Wall clock time and date at job start Mon Mar 30 2020 05:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47207 * 2 1 4 4 C 1.53004 * 109.46860 * 239.99766 * 2 1 3 5 5 C 1.53002 * 109.47175 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.46573 * 60.00432 * 5 4 2 7 7 C 1.53001 * 109.47189 * 299.99996 * 6 5 4 8 8 H 1.09007 * 109.47028 * 300.00258 * 7 6 5 9 9 S 1.81398 * 109.47251 * 180.02562 * 7 6 5 10 10 O 1.42105 * 109.46896 * 298.61094 * 9 7 6 11 11 C 1.81395 * 103.00371 * 54.99789 * 9 7 6 12 12 C 1.52998 * 109.47564 * 180.02562 * 11 9 7 13 13 C 1.50699 * 109.47269 * 180.02562 * 12 11 9 14 14 H 1.08004 * 120.00159 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99870 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99969 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99845 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46897 * 90.00329 * 17 15 13 19 19 H 1.48496 * 109.47317 * 210.00340 * 17 15 13 20 20 H 1.48505 * 109.47308 * 330.00414 * 17 15 13 21 21 C 1.52999 * 109.47528 * 60.00161 * 7 6 5 22 22 H 1.08997 * 109.47207 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46658 * 300.00280 * 1 2 3 24 24 H 1.09004 * 109.47166 * 59.99873 * 1 2 3 25 25 H 1.09004 * 109.46937 * 60.00221 * 4 2 1 26 26 H 1.08997 * 109.47402 * 300.00115 * 4 2 1 27 27 H 1.08997 * 109.47289 * 300.00987 * 5 4 2 28 28 H 1.08991 * 109.47445 * 180.02562 * 5 4 2 29 29 H 1.08998 * 109.47065 * 179.97438 * 6 5 4 30 30 H 1.08997 * 109.47346 * 60.00080 * 6 5 4 31 31 H 1.09007 * 109.47190 * 300.00700 * 11 9 7 32 32 H 1.08998 * 109.47371 * 59.99867 * 11 9 7 33 33 H 1.09002 * 109.46636 * 299.99912 * 12 11 9 34 34 H 1.08999 * 109.47398 * 59.99899 * 12 11 9 35 35 H 0.96998 * 119.99666 * 180.02562 * 16 15 13 36 36 H 1.08997 * 109.46940 * 59.99447 * 21 7 6 37 37 H 1.08991 * 109.47614 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5700 -0.7208 -1.2497 6 6 4.0804 -1.4418 -0.0004 7 6 3.5705 -0.7205 1.2488 8 1 3.9335 0.3073 1.2486 9 16 4.1762 -1.5749 2.7300 10 8 3.6771 -2.9052 2.7468 11 6 5.9722 -1.6062 2.4772 12 6 6.6418 -2.3070 3.6610 13 6 8.1339 -2.3324 3.4513 14 1 8.5619 -1.8930 2.5623 15 6 8.9527 -2.9166 4.3943 16 7 8.4316 -3.4521 5.4765 17 14 10.8022 -2.9488 4.1340 18 1 11.4068 -1.7287 4.7268 19 1 11.3735 -4.1527 4.7891 20 1 11.0967 -2.9903 2.6790 21 6 2.0405 -0.7210 1.2492 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.6766 -0.2075 -2.1393 26 1 1.6766 -1.7490 -1.2493 27 1 3.9330 0.3069 -1.2498 28 1 3.9333 -1.2342 -2.1398 29 1 5.1704 -1.4418 -0.0009 30 1 3.7174 -2.4695 -0.0002 31 1 6.2005 -2.1470 1.5587 32 1 6.3462 -0.5852 2.4001 33 1 6.4135 -1.7665 4.5796 34 1 6.2679 -3.3280 3.7377 35 1 9.0077 -3.8627 6.1401 36 1 1.6775 -1.7487 1.2493 37 1 1.6772 -0.2068 2.1389 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203528671.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:06 Heat of formation + Delta-G solvation = -80.777280 kcal Electronic energy + Delta-G solvation = -15875.399176 eV Core-core repulsion = 13356.679220 eV Total energy + Delta-G solvation = -2518.719956 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.63073 -35.01394 -33.67053 -32.70805 -30.85414 -30.79741 -26.57659 -25.21704 -22.88553 -21.45513 -21.01325 -19.77274 -16.97183 -16.47741 -15.51271 -14.77568 -14.70125 -14.45842 -14.38442 -14.14291 -13.57633 -13.38410 -12.74803 -12.46378 -12.31622 -11.94964 -11.89475 -11.60482 -11.32602 -11.07340 -11.02335 -10.90009 -10.77594 -10.66295 -10.47601 -10.16406 -10.07422 -9.87987 -9.39285 -8.82953 -8.39602 -7.56383 -6.02678 -4.06664 2.11063 3.26135 3.30132 3.36680 3.39960 4.34462 4.44608 4.61556 4.65053 4.80434 5.07638 5.12740 5.30940 5.32308 5.41215 5.46700 5.55876 5.62343 5.63541 5.73354 5.88770 5.94019 5.99554 6.09099 6.15104 6.16853 6.20378 6.21454 6.24812 6.44294 6.86823 7.52760 7.64844 7.92782 8.34625 8.98173 9.57318 11.07985 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.048157 B = 0.004809 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.289705 B = 5820.859186 C = 6201.052120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 H 0.071 0.929 4 C -0.114 4.114 5 C -0.114 4.114 6 C -0.115 4.115 7 C -0.415 4.415 8 H 0.116 0.884 9 S 1.213 4.787 10 O -0.852 6.852 11 C -0.413 4.413 12 C 0.038 3.962 13 C -0.518 4.518 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.895 3.105 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.089 4.089 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.027 0.973 34 H 0.022 0.978 35 H 0.262 0.738 36 H 0.065 0.935 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.070 10.520 -9.404 19.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 H 0.089 0.911 4 C -0.151 4.151 5 C -0.152 4.152 6 C -0.153 4.153 7 C -0.530 4.530 8 H 0.134 0.866 9 S 1.415 4.585 10 O -0.847 6.847 11 C -0.552 4.552 12 C 0.000 4.000 13 C -0.558 4.558 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.532 5.532 17 Si 0.722 3.278 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.127 4.127 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.121 0.879 33 H 0.046 0.954 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.595 10.041 -8.482 18.910 hybrid contribution 1.756 -1.133 -2.041 2.921 sum -11.839 8.908 -10.524 18.173 Atomic orbital electron populations 1.21847 0.95455 1.01781 1.01481 1.21104 0.94990 0.99579 0.94963 0.91094 1.21588 0.95686 1.00576 0.97298 1.21491 0.95554 1.00618 0.97550 1.21598 1.00559 0.99231 0.93883 1.27693 1.02358 1.09655 1.13307 0.86585 1.70079 0.88481 0.99294 1.00638 1.93082 1.74847 1.36694 1.80092 1.27589 1.14282 1.06567 1.06788 1.18781 0.95425 0.95435 0.90363 1.21161 0.91248 1.37643 1.05709 0.92544 1.25041 0.98920 0.95276 0.95218 1.69961 1.35332 1.38158 1.09734 0.86556 0.85348 0.77591 0.78282 1.20491 1.21154 1.19955 1.21233 0.92265 1.01272 0.97928 0.92792 0.92543 0.92923 0.92370 0.92240 0.91934 0.92404 0.91357 0.91862 0.90776 0.87888 0.95440 0.95949 0.92811 0.91622 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.19 37.16 0.34 -0.95 16 2 C -0.09 -0.87 2.72 -90.62 -0.25 -1.11 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 4 C -0.11 -1.20 5.20 -26.73 -0.14 -1.34 16 5 C -0.11 -1.30 5.92 -26.73 -0.16 -1.46 16 6 C -0.11 -1.60 4.95 -26.73 -0.13 -1.74 16 7 C -0.41 -5.26 2.71 -26.73 -0.07 -5.33 16 8 H 0.12 1.18 8.14 -51.92 -0.42 0.76 16 9 S 1.21 19.64 12.67 -107.50 -1.36 18.27 16 10 O -0.85 -19.20 18.13 -35.23 -0.64 -19.84 16 11 C -0.41 -8.14 5.26 37.16 0.20 -7.94 16 12 C 0.04 1.00 4.98 -27.88 -0.14 0.86 16 13 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 14 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 17 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.09 -1.03 4.48 -26.73 -0.12 -1.15 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.99 6.51 -51.93 -0.34 0.65 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.53 6.90 -51.92 -0.36 1.17 16 32 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 306.53 15.07 4.62 4.62 Total: -1.00 -34.73 306.53 -9.13 -43.85 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -6.58 Total: -3.66 kcal Atomic # 6 Polarization: -32.76 SS G_CDS: -0.88 Total: -33.64 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.74 Total: -26.25 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.64 Total: -19.84 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 19.64 SS G_CDS: -1.36 Total: 18.27 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.73 -9.13 -43.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203528671.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.926 kcal (2) G-P(sol) polarization free energy of solvation -34.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds