Wall clock time and date at job start Mon Mar 30 2020 06:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33182 * 126.24125 * 2 1 4 4 C 1.31057 * 109.98926 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.32265 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47266 * 42.03413 * 5 4 3 7 7 C 1.52995 * 109.47223 * 282.03594 * 5 4 3 8 8 N 1.35616 * 109.35455 * 0.26100 * 4 3 2 9 9 C 1.38186 * 106.91461 * 359.58153 * 8 4 3 10 10 C 1.40060 * 120.27186 * 180.15889 * 9 8 4 11 11 C 1.38458 * 119.83372 * 0.28828 * 10 9 8 12 12 C 1.38616 * 119.95081 * 359.97438 * 11 10 9 13 13 C 1.38500 * 133.13978 * 180.42145 * 8 4 3 14 14 C 1.39255 * 120.03189 * 359.31080 * 13 8 4 15 15 H 1.07998 * 120.00482 * 324.29320 * 14 13 8 16 16 C 1.40126 * 119.99738 * 144.29958 * 14 13 8 17 17 N 1.30794 * 119.99890 * 350.34128 * 16 14 13 18 18 Si 1.86799 * 120.00236 * 170.34294 * 16 14 13 19 19 H 1.48496 * 109.47105 * 59.99776 * 18 16 14 20 20 H 1.48496 * 109.47112 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46846 * 299.99743 * 18 16 14 22 22 H 1.08999 * 109.46705 * 89.97596 * 1 2 3 23 23 H 1.08995 * 109.47115 * 209.97740 * 1 2 3 24 24 H 1.08994 * 109.46872 * 329.98456 * 1 2 3 25 25 H 1.08999 * 109.47224 * 162.03004 * 5 4 3 26 26 H 1.08995 * 109.47265 * 179.97438 * 6 5 4 27 27 H 1.09000 * 109.46972 * 59.99427 * 6 5 4 28 28 H 1.09004 * 109.47134 * 299.99996 * 6 5 4 29 29 H 1.09005 * 109.47521 * 179.97438 * 7 5 4 30 30 H 1.09001 * 109.46916 * 299.99663 * 7 5 4 31 31 H 1.08999 * 109.47502 * 59.99580 * 7 5 4 32 32 H 1.07997 * 120.08193 * 180.26137 * 10 9 8 33 33 H 1.08000 * 120.02605 * 179.97438 * 11 10 9 34 34 H 1.08004 * 119.96547 * 180.02562 * 12 11 10 35 35 H 0.96996 * 119.99643 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2944 1.0742 0.0000 4 6 3.5526 0.7074 -0.0006 5 6 4.7332 1.6440 -0.0013 6 6 4.4674 2.8005 0.9645 7 6 4.9452 2.1964 -1.4122 8 7 3.6260 -0.6468 -0.0068 9 6 2.3276 -1.1198 -0.0005 10 6 2.0783 -2.4981 -0.0014 11 6 3.1376 -3.3897 -0.0026 12 6 4.4405 -2.9164 -0.0034 13 6 4.6864 -1.5378 -0.0025 14 6 5.9955 -1.0631 -0.0038 15 1 6.2447 -0.1673 -0.5532 16 6 6.9897 -1.7478 0.7078 17 7 6.6610 -2.7170 1.5223 18 14 8.7845 -1.2765 0.4931 19 1 8.9741 0.1425 0.8873 20 1 9.6303 -2.1452 1.3505 21 1 9.1756 -1.4520 -0.9286 22 1 -0.3633 0.0004 -1.0277 23 1 -0.3633 -0.8901 0.5135 24 1 -0.3633 0.8898 0.5141 25 1 5.6256 1.1041 0.3154 26 1 5.3215 3.4777 0.9643 27 1 4.3163 2.4070 1.9697 28 1 3.5750 3.3405 0.6479 29 1 5.7988 2.8742 -1.4127 30 1 5.1346 1.3725 -2.1003 31 1 4.0528 2.7363 -1.7289 32 1 1.0624 -2.8644 -0.0007 33 1 2.9489 -4.4531 -0.0028 34 1 5.2670 -3.6117 -0.0047 35 1 7.3491 -3.1907 2.0151 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215678649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:08 Heat of formation + Delta-G solvation = 50.070233 kcal Electronic energy + Delta-G solvation = -17829.781084 eV Core-core repulsion = 15213.583903 eV Total energy + Delta-G solvation = -2616.197182 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.31654 -36.31878 -35.03352 -33.50485 -32.15200 -29.41104 -29.28366 -26.58033 -26.12853 -24.83168 -22.16669 -21.63515 -20.10944 -18.95232 -17.24165 -16.06754 -15.64873 -14.72128 -14.61572 -14.27712 -13.89795 -13.44178 -13.23547 -12.59120 -12.35234 -12.27397 -11.97024 -11.74128 -11.58775 -11.54305 -11.36778 -10.96288 -10.76101 -10.65348 -10.58199 -10.22803 -10.16440 -9.83736 -9.52725 -9.03965 -8.97040 -7.79917 -7.19103 -6.27373 -4.68013 2.19262 2.70674 2.86359 2.88577 2.90454 3.60526 4.00094 4.07673 4.37310 5.08333 5.27267 5.63063 5.75244 5.83186 5.97436 5.99613 6.14075 6.20468 6.34686 6.36384 6.39494 6.43791 6.47016 6.52926 6.61017 6.63641 6.75340 6.83936 6.85865 7.02555 7.24994 7.50438 7.64415 7.78814 7.93788 8.03309 8.17050 8.34926 8.77939 9.20052 9.77926 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.020522 B = 0.010627 C = 0.007503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.034263 B = 2634.152060 C = 3730.772285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.092 4.092 3 N -0.452 5.452 4 C 0.137 3.863 5 C -0.012 4.012 6 C -0.130 4.130 7 C -0.137 4.137 8 N -0.374 5.374 9 C 0.070 3.930 10 C -0.248 4.248 11 C -0.052 4.052 12 C -0.245 4.245 13 C 0.286 3.714 14 C -0.462 4.462 15 H 0.098 0.902 16 C 0.080 3.920 17 N -0.772 5.772 18 Si 0.923 3.077 19 H -0.259 1.259 20 H -0.273 1.273 21 H -0.258 1.258 22 H 0.048 0.952 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.104 0.896 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.130 0.870 35 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.630 2.513 -1.496 2.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.225 4.225 3 N -0.167 5.167 4 C -0.117 4.117 5 C -0.032 4.032 6 C -0.188 4.188 7 C -0.195 4.195 8 N -0.047 5.047 9 C -0.041 4.041 10 C -0.269 4.269 11 C -0.073 4.073 12 C -0.266 4.266 13 C 0.184 3.816 14 C -0.493 4.493 15 H 0.116 0.884 16 C -0.143 4.143 17 N -0.396 5.396 18 Si 0.745 3.255 19 H -0.183 1.183 20 H -0.197 1.197 21 H -0.182 1.182 22 H 0.067 0.933 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.122 0.878 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.129 0.871 33 H 0.121 0.879 34 H 0.148 0.852 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.518 3.268 -1.323 3.563 hybrid contribution 1.008 -0.934 0.064 1.376 sum 1.526 2.334 -1.260 3.060 Atomic orbital electron populations 1.19629 0.88792 1.00884 1.00290 1.20475 0.95040 0.87120 1.19859 1.69394 0.99734 1.30683 1.16918 1.22460 0.93736 0.80198 1.15262 1.19690 0.94013 0.93542 0.95990 1.21666 1.01071 0.97199 0.98898 1.21786 1.00999 1.00398 0.96309 1.43653 1.06788 1.06790 1.47429 1.19280 0.83988 0.94510 1.06329 1.19822 0.98107 0.89203 1.19759 1.20873 0.93012 0.97688 0.95777 1.20678 0.95811 0.92747 1.17371 1.18003 0.85469 0.87768 0.90376 1.19164 0.90923 1.11510 1.27738 0.88422 1.25899 1.02157 0.93547 0.92701 1.69777 1.36934 1.16089 1.16758 0.86093 0.79411 0.80019 0.79947 1.18308 1.19748 1.18239 0.93318 0.92647 0.92640 0.87799 0.93145 0.93147 0.92115 0.92801 0.93048 0.92627 0.87095 0.87935 0.85192 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.70 10.44 36.01 0.38 -0.33 16 2 C -0.09 -2.17 7.23 -81.79 -0.59 -2.76 16 3 N -0.45 -10.89 10.84 -6.08 -0.07 -10.95 16 4 C 0.14 3.27 6.63 -154.42 -1.02 2.24 16 5 C -0.01 -0.25 2.64 -91.77 -0.24 -0.49 16 6 C -0.13 -2.30 9.02 37.16 0.34 -1.97 16 7 C -0.14 -2.41 9.10 37.16 0.34 -2.07 16 8 N -0.37 -9.56 3.01 -55.58 -0.17 -9.72 16 9 C 0.07 1.74 6.74 -84.10 -0.57 1.17 16 10 C -0.25 -5.69 10.13 -38.82 -0.39 -6.08 16 11 C -0.05 -1.17 10.07 -39.36 -0.40 -1.57 16 12 C -0.24 -6.05 8.58 -38.77 -0.33 -6.38 16 13 C 0.29 7.32 6.34 -83.80 -0.53 6.79 16 14 C -0.46 -11.11 7.36 -38.50 -0.28 -11.39 16 15 H 0.10 2.23 5.71 -52.49 -0.30 1.93 16 16 C 0.08 1.80 5.21 -17.29 -0.09 1.71 16 17 N -0.77 -18.16 11.25 55.56 0.62 -17.53 16 18 Si 0.92 16.76 29.57 -169.99 -5.03 11.73 16 19 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 20 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 21 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.10 2.19 4.92 -51.93 -0.26 1.94 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.08 8.04 -51.93 -0.42 0.66 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.11 2.23 8.06 -52.49 -0.42 1.81 16 33 H 0.10 1.99 8.06 -52.49 -0.42 1.56 16 34 H 0.13 3.21 6.68 -52.48 -0.35 2.86 16 35 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 LS Contribution 290.35 15.07 4.38 4.38 Total: -1.00 -27.50 290.35 -8.35 -35.85 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -4.69 Total: 7.39 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -3.40 Total: -21.14 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.39 Total: -38.21 kcal Atomic # 14 Polarization: 16.76 SS G_CDS: -5.03 Total: 11.73 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.50 -8.35 -35.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215678649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.921 kcal (2) G-P(sol) polarization free energy of solvation -27.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds