Wall clock time and date at job start Mon Mar 30 2020 05:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.52996 * 109.47473 * 120.00038 * 2 1 3 5 5 C 1.53000 * 109.47328 * 60.00001 * 4 2 1 6 6 C 1.52997 * 109.47060 * 60.00126 * 5 4 2 7 7 C 1.53006 * 109.47127 * 300.00449 * 6 5 4 8 8 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 9 9 S 1.81404 * 109.47098 * 179.97438 * 7 6 5 10 10 O 1.42092 * 109.47119 * 298.61031 * 9 7 6 11 11 C 1.81401 * 102.99859 * 54.99979 * 9 7 6 12 12 C 1.53007 * 109.47000 * 180.02562 * 11 9 7 13 13 C 1.50695 * 109.46789 * 180.02562 * 12 11 9 14 14 H 1.07999 * 120.00468 * 359.97438 * 13 12 11 15 15 C 1.37887 * 119.99626 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99633 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99947 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46945 * 60.00067 * 17 15 13 19 19 H 1.48493 * 109.46975 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47029 * 300.00293 * 17 15 13 21 21 C 1.52997 * 109.47164 * 59.99836 * 7 6 5 22 22 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 23 23 H 1.09002 * 109.47722 * 60.00050 * 1 2 3 24 24 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47368 * 300.00213 * 4 2 1 26 26 H 1.09001 * 109.47372 * 180.02562 * 4 2 1 27 27 H 1.09002 * 109.47398 * 180.02562 * 5 4 2 28 28 H 1.09001 * 109.47194 * 300.00476 * 5 4 2 29 29 H 1.08998 * 109.47533 * 59.99948 * 6 5 4 30 30 H 1.08996 * 109.47853 * 180.02562 * 6 5 4 31 31 H 1.09005 * 109.47272 * 299.99668 * 11 9 7 32 32 H 1.08996 * 109.47412 * 59.99774 * 11 9 7 33 33 H 1.09005 * 109.46651 * 299.99821 * 12 11 9 34 34 H 1.08996 * 109.47408 * 59.99544 * 12 11 9 35 35 H 0.97009 * 119.99491 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.47045 * 180.02562 * 21 7 6 37 37 H 1.09001 * 109.47375 * 59.99966 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5301 -2.1637 1.2492 6 6 2.0401 -2.8850 0.0000 7 6 1.5300 -2.1637 -1.2493 8 1 0.4400 -2.1638 -1.2493 9 16 2.1353 -3.0184 -2.7304 10 8 3.5559 -2.9898 -2.7465 11 6 1.5676 -4.7228 -2.4786 12 6 2.0068 -5.5868 -3.6626 13 6 1.5346 -7.0025 -3.4537 14 1 0.9775 -7.2604 -2.5652 15 6 1.8140 -7.9687 -4.3969 16 7 2.4929 -7.6547 -5.4786 17 14 1.2293 -9.7238 -4.1377 18 1 -0.2519 -9.7418 -4.0335 19 1 1.6555 -10.5622 -5.2868 20 1 1.8202 -10.2626 -2.8863 21 6 2.0400 -0.7212 -1.2493 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6767 -0.2074 2.1392 26 1 3.1300 -0.7208 1.2494 27 1 1.8931 -2.6775 2.1394 28 1 0.4401 -2.1638 1.2492 29 1 3.1300 -2.8850 -0.0001 30 1 1.6765 -3.9125 -0.0003 31 1 2.0013 -5.1183 -1.5601 32 1 0.4804 -4.7361 -2.4021 33 1 1.5734 -5.1914 -4.5813 34 1 3.0940 -5.5734 -3.7387 35 1 2.6897 -8.3345 -6.1421 36 1 1.6763 -0.2073 -2.1390 37 1 3.1300 -0.7212 -1.2492 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203528686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:08 Heat of formation + Delta-G solvation = -99.371031 kcal Electronic energy + Delta-G solvation = -16028.799227 eV Core-core repulsion = 13509.272986 eV Total energy + Delta-G solvation = -2519.526241 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.86049 -36.65749 -35.73735 -33.19373 -32.66089 -31.78704 -27.77397 -27.18141 -24.01980 -23.22648 -22.75025 -19.51327 -18.76987 -18.35465 -17.04228 -16.51989 -16.04283 -15.79540 -15.48955 -15.28958 -14.74219 -14.61625 -14.20253 -13.99137 -13.53839 -13.41338 -13.23611 -12.84741 -12.67631 -12.55564 -12.50306 -12.12365 -11.95728 -11.94126 -11.84795 -11.59729 -11.45659 -11.14999 -10.94441 -10.59492 -10.40666 -9.01004 -8.21412 -6.34916 0.74514 1.39072 1.42472 1.50651 1.89945 2.39895 2.97919 3.10601 3.66468 3.69635 3.96548 4.20236 4.26037 4.30827 4.36964 4.43671 4.50028 4.57502 4.62705 4.82362 4.91733 4.98382 5.03509 5.06636 5.09368 5.15705 5.21131 5.34288 5.40486 5.42364 5.46477 5.51833 5.67140 5.76898 6.17633 6.79781 7.34447 8.89482 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.042692 B = 0.005031 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.701765 B = 5563.991039 C = 5859.088562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.083 4.083 3 H 0.079 0.921 4 C -0.117 4.117 5 C -0.111 4.111 6 C -0.120 4.120 7 C -0.396 4.396 8 H 0.160 0.840 9 S 1.259 4.741 10 O -0.922 6.922 11 C -0.412 4.412 12 C 0.037 3.963 13 C -0.542 4.542 14 H 0.064 0.936 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.257 1.257 19 H -0.282 1.282 20 H -0.274 1.274 21 C -0.094 4.094 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.028 0.972 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.137 0.863 33 H 0.023 0.977 34 H -0.028 1.028 35 H 0.265 0.735 36 H 0.096 0.904 37 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.090 16.224 10.799 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.102 4.102 3 H 0.097 0.903 4 C -0.154 4.154 5 C -0.149 4.149 6 C -0.158 4.158 7 C -0.515 4.515 8 H 0.178 0.822 9 S 1.463 4.537 10 O -0.918 6.918 11 C -0.551 4.551 12 C -0.001 4.001 13 C -0.581 4.581 14 H 0.082 0.918 15 C -0.200 4.200 16 N -0.573 5.573 17 Si 0.792 3.208 18 H -0.182 1.182 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.133 4.133 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.105 0.895 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.155 0.845 33 H 0.041 0.959 34 H -0.010 1.010 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.465 16.531 9.851 21.023 hybrid contribution 1.398 -2.181 1.698 3.098 sum -7.066 14.350 11.549 19.729 Atomic orbital electron populations 1.21944 0.93524 1.02642 1.02564 1.21050 0.97343 0.98684 0.93160 0.90291 1.21594 0.99559 0.95566 0.98718 1.21521 1.01989 0.95609 0.95818 1.21620 0.98946 0.99142 0.96101 1.27574 1.10258 1.03760 1.09907 0.82242 1.69185 0.91988 0.89892 1.02600 1.92965 1.30794 1.84841 1.83158 1.27501 1.09327 1.15094 1.03130 1.18634 0.93896 0.94618 0.92944 1.21619 1.35549 0.94928 1.06011 0.91776 1.26048 0.95121 1.04030 0.94779 1.70101 1.40674 1.35769 1.10802 0.85454 0.79476 0.78276 0.77561 1.18154 1.20757 1.19913 1.21318 0.99199 0.92235 1.00537 0.92106 0.91317 0.91788 0.90386 0.94025 0.92455 0.89540 0.95284 0.92103 0.92188 0.84473 0.95885 1.00972 0.92592 0.88555 0.94549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.50 71.98 0.61 -1.26 16 2 C -0.08 -1.37 3.19 -10.80 -0.03 -1.41 16 3 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 4 C -0.12 -2.18 5.45 30.59 0.17 -2.01 16 5 C -0.11 -2.26 5.65 30.59 0.17 -2.09 16 6 C -0.12 -3.24 4.95 30.60 0.15 -3.09 16 7 C -0.40 -9.21 2.44 30.60 0.07 -9.14 16 8 H 0.16 2.54 6.43 -2.39 -0.02 2.52 16 9 S 1.26 40.93 12.67 -56.49 -0.72 40.22 16 10 O -0.92 -43.68 18.12 -148.98 -2.70 -46.38 16 11 C -0.41 -16.36 5.26 71.98 0.38 -15.98 16 12 C 0.04 2.00 4.98 29.85 0.15 2.15 16 13 C -0.54 -31.23 9.11 25.60 0.23 -30.99 16 14 H 0.06 3.49 7.74 -2.91 -0.02 3.46 16 15 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 16 N -0.93 -57.90 13.29 21.45 0.28 -57.62 16 17 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 18 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 C -0.09 -2.00 4.73 30.59 0.14 -1.85 16 22 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.06 0.80 4.81 -2.38 -0.01 0.79 16 25 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.09 1.45 6.43 -2.39 -0.02 1.43 16 29 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.72 6.51 -2.39 -0.02 1.70 16 31 H 0.06 2.52 6.90 -2.39 -0.02 2.50 16 32 H 0.14 4.40 8.14 -2.39 -0.02 4.38 16 33 H 0.02 1.23 8.14 -2.38 -0.02 1.21 16 34 H -0.03 -1.77 8.14 -2.39 -0.02 -1.79 16 35 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 36 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -78.89 299.49 2.43 -76.47 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 1.02 Total: 6.10 kcal Atomic # 6 Polarization: -67.82 SS G_CDS: 2.51 Total: -65.31 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: 0.28 Total: -57.62 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -2.70 Total: -46.38 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 40.93 SS G_CDS: -0.72 Total: 40.22 kcal Total: -78.89 2.43 -76.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203528686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.904 kcal (2) G-P(sol) polarization free energy of solvation -78.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds