Wall clock time and date at job start Mon Mar 30 2020 05:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.67547 * 2 1 4 4 C 1.54995 * 110.61960 * 237.03138 * 2 1 3 5 5 C 1.54813 * 102.09037 * 204.47543 * 4 2 1 6 6 C 1.54093 * 104.19011 * 20.87909 * 5 4 2 7 7 H 1.09000 * 109.88019 * 242.60250 * 6 5 4 8 8 C 1.53009 * 109.87826 * 121.45290 * 6 5 4 9 9 O 1.42897 * 109.46933 * 303.83931 * 8 6 5 10 10 Si 1.63100 * 113.99891 * 150.00183 * 9 8 6 11 11 C 1.86302 * 109.47492 * 59.99599 * 10 9 8 12 12 C 1.86304 * 109.46963 * 179.97438 * 10 9 8 13 13 C 1.86297 * 109.47076 * 299.99307 * 10 9 8 14 14 C 1.50696 * 109.47160 * 183.83653 * 8 6 5 15 15 N 1.27952 * 119.99843 * 274.36714 * 14 8 6 16 16 Si 1.86795 * 119.99956 * 94.36570 * 14 8 6 17 17 H 1.48500 * 109.47289 * 95.25880 * 16 14 8 18 18 H 1.48504 * 109.47143 * 215.25633 * 16 14 8 19 19 H 1.48498 * 109.47519 * 335.25400 * 16 14 8 20 20 O 1.43745 * 107.29549 * 2.02958 * 6 5 4 21 21 H 1.09005 * 109.46875 * 298.49364 * 1 2 3 22 22 H 1.08995 * 109.47091 * 58.49341 * 1 2 3 23 23 H 1.08996 * 109.47001 * 178.49805 * 1 2 3 24 24 H 1.08995 * 110.90638 * 86.27332 * 4 2 1 25 25 H 1.09001 * 110.90606 * 322.66974 * 4 2 1 26 26 H 1.09000 * 110.48887 * 262.19801 * 5 4 2 27 27 H 1.09006 * 110.48341 * 139.55713 * 5 4 2 28 28 H 1.09002 * 109.47053 * 63.83477 * 8 6 5 29 29 H 1.09002 * 109.46918 * 59.99589 * 11 10 9 30 30 H 1.08990 * 109.47232 * 179.97438 * 11 10 9 31 31 H 1.08999 * 109.46465 * 300.00395 * 11 10 9 32 32 H 1.09004 * 109.47116 * 59.99866 * 12 10 9 33 33 H 1.08997 * 109.46876 * 179.97438 * 12 10 9 34 34 H 1.08993 * 109.46958 * 299.99841 * 12 10 9 35 35 H 1.09003 * 109.47022 * 60.00336 * 13 10 9 36 36 H 1.08997 * 109.47450 * 180.02562 * 13 10 9 37 37 H 1.09004 * 109.47251 * 300.00285 * 13 10 9 38 38 H 0.96995 * 119.99514 * 180.02562 * 15 14 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0758 -0.7894 -1.2171 5 6 3.4795 -1.2167 -0.7233 6 6 3.3840 -1.1253 0.8119 7 1 4.0854 -0.3781 1.1831 8 6 3.6935 -2.4882 1.4346 9 8 2.8095 -3.4714 0.8925 10 14 3.4464 -4.9713 0.8254 11 6 3.9027 -5.5298 2.5432 12 6 2.1937 -6.1462 0.1033 13 6 4.9701 -4.9516 -0.2465 14 6 3.5058 -2.4126 2.9279 15 7 4.4627 -2.0049 3.6731 16 14 1.8762 -2.9140 3.6909 17 1 1.9517 -4.3294 4.1340 18 1 1.5884 -2.0442 4.8596 19 1 0.7929 -2.7670 2.6859 20 8 2.0385 -0.7351 1.1339 21 1 -0.3633 0.4903 0.9032 22 1 -0.3633 0.5370 -0.8761 23 1 -0.3633 -1.0273 -0.0269 24 1 2.1509 -0.1478 -2.0949 25 1 1.4550 -1.6607 -1.4257 26 1 4.2407 -0.5333 -1.0996 27 1 3.6975 -2.2392 -1.0318 28 1 4.7242 -2.7640 1.2114 29 1 3.0113 -5.5412 3.1703 30 1 4.3280 -6.5323 2.4984 31 1 4.6355 -4.8424 2.9659 32 1 1.9264 -5.8197 -0.9017 33 1 2.6196 -7.1485 0.0581 34 1 1.3026 -6.1576 0.7307 35 1 5.7029 -4.2643 0.1764 36 1 5.3955 -5.9541 -0.2917 37 1 4.7031 -4.6249 -1.2515 38 1 4.3420 -1.9566 4.6343 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215281653.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:46 Heat of formation + Delta-G solvation = -99.568108 kcal Electronic energy + Delta-G solvation = -17560.793182 eV Core-core repulsion = 14948.056232 eV Total energy + Delta-G solvation = -2612.736950 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.84682 -38.36574 -35.94773 -33.12718 -32.58603 -29.54009 -29.25974 -28.47323 -28.26877 -25.47266 -22.43591 -21.91771 -21.08284 -18.71118 -17.51966 -16.96834 -16.76963 -16.07886 -15.79422 -14.85939 -14.75165 -14.43421 -14.22916 -13.97444 -13.86793 -13.61295 -13.48576 -13.24351 -13.14994 -13.08075 -12.98409 -12.70844 -12.52766 -12.41017 -12.14158 -11.98321 -11.82843 -11.63578 -11.49811 -11.18914 -10.70330 -10.51257 -10.40645 -9.88922 0.65331 1.04282 1.36291 1.46081 1.60719 1.91328 1.98626 2.07572 2.48586 2.86746 3.45427 3.74674 3.87051 4.03648 4.12684 4.26373 4.37682 4.46663 4.58838 4.70764 4.73009 4.74183 4.78543 4.80455 4.82136 4.82771 4.84546 4.92875 5.04676 5.09137 5.20826 5.31474 5.37046 5.39362 5.51697 5.62686 5.66548 6.11823 6.73791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.063 3.937 3 H 0.074 0.926 4 C -0.143 4.143 5 C -0.147 4.147 6 C 0.084 3.916 7 H 0.085 0.915 8 C 0.147 3.853 9 O -0.611 6.611 10 Si 1.267 2.733 11 C -0.532 4.532 12 C -0.473 4.473 13 C -0.507 4.507 14 C -0.014 4.014 15 N -0.636 5.636 16 Si 0.925 3.075 17 H -0.229 1.229 18 H -0.268 1.268 19 H -0.225 1.225 20 O -0.382 6.382 21 H 0.054 0.946 22 H 0.085 0.915 23 H 0.057 0.943 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.112 0.888 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.559 -0.249 -3.175 3.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.006 3.994 3 H 0.091 0.909 4 C -0.180 4.180 5 C -0.185 4.185 6 C 0.025 3.975 7 H 0.103 0.897 8 C 0.089 3.911 9 O -0.569 6.569 10 Si 1.403 2.597 11 C -0.633 4.633 12 C -0.579 4.579 13 C -0.610 4.610 14 C -0.264 4.264 15 N -0.251 5.251 16 Si 0.743 3.257 17 H -0.153 1.153 18 H -0.193 1.193 19 H -0.146 1.146 20 O -0.302 6.302 21 H 0.073 0.927 22 H 0.103 0.897 23 H 0.076 0.924 24 H 0.109 0.891 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.129 0.871 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.421 -0.044 -2.825 2.856 hybrid contribution 0.022 -0.383 0.752 0.844 sum 0.443 -0.427 -2.073 2.163 Atomic orbital electron populations 1.21782 0.93139 1.02699 1.02717 1.23292 0.95452 0.95377 0.85266 0.90857 1.23123 0.96063 1.00767 0.98091 1.22952 0.98335 1.04228 0.92958 1.22932 0.85502 0.93175 0.95904 0.89727 1.20811 0.93394 0.89227 0.87635 1.85463 1.54561 1.37009 1.79842 0.77024 0.63060 0.54603 0.64986 1.27379 1.05811 1.07354 1.22748 1.26360 1.12349 1.11550 1.07664 1.26916 1.17559 1.05110 1.11405 1.30924 1.02538 0.93187 0.99737 1.68046 1.33668 1.11037 1.12300 0.85692 0.79061 0.81131 0.79797 1.15296 1.19338 1.14634 1.88874 1.27771 1.73688 1.39851 0.92731 0.89657 0.92381 0.89091 0.90387 0.89265 0.88961 0.87089 0.91450 0.89942 0.91480 0.90417 0.89810 0.91243 0.91005 0.90396 0.90310 0.83659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.04 9.66 71.98 0.70 0.66 16 2 C 0.06 0.06 3.98 31.28 0.12 0.19 16 3 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 4 C -0.14 0.30 6.59 31.90 0.21 0.51 16 5 C -0.15 0.40 6.39 31.58 0.20 0.61 16 6 C 0.08 0.10 3.28 30.97 0.10 0.20 16 7 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 8 C 0.15 0.15 1.73 29.85 0.05 0.20 16 9 O -0.61 -0.38 6.07 -142.30 -0.86 -1.25 16 10 Si 1.27 -3.61 11.96 68.60 0.82 -2.79 16 11 C -0.53 0.07 7.44 113.37 0.84 0.91 16 12 C -0.47 0.97 8.65 113.37 0.98 1.95 16 13 C -0.51 1.91 8.56 113.37 0.97 2.88 16 14 C -0.01 -0.05 3.35 88.67 0.30 0.25 16 15 N -0.64 -2.35 13.82 24.11 0.33 -2.02 16 16 Si 0.93 4.91 25.14 68.60 1.72 6.64 16 17 H -0.23 -0.85 5.62 99.48 0.56 -0.29 16 18 H -0.27 -1.90 7.11 99.48 0.71 -1.19 16 19 H -0.22 -1.72 7.11 99.48 0.71 -1.01 16 20 O -0.38 -2.03 9.45 -142.30 -1.34 -3.37 16 21 H 0.05 0.09 8.14 -2.38 -0.02 0.07 16 22 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 23 H 0.06 0.11 8.13 -2.39 -0.02 0.09 16 24 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 25 H 0.08 -0.08 8.05 -2.39 -0.02 -0.10 16 26 H 0.09 -0.49 8.14 -2.39 -0.02 -0.50 16 27 H 0.09 -0.38 7.26 -2.38 -0.02 -0.40 16 28 H 0.11 -0.32 6.15 -2.39 -0.01 -0.33 16 29 H 0.07 0.10 5.62 -2.39 -0.01 0.09 16 30 H 0.08 -0.13 7.96 -2.39 -0.02 -0.15 16 31 H 0.07 0.04 7.24 -2.39 -0.02 0.02 16 32 H 0.08 -0.19 7.96 -2.39 -0.02 -0.21 16 33 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 34 H 0.07 -0.06 7.96 -2.39 -0.02 -0.08 16 35 H 0.07 -0.28 7.10 -2.39 -0.02 -0.30 16 36 H 0.08 -0.31 7.96 -2.39 -0.02 -0.33 16 37 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 38 H 0.35 0.47 8.23 -92.71 -0.76 -0.30 16 Total: 0.00 -6.87 300.31 6.01 -0.86 By element: Atomic # 1 Polarization: -7.28 SS G_CDS: 0.86 Total: -6.42 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 4.48 Total: 8.35 kcal Atomic # 7 Polarization: -2.35 SS G_CDS: 0.33 Total: -2.02 kcal Atomic # 8 Polarization: -2.41 SS G_CDS: -2.21 Total: -4.62 kcal Atomic # 14 Polarization: 1.30 SS G_CDS: 2.55 Total: 3.85 kcal Total: -6.87 6.01 -0.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215281653.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.709 kcal (2) G-P(sol) polarization free energy of solvation -6.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -0.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds