Wall clock time and date at job start Mon Mar 30 2020 06:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33182 * 126.24125 * 2 1 4 4 C 1.31057 * 109.98926 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.32265 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47266 * 42.03413 * 5 4 3 7 7 C 1.52995 * 109.47223 * 282.03594 * 5 4 3 8 8 N 1.35616 * 109.35455 * 0.26100 * 4 3 2 9 9 C 1.38186 * 106.91461 * 359.58153 * 8 4 3 10 10 C 1.40060 * 120.27186 * 180.15889 * 9 8 4 11 11 C 1.38458 * 119.83372 * 0.28828 * 10 9 8 12 12 C 1.38616 * 119.95081 * 359.97438 * 11 10 9 13 13 C 1.38500 * 133.13978 * 180.42145 * 8 4 3 14 14 C 1.39255 * 120.03189 * 359.31080 * 13 8 4 15 15 H 1.07998 * 120.00482 * 324.29320 * 14 13 8 16 16 C 1.40126 * 119.99738 * 144.29958 * 14 13 8 17 17 N 1.30794 * 119.99890 * 350.34128 * 16 14 13 18 18 Si 1.86799 * 120.00236 * 170.34294 * 16 14 13 19 19 H 1.48496 * 109.47105 * 59.99776 * 18 16 14 20 20 H 1.48496 * 109.47112 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46846 * 299.99743 * 18 16 14 22 22 H 1.08999 * 109.46705 * 89.97596 * 1 2 3 23 23 H 1.08995 * 109.47115 * 209.97740 * 1 2 3 24 24 H 1.08994 * 109.46872 * 329.98456 * 1 2 3 25 25 H 1.08999 * 109.47224 * 162.03004 * 5 4 3 26 26 H 1.08995 * 109.47265 * 179.97438 * 6 5 4 27 27 H 1.09000 * 109.46972 * 59.99427 * 6 5 4 28 28 H 1.09004 * 109.47134 * 299.99996 * 6 5 4 29 29 H 1.09005 * 109.47521 * 179.97438 * 7 5 4 30 30 H 1.09001 * 109.46916 * 299.99663 * 7 5 4 31 31 H 1.08999 * 109.47502 * 59.99580 * 7 5 4 32 32 H 1.07997 * 120.08193 * 180.26137 * 10 9 8 33 33 H 1.08000 * 120.02605 * 179.97438 * 11 10 9 34 34 H 1.08004 * 119.96547 * 180.02562 * 12 11 10 35 35 H 0.96996 * 119.99643 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2944 1.0742 0.0000 4 6 3.5526 0.7074 -0.0006 5 6 4.7332 1.6440 -0.0013 6 6 4.4674 2.8005 0.9645 7 6 4.9452 2.1964 -1.4122 8 7 3.6260 -0.6468 -0.0068 9 6 2.3276 -1.1198 -0.0005 10 6 2.0783 -2.4981 -0.0014 11 6 3.1376 -3.3897 -0.0026 12 6 4.4405 -2.9164 -0.0034 13 6 4.6864 -1.5378 -0.0025 14 6 5.9955 -1.0631 -0.0038 15 1 6.2447 -0.1673 -0.5532 16 6 6.9897 -1.7478 0.7078 17 7 6.6610 -2.7170 1.5223 18 14 8.7845 -1.2765 0.4931 19 1 8.9741 0.1425 0.8873 20 1 9.6303 -2.1452 1.3505 21 1 9.1756 -1.4520 -0.9286 22 1 -0.3633 0.0004 -1.0277 23 1 -0.3633 -0.8901 0.5135 24 1 -0.3633 0.8898 0.5141 25 1 5.6256 1.1041 0.3154 26 1 5.3215 3.4777 0.9643 27 1 4.3163 2.4070 1.9697 28 1 3.5750 3.3405 0.6479 29 1 5.7988 2.8742 -1.4127 30 1 5.1346 1.3725 -2.1003 31 1 4.0528 2.7363 -1.7289 32 1 1.0624 -2.8644 -0.0007 33 1 2.9489 -4.4531 -0.0028 34 1 5.2670 -3.6117 -0.0047 35 1 7.3491 -3.1907 2.0151 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215678649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:08 Heat of formation + Delta-G solvation = 37.100595 kcal Electronic energy + Delta-G solvation = -17830.343490 eV Core-core repulsion = 15213.583903 eV Total energy + Delta-G solvation = -2616.759587 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.11453 -38.09831 -36.64455 -35.21428 -33.88978 -31.14762 -31.00519 -28.01288 -27.86197 -26.52281 -23.98393 -23.33243 -21.83258 -20.66771 -19.02051 -17.81376 -17.37060 -16.50183 -16.29701 -15.98272 -15.54951 -15.02746 -14.85233 -14.08550 -13.92304 -13.86689 -13.55022 -13.35993 -13.07372 -12.98169 -12.88926 -12.49417 -12.35677 -12.23648 -12.16379 -11.84167 -11.81347 -11.52942 -11.20296 -10.84719 -10.77078 -9.64933 -8.90043 -8.07747 -6.49411 0.40937 0.87795 1.36880 1.44828 1.50328 2.06897 2.26028 2.30468 2.61892 3.26729 3.65280 4.04124 4.17720 4.28748 4.33396 4.38811 4.57087 4.75793 4.80156 4.82601 4.85367 4.93566 4.95163 4.98029 5.00525 5.07797 5.12394 5.24007 5.37983 5.42131 5.48951 5.72959 5.86154 5.95787 6.16281 6.25731 6.38040 6.55141 6.95290 7.37484 8.10187 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.020522 B = 0.010627 C = 0.007503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.034263 B = 2634.152060 C = 3730.772285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 C -0.100 4.100 3 N -0.468 5.468 4 C 0.125 3.875 5 C -0.018 4.018 6 C -0.122 4.122 7 C -0.127 4.127 8 N -0.389 5.389 9 C 0.030 3.970 10 C -0.251 4.251 11 C -0.059 4.059 12 C -0.268 4.268 13 C 0.256 3.744 14 C -0.479 4.479 15 H 0.103 0.897 16 C 0.043 3.957 17 N -0.803 5.803 18 Si 0.992 3.008 19 H -0.251 1.251 20 H -0.264 1.264 21 H -0.253 1.253 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.034 0.966 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.122 0.878 35 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.230 3.403 -1.647 3.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.233 4.233 3 N -0.183 5.183 4 C -0.128 4.128 5 C -0.038 4.038 6 C -0.180 4.180 7 C -0.185 4.185 8 N -0.063 5.063 9 C -0.081 4.081 10 C -0.272 4.272 11 C -0.080 4.080 12 C -0.289 4.289 13 C 0.155 3.845 14 C -0.509 4.509 15 H 0.121 0.879 16 C -0.176 4.176 17 N -0.426 5.426 18 Si 0.810 3.190 19 H -0.174 1.174 20 H -0.188 1.188 21 H -0.177 1.177 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.156 0.844 33 H 0.151 0.849 34 H 0.139 0.861 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.095 4.146 -1.474 4.534 hybrid contribution 0.751 -1.198 0.130 1.420 sum 1.846 2.948 -1.344 3.729 Atomic orbital electron populations 1.19748 0.85580 1.02218 1.01718 1.21340 0.97180 0.86566 1.18193 1.69449 1.00004 1.30978 1.17890 1.23327 0.94920 0.80398 1.14151 1.19881 0.92131 0.93658 0.98157 1.21610 1.02505 0.96665 0.97173 1.21714 1.02397 1.00305 0.94132 1.43902 1.07118 1.07411 1.47839 1.19888 0.84333 0.95860 1.07989 1.20186 0.99472 0.88651 1.18868 1.21171 0.92251 0.99342 0.95231 1.20730 0.96554 0.92618 1.19021 1.18420 0.86282 0.88421 0.91404 1.19462 0.91048 1.12181 1.28225 0.87905 1.26830 1.06114 0.93030 0.91676 1.69822 1.38728 1.16854 1.17206 0.85076 0.73720 0.80088 0.80113 1.17447 1.18786 1.17732 0.91715 0.91046 0.91553 0.88996 0.89647 0.94693 0.92327 0.89284 0.94612 0.92763 0.84396 0.84929 0.86064 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.23 10.44 71.24 0.74 -0.49 16 2 C -0.10 -4.67 7.23 42.50 0.31 -4.36 16 3 N -0.47 -22.50 10.84 -173.16 -1.88 -24.38 16 4 C 0.13 6.04 6.63 137.78 0.91 6.96 16 5 C -0.02 -0.73 2.64 -11.54 -0.03 -0.76 16 6 C -0.12 -4.13 9.02 71.98 0.65 -3.48 16 7 C -0.13 -4.31 9.10 71.98 0.65 -3.66 16 8 N -0.39 -20.30 3.01 -329.75 -0.99 -21.30 16 9 C 0.03 1.49 6.74 38.73 0.26 1.75 16 10 C -0.25 -11.46 10.13 22.76 0.23 -11.23 16 11 C -0.06 -2.67 10.07 22.41 0.23 -2.44 16 12 C -0.27 -13.59 8.58 22.80 0.20 -13.40 16 13 C 0.26 13.49 6.34 38.77 0.25 13.73 16 14 C -0.48 -23.38 7.36 22.97 0.17 -23.21 16 15 H 0.10 4.75 5.71 -2.91 -0.02 4.73 16 16 C 0.04 1.95 5.21 85.31 0.44 2.40 16 17 N -0.80 -38.13 11.25 21.86 0.25 -37.89 16 18 Si 0.99 33.46 29.57 68.60 2.03 35.49 16 19 H -0.25 -8.09 7.11 99.48 0.71 -7.39 16 20 H -0.26 -8.44 7.11 99.48 0.71 -7.73 16 21 H -0.25 -8.31 7.11 99.48 0.71 -7.61 16 22 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 24 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.09 3.87 4.92 -2.39 -0.01 3.86 16 26 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 2.00 8.04 -2.39 -0.02 1.98 16 29 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 30 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.14 5.34 8.06 -2.91 -0.02 5.31 16 33 H 0.13 5.04 8.06 -2.91 -0.02 5.01 16 34 H 0.12 6.20 6.68 -2.91 -0.02 6.18 16 35 H 0.30 12.69 8.29 -92.71 -0.77 11.92 16 Total: -1.00 -60.14 290.35 5.50 -54.64 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 1.08 Total: 31.62 kcal Atomic # 6 Polarization: -43.20 SS G_CDS: 5.01 Total: -38.19 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -2.62 Total: -83.56 kcal Atomic # 14 Polarization: 33.46 SS G_CDS: 2.03 Total: 35.49 kcal Total: -60.14 5.50 -54.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215678649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.742 kcal (2) G-P(sol) polarization free energy of solvation -60.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds