Wall clock time and date at job start Mon Mar 30 2020 05:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47229 * 2 1 4 4 C 1.50699 * 109.47147 * 239.99767 * 2 1 3 5 5 H 1.08000 * 120.00267 * 239.99879 * 4 2 1 6 6 C 1.37881 * 119.99847 * 59.99929 * 4 2 1 7 7 N 1.31515 * 120.00091 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00115 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46812 * 59.99752 * 8 6 4 10 10 H 1.48491 * 109.47165 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46672 * 300.00354 * 8 6 4 12 12 S 1.81400 * 109.47251 * 120.00068 * 2 1 3 13 13 O 1.42103 * 109.46888 * 188.61540 * 12 2 1 14 14 C 1.81399 * 102.99767 * 304.99897 * 12 2 1 15 15 H 1.09001 * 109.47190 * 64.99856 * 14 12 2 16 16 C 1.53005 * 109.47445 * 304.99812 * 14 12 2 17 17 C 1.52996 * 109.47245 * 179.97438 * 16 14 12 18 18 C 1.52997 * 109.46975 * 60.00405 * 17 16 14 19 19 C 1.52997 * 109.47232 * 299.99763 * 18 17 16 20 20 H 1.09000 * 109.47611 * 180.02562 * 19 18 17 21 21 C 1.53002 * 109.47143 * 300.00043 * 19 18 17 22 22 C 1.52996 * 109.47131 * 59.99874 * 19 18 17 23 23 H 1.08998 * 109.47537 * 299.99902 * 1 2 3 24 24 H 1.09000 * 109.47264 * 59.99957 * 1 2 3 25 25 H 1.08998 * 109.47229 * 179.97438 * 1 2 3 26 26 H 0.97000 * 120.00259 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.46962 * 300.00183 * 16 14 12 28 28 H 1.09004 * 109.46832 * 60.00020 * 16 14 12 29 29 H 1.09000 * 109.46870 * 180.02562 * 17 16 14 30 30 H 1.09001 * 109.47372 * 300.00032 * 17 16 14 31 31 H 1.09001 * 109.47375 * 59.99630 * 18 17 16 32 32 H 1.09002 * 109.47045 * 179.97438 * 18 17 16 33 33 H 1.09004 * 109.46930 * 59.99935 * 21 19 18 34 34 H 1.09000 * 109.47312 * 179.97438 * 21 19 18 35 35 H 1.09002 * 109.47067 * 300.00018 * 21 19 18 36 36 H 1.09000 * 109.47054 * 180.02562 * 22 19 18 37 37 H 1.09001 * 109.46997 * 60.00426 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6991 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8280 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1190 -4.0077 12 16 2.1346 -0.8551 1.4811 13 8 3.5414 -0.6838 1.5857 14 6 1.3148 0.0375 2.8308 15 1 0.2374 -0.1141 2.7650 16 6 1.6276 1.5310 2.7186 17 6 0.9356 2.2839 3.8567 18 6 1.4432 1.7561 5.2000 19 6 1.1305 0.2626 5.3124 20 1 1.4918 -0.1133 6.2696 21 6 -0.3817 0.0498 5.2194 22 6 1.8224 -0.4903 4.1743 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.7094 1.1618 -3.4844 27 1 2.7050 1.6825 2.7845 28 1 1.2655 1.9071 1.7617 29 1 1.1580 3.3479 3.7764 30 1 -0.1418 2.1323 3.7904 31 1 2.5206 1.9077 5.2663 32 1 0.9506 2.2928 6.0109 33 1 -0.7434 0.4258 4.2623 34 1 -0.6045 -1.0142 5.2989 35 1 -0.8747 0.5862 6.0302 36 1 1.5993 -1.5542 4.2540 37 1 2.8998 -0.3387 4.2406 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218014795.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:20 Heat of formation + Delta-G solvation = -71.470273 kcal Electronic energy + Delta-G solvation = -16634.442491 eV Core-core repulsion = 14116.126117 eV Total energy + Delta-G solvation = -2518.316373 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.71186 -34.54228 -34.02682 -31.86595 -30.64734 -30.15177 -26.63035 -25.28373 -22.50467 -22.04721 -21.23767 -18.40806 -16.99015 -16.17380 -15.52033 -15.12163 -14.51537 -14.27174 -13.75503 -13.47665 -13.40963 -13.01364 -12.63326 -12.35491 -12.08509 -11.68079 -11.40783 -11.35332 -11.08493 -10.91254 -10.88875 -10.76038 -10.67514 -10.43466 -10.30026 -10.13615 -9.97303 -9.79812 -9.21162 -8.62191 -8.40093 -7.02731 -6.10440 -4.21989 2.62681 3.28221 3.32150 3.36746 3.84134 4.35835 4.76804 4.87606 4.92896 5.04670 5.20970 5.39405 5.45765 5.52637 5.59039 5.71605 5.80548 5.89447 5.96385 5.97519 6.10510 6.18984 6.32256 6.37861 6.39981 6.50194 6.55316 6.61434 6.71734 6.78668 6.85162 7.37809 7.67391 7.83758 8.15055 8.79001 9.42944 10.94718 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.042356 B = 0.006531 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.904398 B = 4286.205113 C = 4499.892222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.218 4.218 3 H 0.046 0.954 4 C -0.507 4.507 5 H 0.062 0.938 6 C 0.072 3.928 7 N -0.883 5.883 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.276 1.276 12 S 1.186 4.814 13 O -0.870 6.870 14 C -0.411 4.411 15 H 0.117 0.883 16 C -0.111 4.111 17 C -0.115 4.115 18 C -0.113 4.113 19 C -0.086 4.086 20 H 0.064 0.936 21 C -0.150 4.150 22 C -0.087 4.087 23 H 0.017 0.983 24 H 0.090 0.910 25 H 0.042 0.958 26 H 0.263 0.737 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.076 -1.996 12.688 13.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.340 4.340 3 H 0.064 0.936 4 C -0.547 4.547 5 H 0.080 0.920 6 C -0.132 4.132 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.201 1.201 12 S 1.390 4.610 13 O -0.865 6.865 14 C -0.526 4.526 15 H 0.134 0.866 16 C -0.149 4.149 17 C -0.153 4.153 18 C -0.150 4.150 19 C -0.106 4.106 20 H 0.082 0.918 21 C -0.207 4.207 22 C -0.125 4.125 23 H 0.036 0.964 24 H 0.108 0.892 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.488 -2.654 12.659 13.691 hybrid contribution 0.836 1.950 -0.948 2.324 sum -3.652 -0.703 11.711 12.287 Atomic orbital electron populations 1.21563 0.95061 1.00281 1.01311 1.24599 0.99540 1.04208 1.05670 0.93567 1.20432 1.32168 1.12847 0.89216 0.92009 1.24913 0.94578 0.94792 0.98938 1.69866 1.35957 1.22491 1.23756 0.86563 0.79451 0.79869 0.81694 1.19691 1.21117 1.20095 1.69589 0.89902 1.13671 0.87798 1.92987 1.25386 1.83573 1.84574 1.27684 1.10189 1.04011 1.10758 0.86550 1.21554 1.00502 0.93765 0.99073 1.21528 1.00406 0.98703 0.94683 1.21539 1.00675 0.95608 0.97210 1.21044 0.95982 0.95464 0.98061 0.91779 1.21934 0.95438 1.01302 1.02007 1.21190 0.99863 0.99051 0.92444 0.96365 0.89156 0.93919 0.92706 0.92342 0.91068 0.92782 0.91689 0.92467 0.92621 0.91642 0.92728 0.93408 0.91414 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 8.70 37.15 0.32 -2.29 16 2 C -0.22 -5.24 2.08 -27.89 -0.06 -5.30 16 3 H 0.05 1.25 7.19 -51.92 -0.37 0.88 16 4 C -0.51 -13.73 8.58 -34.44 -0.30 -14.02 16 5 H 0.06 1.65 7.71 -52.49 -0.40 1.25 16 6 C 0.07 1.95 5.30 -17.82 -0.09 1.86 16 7 N -0.88 -24.68 11.32 55.43 0.63 -24.05 16 8 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 S 1.19 23.60 12.10 -107.50 -1.30 22.30 16 13 O -0.87 -22.29 18.13 -35.23 -0.64 -22.93 16 14 C -0.41 -6.57 1.69 -26.73 -0.05 -6.62 16 15 H 0.12 1.64 5.47 -51.92 -0.28 1.36 16 16 C -0.11 -1.91 4.94 -26.73 -0.13 -2.04 16 17 C -0.11 -1.60 5.65 -26.73 -0.15 -1.75 16 18 C -0.11 -1.42 5.45 -26.73 -0.15 -1.57 16 19 C -0.09 -1.04 3.19 -90.62 -0.29 -1.33 16 20 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 21 C -0.15 -1.60 8.50 37.16 0.32 -1.29 16 22 C -0.09 -1.24 4.73 -26.73 -0.13 -1.36 16 23 H 0.02 0.32 6.29 -51.93 -0.33 -0.01 16 24 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.07 1.34 6.29 -51.93 -0.33 1.01 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.85 6.43 -51.93 -0.33 0.52 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.75 4.81 -51.93 -0.25 0.50 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 291.21 15.07 4.39 4.39 Total: -1.00 -32.06 291.21 -8.62 -40.68 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.98 Total: -0.67 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: -0.70 Total: -35.71 kcal Atomic # 7 Polarization: -24.68 SS G_CDS: 0.63 Total: -24.05 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.64 Total: -22.93 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 23.60 SS G_CDS: -1.30 Total: 22.30 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.06 -8.62 -40.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218014795.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.789 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds