Wall clock time and date at job start Mon Mar 30 2020 05:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46884 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99248 * 2 1 3 5 5 C 1.53000 * 109.47060 * 300.00449 * 4 2 1 6 6 C 1.53002 * 109.47233 * 299.99657 * 5 4 2 7 7 C 1.52997 * 109.46817 * 60.00194 * 6 5 4 8 8 H 1.09002 * 109.47153 * 60.00231 * 7 6 5 9 9 S 1.81399 * 109.47065 * 180.02562 * 7 6 5 10 10 O 1.42105 * 109.46981 * 188.61141 * 9 7 6 11 11 C 1.81406 * 103.00023 * 304.99892 * 9 7 6 12 12 C 1.52995 * 109.46989 * 180.02562 * 11 9 7 13 13 C 1.50705 * 109.46811 * 180.02562 * 12 11 9 14 14 H 1.07997 * 120.00053 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99739 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00187 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99673 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47417 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47523 * 119.99773 * 17 15 13 20 20 H 1.48504 * 109.46677 * 239.99917 * 17 15 13 21 21 C 1.52999 * 109.46623 * 119.99312 * 2 1 3 22 22 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47050 * 300.00592 * 1 2 3 24 24 H 1.09001 * 109.47002 * 60.00326 * 1 2 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 26 26 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 27 27 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 28 28 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 29 29 H 1.08993 * 109.47662 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47075 * 300.00932 * 6 5 4 31 31 H 1.09001 * 109.46694 * 300.00356 * 11 9 7 32 32 H 1.09005 * 109.46394 * 60.00156 * 11 9 7 33 33 H 1.09001 * 109.47112 * 299.99644 * 12 11 9 34 34 H 1.08996 * 109.47296 * 60.00194 * 12 11 9 35 35 H 0.97002 * 120.00281 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.47486 * 299.99829 * 21 2 1 37 37 H 1.09002 * 109.46716 * 179.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5300 -2.1639 -1.2490 6 6 2.0399 -2.8851 0.0003 7 6 1.5299 -2.1637 1.2495 8 1 0.4399 -2.1636 1.2494 9 16 2.1351 -3.0182 2.7307 10 8 1.5048 -2.4741 3.8822 11 6 1.5673 -4.7227 2.4791 12 6 2.0053 -5.5862 3.6637 13 6 1.5342 -7.0023 3.4543 14 1 0.9776 -7.2604 2.5655 15 6 1.8127 -7.9681 4.3981 16 7 2.4900 -7.6537 5.4807 17 14 1.2293 -9.7235 4.1382 18 1 0.4951 -9.8157 2.8507 19 1 2.4011 -10.6351 4.1067 20 1 0.3273 -10.1151 5.2511 21 6 2.0399 -0.7211 1.2494 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 3.1301 -0.7218 -1.2489 26 1 1.6767 -0.2076 -2.1392 27 1 0.4400 -2.1638 -1.2490 28 1 1.8937 -2.6779 -2.1387 29 1 1.6770 -3.9128 0.0003 30 1 3.1299 -2.8850 0.0004 31 1 0.4801 -4.7358 2.4026 32 1 2.0011 -5.1182 1.5606 33 1 3.0925 -5.5730 3.7405 34 1 1.5713 -5.1905 4.5819 35 1 2.6863 -8.3333 6.1445 36 1 1.6766 -0.2072 2.1393 37 1 3.1300 -0.7215 1.2491 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203528690.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:10 Heat of formation + Delta-G solvation = -76.712165 kcal Electronic energy + Delta-G solvation = -15984.854053 eV Core-core repulsion = 13466.310374 eV Total energy + Delta-G solvation = -2518.543679 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.94586 -35.05742 -33.67196 -32.07070 -30.85769 -30.78869 -26.90002 -25.27272 -22.85261 -22.21554 -21.01868 -18.68449 -17.05732 -16.62125 -15.74941 -15.01277 -14.56258 -14.51489 -14.08602 -13.90780 -13.70025 -13.50629 -12.91098 -12.57544 -12.30009 -11.87122 -11.77316 -11.65610 -11.27493 -11.14758 -11.08993 -10.97859 -10.76386 -10.62816 -10.22222 -10.17493 -9.96519 -9.89024 -9.38501 -8.83192 -8.40234 -7.57955 -6.02980 -4.06946 2.06796 3.25786 3.29288 3.36862 3.40558 4.32734 4.44344 4.59401 4.69378 4.81483 5.11914 5.19149 5.27079 5.31830 5.32308 5.47662 5.58635 5.63156 5.73848 5.77171 5.89714 5.95822 5.97087 6.05870 6.11925 6.15916 6.21389 6.26266 6.29514 6.45036 6.86011 7.52644 7.64407 7.92551 8.34233 8.98106 9.57100 11.07724 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.041297 B = 0.005065 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.856377 B = 5526.956439 C = 5912.709055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 H 0.068 0.932 4 C -0.113 4.113 5 C -0.118 4.118 6 C -0.094 4.094 7 C -0.416 4.416 8 H 0.086 0.914 9 S 1.210 4.790 10 O -0.856 6.856 11 C -0.411 4.411 12 C 0.038 3.962 13 C -0.517 4.517 14 H 0.057 0.943 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.284 1.284 21 C -0.087 4.087 22 H 0.061 0.939 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.028 0.972 34 H 0.022 0.978 35 H 0.262 0.738 36 H 0.063 0.937 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.308 13.127 -14.230 19.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.133 4.133 7 C -0.532 4.532 8 H 0.105 0.895 9 S 1.413 4.587 10 O -0.852 6.852 11 C -0.551 4.551 12 C 0.000 4.000 13 C -0.557 4.557 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.532 5.532 17 Si 0.722 3.278 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.210 1.210 21 C -0.125 4.125 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.046 0.954 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.873 13.476 -13.276 19.134 hybrid contribution -2.751 -1.174 -0.229 2.999 sum 0.122 12.302 -13.504 18.268 Atomic orbital electron populations 1.21947 0.95728 1.02157 1.01092 1.21057 0.95766 0.98716 0.95073 0.91385 1.21550 1.00612 0.95802 0.97039 1.21557 1.00892 0.95525 0.97691 1.21255 1.01308 0.98642 0.92051 1.27598 1.07406 1.04394 1.13799 0.89528 1.70095 1.18696 0.87158 0.82793 1.93078 1.78322 1.74817 1.38958 1.27588 1.06731 1.13210 1.07576 1.18790 0.97091 0.93665 0.90503 1.21196 1.35378 0.93324 1.05776 0.92481 1.25043 0.95202 0.99101 0.95124 1.69971 1.39684 1.33874 1.09650 0.86500 0.78541 0.84610 0.78144 1.19768 1.20820 1.21006 1.21187 1.00730 0.92699 0.97902 0.92048 0.93046 0.93100 0.91731 0.92489 0.92081 0.92000 0.91036 0.90494 0.91118 0.87623 0.95358 0.95989 0.92859 0.91849 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.50 37.16 0.32 -1.27 16 2 C -0.09 -0.85 3.20 -90.62 -0.29 -1.14 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.11 -0.99 5.45 -26.73 -0.15 -1.13 16 5 C -0.12 -1.13 5.65 -26.73 -0.15 -1.28 16 6 C -0.09 -1.00 4.95 -26.73 -0.13 -1.13 16 7 C -0.42 -5.37 2.44 -26.73 -0.07 -5.44 16 8 H 0.09 1.25 6.43 -51.92 -0.33 0.91 16 9 S 1.21 19.98 12.66 -107.50 -1.36 18.62 16 10 O -0.86 -19.82 18.14 -35.23 -0.64 -20.46 16 11 C -0.41 -8.18 5.26 37.15 0.20 -7.98 16 12 C 0.04 0.99 4.98 -27.88 -0.14 0.85 16 13 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 17 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 21 C -0.09 -0.99 4.74 -26.73 -0.13 -1.12 16 22 H 0.06 0.70 4.81 -51.93 -0.25 0.45 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.79 6.51 -51.93 -0.34 0.46 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.48 8.14 -51.92 -0.42 1.06 16 32 H 0.11 1.80 6.90 -51.92 -0.36 1.44 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 299.51 15.07 4.51 4.51 Total: -1.00 -35.06 299.51 -8.95 -44.01 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -6.23 Total: -3.95 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: -0.95 Total: -33.11 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.74 Total: -26.26 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.64 Total: -20.46 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 19.98 SS G_CDS: -1.36 Total: 18.62 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -35.06 -8.95 -44.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203528690.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.700 kcal (2) G-P(sol) polarization free energy of solvation -35.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds