98 113.37 0.90 1.39 16 5 O -0.61 0.86 7.47 -148.98 -1.11 -0.25 16 6 C 0.10 -0.20 1.40 29.85 0.04 -0.16 16 7 C -0.05 -0.02 3.12 88.68 0.28 0.26 16 8 N -0.62 -0.91 11.99 24.11 0.29 -0.62 16 9 Si 1.05 1.45 26.94 68.60 1.85 3.30 16 10 H -0.27 -1.13 7.11 99.48 0.71 -0.42 16 11 H -0.24 -0.34 7.11 99.48 0.71 0.37 16 12 H -0.23 -0.07 7.06 99.48 0.70 0.63 16 13 C -0.13 0.16 1.70 -10.70 -0.02 0.14 16 14 H 0.09 -0.02 6.48 -2.39 -0.02 -0.04 16 15 C -0.12 0.35 5.12 30.71 0.16 0.50 16 16 C -0.16 0.46 6.14 30.68 0.19 0.64 16 17 C 0.05 -0.06 6.84 72.01 0.49 0.43 16 18 O -0.40 -1.50 10.77 -148.98 -1.60 -3.10 16 19 C 0.06 -0.01 5.78 72.01 0.42 0.41 16 20 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 21 H 0.08 -0.31 7.96 -2.39 -0.02 -0.33 16 22 H 0.07 -0.33 7.10 -2.39 -0.02 -0.34 16 23 H 0.07 -0.10 7.96 -2.39 -0.02 -0.11 16 24 H 0.08 -0.28 7.96 -2.38 -0.02 -0.30 16 25 H 0.08 -0.19 7.96 -2.39 -0.02 -0.21 16 26 H 0.06 -0.05 4.71 -2.39 -0.01 -0.06 16 27 H 0.08 -0.13 7.96 -2.38 -0.02 -0.15 16 28 H 0.06 0.07 7.96 -2.39 -0.02 0.05 16 29 H 0.08 -0.46 5.88 -2.38 -0.01 -0.48 16 30 H 0.33 -0.58 7.11 -92.71 -0.66 -1.24 16 31 H 0.08 -0.26 7.80 -2.39 -0.02 -0.28 16 32 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 33 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 34 H 0.07 -0.10 8.14 -2.38 -0.02 -0.12 16 35 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 36 H 0.10 -0.28 8.14 -2.39 -0.02 -0.30 16 37 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.10 -0.05 6.57 -2.39 -0.02 -0.06 16 Total: 0.00 -6.79 296.67 5.82 -0.97 By element: Atomic # 1 Polarization: -6.08 SS G_CDS: 1.11 Total: -4.96 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 4.41 Total: 8.76 kcal Atomic # 7 Polarization: -0.91 SS G_CDS: 0.29 Total: -0.62 kcal Atomic # 8 Polarization: -0.64 SS G_CDS: -2.72 Total: -3.36 kcal Atomic # 14 Polarization: -3.51 SS G_CDS: 2.72 Total: -0.79 kcal Total: -6.79 5.82 -0.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203526469.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.908 kcal (2) G-P(sol) polarization free energy of solvation -6.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -0.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds