Wall clock time and date at job start Mon Mar 30 2020 05:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.52996 * 109.47473 * 120.00038 * 2 1 3 5 5 C 1.53000 * 109.47328 * 60.00001 * 4 2 1 6 6 C 1.52997 * 109.47060 * 60.00126 * 5 4 2 7 7 C 1.53006 * 109.47127 * 300.00449 * 6 5 4 8 8 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 9 9 S 1.81404 * 109.47098 * 179.97438 * 7 6 5 10 10 O 1.42092 * 109.47119 * 298.61031 * 9 7 6 11 11 C 1.81401 * 102.99859 * 54.99979 * 9 7 6 12 12 C 1.53007 * 109.47000 * 180.02562 * 11 9 7 13 13 C 1.50695 * 109.46789 * 180.02562 * 12 11 9 14 14 H 1.07999 * 120.00468 * 359.97438 * 13 12 11 15 15 C 1.37887 * 119.99626 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99633 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99947 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46945 * 60.00067 * 17 15 13 19 19 H 1.48493 * 109.46975 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47029 * 300.00293 * 17 15 13 21 21 C 1.52997 * 109.47164 * 59.99836 * 7 6 5 22 22 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 23 23 H 1.09002 * 109.47722 * 60.00050 * 1 2 3 24 24 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47368 * 300.00213 * 4 2 1 26 26 H 1.09001 * 109.47372 * 180.02562 * 4 2 1 27 27 H 1.09002 * 109.47398 * 180.02562 * 5 4 2 28 28 H 1.09001 * 109.47194 * 300.00476 * 5 4 2 29 29 H 1.08998 * 109.47533 * 59.99948 * 6 5 4 30 30 H 1.08996 * 109.47853 * 180.02562 * 6 5 4 31 31 H 1.09005 * 109.47272 * 299.99668 * 11 9 7 32 32 H 1.08996 * 109.47412 * 59.99774 * 11 9 7 33 33 H 1.09005 * 109.46651 * 299.99821 * 12 11 9 34 34 H 1.08996 * 109.47408 * 59.99544 * 12 11 9 35 35 H 0.97009 * 119.99491 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.47045 * 180.02562 * 21 7 6 37 37 H 1.09001 * 109.47375 * 59.99966 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5301 -2.1637 1.2492 6 6 2.0401 -2.8850 0.0000 7 6 1.5300 -2.1637 -1.2493 8 1 0.4400 -2.1638 -1.2493 9 16 2.1353 -3.0184 -2.7304 10 8 3.5559 -2.9898 -2.7465 11 6 1.5676 -4.7228 -2.4786 12 6 2.0068 -5.5868 -3.6626 13 6 1.5346 -7.0025 -3.4537 14 1 0.9775 -7.2604 -2.5652 15 6 1.8140 -7.9687 -4.3969 16 7 2.4929 -7.6547 -5.4786 17 14 1.2293 -9.7238 -4.1377 18 1 -0.2519 -9.7418 -4.0335 19 1 1.6555 -10.5622 -5.2868 20 1 1.8202 -10.2626 -2.8863 21 6 2.0400 -0.7212 -1.2493 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6767 -0.2074 2.1392 26 1 3.1300 -0.7208 1.2494 27 1 1.8931 -2.6775 2.1394 28 1 0.4401 -2.1638 1.2492 29 1 3.1300 -2.8850 -0.0001 30 1 1.6765 -3.9125 -0.0003 31 1 2.0013 -5.1183 -1.5601 32 1 0.4804 -4.7361 -2.4021 33 1 1.5734 -5.1914 -4.5813 34 1 3.0940 -5.5734 -3.7387 35 1 2.6897 -8.3345 -6.1421 36 1 1.6763 -0.2073 -2.1390 37 1 3.1300 -0.7212 -1.2492 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203528686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:08 Heat of formation + Delta-G solvation = -76.334676 kcal Electronic energy + Delta-G solvation = -16027.800296 eV Core-core repulsion = 13509.272986 eV Total energy + Delta-G solvation = -2518.527310 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.94296 -35.01229 -33.66039 -32.09573 -30.85000 -30.78426 -26.89370 -25.26187 -22.83547 -22.21578 -20.99673 -18.62048 -17.10263 -16.60798 -15.79883 -14.90665 -14.60151 -14.53100 -14.11654 -13.96480 -13.57878 -13.42491 -12.95494 -12.50089 -12.27920 -11.94281 -11.74395 -11.67127 -11.26377 -11.11124 -11.01294 -10.94546 -10.76800 -10.67670 -10.24711 -10.11421 -10.03803 -9.87348 -9.39983 -8.83030 -8.39130 -7.55739 -6.02341 -4.06383 2.11988 3.26769 3.31660 3.36464 3.38679 4.35164 4.44846 4.62528 4.65476 4.82671 5.12233 5.19931 5.28166 5.32141 5.32677 5.47702 5.60440 5.61705 5.73883 5.76134 5.90242 5.96963 5.98806 6.08660 6.13667 6.17017 6.20988 6.26313 6.28706 6.46440 6.87087 7.52861 7.65106 7.92930 8.34869 8.98192 9.57472 11.08263 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.042692 B = 0.005031 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.701765 B = 5563.991039 C = 5859.088562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 H 0.067 0.933 4 C -0.114 4.114 5 C -0.115 4.115 6 C -0.114 4.114 7 C -0.415 4.415 8 H 0.118 0.882 9 S 1.212 4.788 10 O -0.852 6.852 11 C -0.412 4.412 12 C 0.039 3.961 13 C -0.519 4.519 14 H 0.056 0.944 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.895 3.105 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.278 1.278 21 C -0.089 4.089 22 H 0.049 0.951 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.027 0.973 34 H 0.022 0.978 35 H 0.263 0.737 36 H 0.070 0.930 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.277 15.326 9.392 19.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 H 0.085 0.915 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.152 4.152 7 C -0.531 4.531 8 H 0.136 0.864 9 S 1.414 4.586 10 O -0.848 6.848 11 C -0.552 4.552 12 C 0.000 4.000 13 C -0.558 4.558 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.722 3.278 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.127 4.127 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.121 0.879 33 H 0.045 0.955 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.654 15.662 8.464 18.678 hybrid contribution 0.513 -2.018 2.060 2.929 sum -5.142 13.643 10.523 17.981 Atomic orbital electron populations 1.21938 0.95269 1.02288 1.01251 1.21048 0.96002 0.98591 0.94963 0.91487 1.21551 1.00468 0.95835 0.97320 1.21525 1.00884 0.95463 0.97487 1.21586 1.00913 0.98795 0.93879 1.27711 1.08212 1.03917 1.13231 0.86350 1.70067 0.94785 0.92994 1.00760 1.93080 1.26840 1.84687 1.80158 1.27587 1.07228 1.13613 1.06775 1.18775 0.97119 0.93701 0.90359 1.21122 1.35487 0.93497 1.05716 0.92607 1.25040 0.95153 0.99033 0.95197 1.69955 1.39387 1.34103 1.09745 0.86615 0.79132 0.84362 0.77645 1.20112 1.21167 1.20332 1.21204 1.00754 0.92798 0.97951 0.93232 0.92613 0.91773 0.92389 0.92304 0.92533 0.91592 0.91895 0.91397 0.90785 0.87910 0.95456 0.95972 0.92757 0.91113 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.50 37.15 0.32 -0.98 16 2 C -0.09 -0.86 3.19 -90.62 -0.29 -1.15 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.11 -1.20 5.45 -26.73 -0.15 -1.34 16 5 C -0.12 -1.31 5.65 -26.73 -0.15 -1.46 16 6 C -0.11 -1.58 4.95 -26.73 -0.13 -1.71 16 7 C -0.42 -5.24 2.44 -26.73 -0.07 -5.30 16 8 H 0.12 1.21 6.43 -51.92 -0.33 0.88 16 9 S 1.21 19.60 12.67 -107.50 -1.36 18.24 16 10 O -0.85 -19.22 18.12 -35.23 -0.64 -19.86 16 11 C -0.41 -8.13 5.26 37.16 0.20 -7.93 16 12 C 0.04 1.01 4.98 -27.88 -0.14 0.87 16 13 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 17 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C -0.09 -1.03 4.73 -26.73 -0.13 -1.16 16 22 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.57 4.81 -51.93 -0.25 0.32 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.68 6.43 -51.93 -0.33 0.35 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.98 6.51 -51.93 -0.34 0.64 16 31 H 0.07 1.53 6.90 -51.92 -0.36 1.17 16 32 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 299.49 15.07 4.51 4.51 Total: -1.00 -34.70 299.49 -8.95 -43.65 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -6.23 Total: -3.30 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: -0.95 Total: -33.63 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.74 Total: -26.26 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.64 Total: -19.86 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 19.60 SS G_CDS: -1.36 Total: 18.24 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.70 -8.95 -43.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203528686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.687 kcal (2) G-P(sol) polarization free energy of solvation -34.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds