Wall clock time and date at job start Mon Mar 30 2020 05:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46884 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99248 * 2 1 3 5 5 C 1.53000 * 109.47060 * 300.00449 * 4 2 1 6 6 C 1.53002 * 109.47233 * 299.99657 * 5 4 2 7 7 C 1.52997 * 109.46817 * 60.00194 * 6 5 4 8 8 H 1.09002 * 109.47153 * 60.00231 * 7 6 5 9 9 S 1.81399 * 109.47065 * 180.02562 * 7 6 5 10 10 O 1.42105 * 109.46981 * 188.61141 * 9 7 6 11 11 C 1.81406 * 103.00023 * 304.99892 * 9 7 6 12 12 C 1.52995 * 109.46989 * 180.02562 * 11 9 7 13 13 C 1.50705 * 109.46811 * 180.02562 * 12 11 9 14 14 H 1.07997 * 120.00053 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99739 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00187 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99673 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47417 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47523 * 119.99773 * 17 15 13 20 20 H 1.48504 * 109.46677 * 239.99917 * 17 15 13 21 21 C 1.52999 * 109.46623 * 119.99312 * 2 1 3 22 22 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47050 * 300.00592 * 1 2 3 24 24 H 1.09001 * 109.47002 * 60.00326 * 1 2 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 26 26 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 27 27 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 28 28 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 29 29 H 1.08993 * 109.47662 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47075 * 300.00932 * 6 5 4 31 31 H 1.09001 * 109.46694 * 300.00356 * 11 9 7 32 32 H 1.09005 * 109.46394 * 60.00156 * 11 9 7 33 33 H 1.09001 * 109.47112 * 299.99644 * 12 11 9 34 34 H 1.08996 * 109.47296 * 60.00194 * 12 11 9 35 35 H 0.97002 * 120.00281 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.47486 * 299.99829 * 21 2 1 37 37 H 1.09002 * 109.46716 * 179.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5300 -2.1639 -1.2490 6 6 2.0399 -2.8851 0.0003 7 6 1.5299 -2.1637 1.2495 8 1 0.4399 -2.1636 1.2494 9 16 2.1351 -3.0182 2.7307 10 8 1.5048 -2.4741 3.8822 11 6 1.5673 -4.7227 2.4791 12 6 2.0053 -5.5862 3.6637 13 6 1.5342 -7.0023 3.4543 14 1 0.9776 -7.2604 2.5655 15 6 1.8127 -7.9681 4.3981 16 7 2.4900 -7.6537 5.4807 17 14 1.2293 -9.7235 4.1382 18 1 0.4951 -9.8157 2.8507 19 1 2.4011 -10.6351 4.1067 20 1 0.3273 -10.1151 5.2511 21 6 2.0399 -0.7211 1.2494 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 3.1301 -0.7218 -1.2489 26 1 1.6767 -0.2076 -2.1392 27 1 0.4400 -2.1638 -1.2490 28 1 1.8937 -2.6779 -2.1387 29 1 1.6770 -3.9128 0.0003 30 1 3.1299 -2.8850 0.0004 31 1 0.4801 -4.7358 2.4026 32 1 2.0011 -5.1182 1.5606 33 1 3.0925 -5.5730 3.7405 34 1 1.5713 -5.1905 4.5819 35 1 2.6863 -8.3333 6.1445 36 1 1.6766 -0.2072 2.1393 37 1 3.1300 -0.7215 1.2491 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203528690.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:09 Heat of formation + Delta-G solvation = -100.025794 kcal Electronic energy + Delta-G solvation = -15985.865007 eV Core-core repulsion = 13466.310374 eV Total energy + Delta-G solvation = -2519.554634 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.78998 -36.73821 -35.75556 -33.15309 -32.63409 -31.70044 -27.83769 -27.21154 -23.98602 -23.13446 -22.72019 -19.52274 -18.77981 -18.30800 -17.02959 -16.51654 -16.13336 -15.62570 -15.44268 -15.31275 -14.76455 -14.64627 -14.28645 -13.96593 -13.58768 -13.40514 -13.08079 -12.86843 -12.73116 -12.59170 -12.42725 -12.06832 -12.00628 -11.91717 -11.86466 -11.57910 -11.39916 -11.04631 -10.86610 -10.61013 -10.38340 -9.07137 -8.22268 -6.35754 0.67231 1.38944 1.39955 1.53008 1.85751 2.39428 2.93316 3.09903 3.71004 3.80466 4.02625 4.22403 4.26462 4.34895 4.44310 4.46485 4.53199 4.62078 4.72042 4.82717 4.94541 4.96774 4.99884 5.10522 5.20151 5.24653 5.28989 5.40554 5.42449 5.47996 5.49018 5.51378 5.66438 5.75945 6.16508 6.79124 7.33801 8.89147 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.041297 B = 0.005065 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.856377 B = 5526.956439 C = 5912.709055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.084 4.084 3 H 0.084 0.916 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.099 4.099 7 C -0.395 4.395 8 H 0.070 0.930 9 S 1.256 4.744 10 O -0.928 6.928 11 C -0.410 4.410 12 C 0.036 3.964 13 C -0.540 4.540 14 H 0.064 0.936 15 C -0.002 4.002 16 N -0.933 5.933 17 Si 0.969 3.031 18 H -0.261 1.261 19 H -0.270 1.270 20 H -0.284 1.284 21 C -0.093 4.093 22 H 0.048 0.952 23 H 0.038 0.962 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.054 0.946 32 H 0.140 0.860 33 H 0.025 0.975 34 H -0.028 1.028 35 H 0.266 0.734 36 H 0.041 0.959 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.053 13.146 -17.225 21.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.104 4.104 3 H 0.102 0.898 4 C -0.147 4.147 5 C -0.156 4.156 6 C -0.138 4.138 7 C -0.514 4.514 8 H 0.089 0.911 9 S 1.461 4.539 10 O -0.924 6.924 11 C -0.549 4.549 12 C -0.002 4.002 13 C -0.579 4.579 14 H 0.082 0.918 15 C -0.200 4.200 16 N -0.573 5.573 17 Si 0.793 3.207 18 H -0.184 1.184 19 H -0.195 1.195 20 H -0.210 1.210 21 C -0.132 4.132 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.124 0.876 31 H 0.073 0.927 32 H 0.158 0.842 33 H 0.043 0.957 34 H -0.010 1.010 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.621 13.465 -16.246 21.409 hybrid contribution -3.002 -1.057 0.625 3.243 sum 0.619 12.408 -15.621 19.959 Atomic orbital electron populations 1.21982 0.96637 1.01372 1.01272 1.21081 0.95011 0.99580 0.94679 0.89762 1.21565 1.01655 0.94904 0.96588 1.21567 1.00347 0.96250 0.97457 1.21414 1.03192 0.98156 0.91002 1.27391 1.06563 1.05392 1.12080 0.91148 1.69157 1.17530 0.84663 0.82533 1.92958 1.79752 1.75878 1.43824 1.27500 1.05781 1.15178 1.06401 1.18653 0.96515 0.94087 0.90925 1.21663 1.35489 0.94610 1.06182 0.91781 1.26048 0.95154 1.04110 0.94672 1.70109 1.40927 1.35626 1.10687 0.85337 0.78326 0.78637 0.78365 1.18441 1.19510 1.20973 1.21328 1.02528 0.91084 0.98217 0.93329 0.94314 0.91532 0.89991 0.91201 0.93166 0.90165 0.91415 0.87569 0.92724 0.84168 0.95673 1.00979 0.92561 0.94003 0.88022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 8.50 71.98 0.61 -2.41 16 2 C -0.08 -1.41 3.20 -10.79 -0.03 -1.45 16 3 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.11 -1.46 5.45 30.59 0.17 -1.29 16 5 C -0.12 -1.82 5.65 30.60 0.17 -1.65 16 6 C -0.10 -1.80 4.95 30.59 0.15 -1.65 16 7 C -0.39 -9.69 2.44 30.60 0.07 -9.61 16 8 H 0.07 2.01 6.43 -2.39 -0.02 2.00 16 9 S 1.26 41.93 12.66 -56.49 -0.72 41.22 16 10 O -0.93 -45.04 18.14 -148.98 -2.70 -47.74 16 11 C -0.41 -16.53 5.26 71.98 0.38 -16.15 16 12 C 0.04 1.97 4.98 29.85 0.15 2.11 16 13 C -0.54 -31.18 9.11 25.60 0.23 -30.95 16 14 H 0.06 3.51 7.74 -2.91 -0.02 3.48 16 15 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 16 N -0.93 -57.81 13.29 21.45 0.28 -57.52 16 17 Si 0.97 44.51 29.54 68.60 2.03 46.53 16 18 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 21 C -0.09 -1.94 4.74 30.60 0.14 -1.79 16 22 H 0.05 1.06 4.81 -2.39 -0.01 1.05 16 23 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.05 0.90 6.43 -2.39 -0.02 0.88 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.31 6.51 -2.39 -0.02 1.29 16 30 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.14 4.57 6.90 -2.39 -0.02 4.55 16 33 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 34 H -0.03 -1.78 8.14 -2.39 -0.02 -1.80 16 35 H 0.27 15.32 8.31 -92.71 -0.77 14.54 16 36 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -79.15 299.51 2.42 -76.73 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 1.02 Total: 5.27 kcal Atomic # 6 Polarization: -66.99 SS G_CDS: 2.51 Total: -64.48 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.28 Total: -57.52 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -2.70 Total: -47.74 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 41.93 SS G_CDS: -0.72 Total: 41.22 kcal Total: -79.15 2.42 -76.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203528690.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.298 kcal (2) G-P(sol) polarization free energy of solvation -79.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds