Wall clock time and date at job start Mon Mar 30 2020 05:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.67547 * 2 1 4 4 C 1.54995 * 110.61960 * 237.03138 * 2 1 3 5 5 C 1.54813 * 102.09037 * 204.47543 * 4 2 1 6 6 C 1.54093 * 104.19011 * 20.87909 * 5 4 2 7 7 H 1.09000 * 109.88019 * 242.60250 * 6 5 4 8 8 C 1.53009 * 109.87826 * 121.45290 * 6 5 4 9 9 O 1.42897 * 109.46933 * 303.83931 * 8 6 5 10 10 Si 1.63100 * 113.99891 * 150.00183 * 9 8 6 11 11 C 1.86302 * 109.47492 * 59.99599 * 10 9 8 12 12 C 1.86304 * 109.46963 * 179.97438 * 10 9 8 13 13 C 1.86297 * 109.47076 * 299.99307 * 10 9 8 14 14 C 1.50696 * 109.47160 * 183.83653 * 8 6 5 15 15 N 1.27952 * 119.99843 * 274.36714 * 14 8 6 16 16 Si 1.86795 * 119.99956 * 94.36570 * 14 8 6 17 17 H 1.48500 * 109.47289 * 95.25880 * 16 14 8 18 18 H 1.48504 * 109.47143 * 215.25633 * 16 14 8 19 19 H 1.48498 * 109.47519 * 335.25400 * 16 14 8 20 20 O 1.43745 * 107.29549 * 2.02958 * 6 5 4 21 21 H 1.09005 * 109.46875 * 298.49364 * 1 2 3 22 22 H 1.08995 * 109.47091 * 58.49341 * 1 2 3 23 23 H 1.08996 * 109.47001 * 178.49805 * 1 2 3 24 24 H 1.08995 * 110.90638 * 86.27332 * 4 2 1 25 25 H 1.09001 * 110.90606 * 322.66974 * 4 2 1 26 26 H 1.09000 * 110.48887 * 262.19801 * 5 4 2 27 27 H 1.09006 * 110.48341 * 139.55713 * 5 4 2 28 28 H 1.09002 * 109.47053 * 63.83477 * 8 6 5 29 29 H 1.09002 * 109.46918 * 59.99589 * 11 10 9 30 30 H 1.08990 * 109.47232 * 179.97438 * 11 10 9 31 31 H 1.08999 * 109.46465 * 300.00395 * 11 10 9 32 32 H 1.09004 * 109.47116 * 59.99866 * 12 10 9 33 33 H 1.08997 * 109.46876 * 179.97438 * 12 10 9 34 34 H 1.08993 * 109.46958 * 299.99841 * 12 10 9 35 35 H 1.09003 * 109.47022 * 60.00336 * 13 10 9 36 36 H 1.08997 * 109.47450 * 180.02562 * 13 10 9 37 37 H 1.09004 * 109.47251 * 300.00285 * 13 10 9 38 38 H 0.96995 * 119.99514 * 180.02562 * 15 14 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0758 -0.7894 -1.2171 5 6 3.4795 -1.2167 -0.7233 6 6 3.3840 -1.1253 0.8119 7 1 4.0854 -0.3781 1.1831 8 6 3.6935 -2.4882 1.4346 9 8 2.8095 -3.4714 0.8925 10 14 3.4464 -4.9713 0.8254 11 6 3.9027 -5.5298 2.5432 12 6 2.1937 -6.1462 0.1033 13 6 4.9701 -4.9516 -0.2465 14 6 3.5058 -2.4126 2.9279 15 7 4.4627 -2.0049 3.6731 16 14 1.8762 -2.9140 3.6909 17 1 1.9517 -4.3294 4.1340 18 1 1.5884 -2.0442 4.8596 19 1 0.7929 -2.7670 2.6859 20 8 2.0385 -0.7351 1.1339 21 1 -0.3633 0.4903 0.9032 22 1 -0.3633 0.5370 -0.8761 23 1 -0.3633 -1.0273 -0.0269 24 1 2.1509 -0.1478 -2.0949 25 1 1.4550 -1.6607 -1.4257 26 1 4.2407 -0.5333 -1.0996 27 1 3.6975 -2.2392 -1.0318 28 1 4.7242 -2.7640 1.2114 29 1 3.0113 -5.5412 3.1703 30 1 4.3280 -6.5323 2.4984 31 1 4.6355 -4.8424 2.9659 32 1 1.9264 -5.8197 -0.9017 33 1 2.6196 -7.1485 0.0581 34 1 1.3026 -6.1576 0.7307 35 1 5.7029 -4.2643 0.1764 36 1 5.3955 -5.9541 -0.2917 37 1 4.7031 -4.6249 -1.2515 38 1 4.3420 -1.9566 4.6343 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215281653.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:47 Heat of formation + Delta-G solvation = -108.883822 kcal Electronic energy + Delta-G solvation = -17561.197141 eV Core-core repulsion = 14948.056232 eV Total energy + Delta-G solvation = -2613.140909 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.85158 -38.35263 -35.87136 -33.13261 -32.61636 -29.62340 -29.27456 -28.55295 -28.34950 -25.48466 -22.44147 -21.95450 -21.03666 -18.68304 -17.52765 -16.89570 -16.77488 -16.03483 -15.79546 -14.83792 -14.73041 -14.45901 -14.27010 -14.00563 -13.88976 -13.63593 -13.53422 -13.32944 -13.21763 -13.15579 -13.00021 -12.72187 -12.53105 -12.42801 -12.07352 -11.94322 -11.79372 -11.65932 -11.52189 -11.15563 -10.77788 -10.54839 -10.39050 -9.78614 0.77372 1.17858 1.37175 1.60978 1.75995 1.81987 1.96317 2.19109 2.41163 2.84459 3.47563 3.68957 3.83304 3.98795 4.07303 4.22385 4.34162 4.44445 4.54833 4.65107 4.67434 4.67651 4.70727 4.72143 4.72782 4.73766 4.81774 4.89954 4.93476 5.05117 5.11811 5.26934 5.31852 5.36249 5.45369 5.53418 5.58021 6.10369 6.82219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.071 3.929 3 H 0.068 0.932 4 C -0.146 4.146 5 C -0.148 4.148 6 C 0.090 3.910 7 H 0.084 0.916 8 C 0.152 3.848 9 O -0.602 6.602 10 Si 1.240 2.760 11 C -0.521 4.521 12 C -0.464 4.464 13 C -0.506 4.506 14 C -0.018 4.018 15 N -0.629 5.629 16 Si 0.924 3.076 17 H -0.237 1.237 18 H -0.256 1.256 19 H -0.209 1.209 20 O -0.359 6.359 21 H 0.061 0.939 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.142 -0.188 -2.240 2.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 H 0.086 0.914 4 C -0.183 4.183 5 C -0.186 4.186 6 C 0.031 3.969 7 H 0.102 0.898 8 C 0.094 3.906 9 O -0.560 6.560 10 Si 1.377 2.623 11 C -0.623 4.623 12 C -0.571 4.571 13 C -0.608 4.608 14 C -0.267 4.267 15 N -0.243 5.243 16 Si 0.740 3.260 17 H -0.161 1.161 18 H -0.180 1.180 19 H -0.130 1.130 20 O -0.278 6.278 21 H 0.080 0.920 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.274 0.031 -1.907 1.927 hybrid contribution 0.281 -0.407 0.427 0.653 sum 0.007 -0.376 -1.481 1.528 Atomic orbital electron populations 1.21774 0.93139 1.03153 1.02370 1.23132 0.95308 0.95023 0.85117 0.91410 1.23136 0.96137 1.00906 0.98159 1.22914 0.98096 1.03393 0.94209 1.22803 0.86142 0.93216 0.94722 0.89783 1.20677 0.92490 0.88930 0.88462 1.85471 1.54065 1.36488 1.79941 0.77479 0.63278 0.55523 0.65985 1.27226 1.06233 1.06947 1.21867 1.26264 1.12328 1.10882 1.07584 1.26933 1.17837 1.04816 1.11254 1.30929 1.03278 0.93457 0.99025 1.68046 1.33650 1.10793 1.11815 0.85708 0.78785 0.80904 0.80622 1.16129 1.17996 1.13041 1.88895 1.26866 1.73319 1.38735 0.91955 0.91205 0.91493 0.90502 0.89851 0.90618 0.89645 0.88836 0.90576 0.90511 0.91124 0.90633 0.90483 0.90690 0.91235 0.90659 0.90806 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.02 9.66 37.16 0.36 0.38 16 2 C 0.07 0.03 3.98 -25.68 -0.10 -0.07 16 3 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 4 C -0.15 0.12 6.59 -24.72 -0.16 -0.05 16 5 C -0.15 0.14 6.39 -25.21 -0.16 -0.02 16 6 C 0.09 0.06 3.28 -26.16 -0.09 -0.03 16 7 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 8 C 0.15 0.08 1.73 -27.88 -0.05 0.03 16 9 O -0.60 -0.16 6.07 -42.22 -0.26 -0.42 16 10 Si 1.24 -1.63 11.96 -169.99 -2.03 -3.67 16 11 C -0.52 0.08 7.44 101.05 0.75 0.83 16 12 C -0.46 0.46 8.65 101.05 0.87 1.34 16 13 C -0.51 0.68 8.56 101.05 0.87 1.55 16 14 C -0.02 -0.03 3.35 -13.90 -0.05 -0.07 16 15 N -0.63 -1.06 13.82 56.23 0.78 -0.29 16 16 Si 0.92 1.88 25.14 -169.99 -4.27 -2.40 16 17 H -0.24 -0.33 5.62 56.52 0.32 -0.01 16 18 H -0.26 -0.69 7.11 56.52 0.40 -0.28 16 19 H -0.21 -0.60 7.11 56.52 0.40 -0.20 16 20 O -0.36 -0.83 9.45 -42.22 -0.40 -1.23 16 21 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 22 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 23 H 0.07 0.03 8.13 -51.93 -0.42 -0.39 16 24 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 25 H 0.08 -0.04 8.05 -51.93 -0.42 -0.46 16 26 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 27 H 0.08 -0.13 7.26 -51.93 -0.38 -0.50 16 28 H 0.09 -0.10 6.15 -51.93 -0.32 -0.42 16 29 H 0.08 0.03 5.62 -51.93 -0.29 -0.26 16 30 H 0.08 -0.06 7.96 -51.93 -0.41 -0.47 16 31 H 0.07 0.02 7.24 -51.93 -0.38 -0.36 16 32 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 33 H 0.08 -0.12 7.96 -51.93 -0.41 -0.54 16 34 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 35 H 0.07 -0.09 7.10 -51.93 -0.37 -0.46 16 36 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 37 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 38 H 0.34 0.13 8.23 -40.82 -0.34 -0.21 16 LS Contribution 300.31 15.07 4.53 4.53 Total: 0.00 -2.87 300.31 -6.22 -9.09 By element: Atomic # 1 Polarization: -2.70 SS G_CDS: -6.81 Total: -9.50 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 2.24 Total: 3.89 kcal Atomic # 7 Polarization: -1.06 SS G_CDS: 0.78 Total: -0.29 kcal Atomic # 8 Polarization: -0.99 SS G_CDS: -0.66 Total: -1.65 kcal Atomic # 14 Polarization: 0.24 SS G_CDS: -6.31 Total: -6.06 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -2.87 -6.22 -9.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215281653.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.798 kcal (2) G-P(sol) polarization free energy of solvation -2.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds