Wall clock time and date at job start Mon Mar 30 2020 05:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47229 * 2 1 4 4 C 1.50699 * 109.47147 * 239.99767 * 2 1 3 5 5 H 1.08000 * 120.00267 * 239.99879 * 4 2 1 6 6 C 1.37881 * 119.99847 * 59.99929 * 4 2 1 7 7 N 1.31515 * 120.00091 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00115 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46812 * 59.99752 * 8 6 4 10 10 H 1.48491 * 109.47165 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46672 * 300.00354 * 8 6 4 12 12 S 1.81400 * 109.47251 * 120.00068 * 2 1 3 13 13 O 1.42103 * 109.46888 * 188.61540 * 12 2 1 14 14 C 1.81399 * 102.99767 * 304.99897 * 12 2 1 15 15 H 1.09001 * 109.47190 * 64.99856 * 14 12 2 16 16 C 1.53005 * 109.47445 * 304.99812 * 14 12 2 17 17 C 1.52996 * 109.47245 * 179.97438 * 16 14 12 18 18 C 1.52997 * 109.46975 * 60.00405 * 17 16 14 19 19 C 1.52997 * 109.47232 * 299.99763 * 18 17 16 20 20 H 1.09000 * 109.47611 * 180.02562 * 19 18 17 21 21 C 1.53002 * 109.47143 * 300.00043 * 19 18 17 22 22 C 1.52996 * 109.47131 * 59.99874 * 19 18 17 23 23 H 1.08998 * 109.47537 * 299.99902 * 1 2 3 24 24 H 1.09000 * 109.47264 * 59.99957 * 1 2 3 25 25 H 1.08998 * 109.47229 * 179.97438 * 1 2 3 26 26 H 0.97000 * 120.00259 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.46962 * 300.00183 * 16 14 12 28 28 H 1.09004 * 109.46832 * 60.00020 * 16 14 12 29 29 H 1.09000 * 109.46870 * 180.02562 * 17 16 14 30 30 H 1.09001 * 109.47372 * 300.00032 * 17 16 14 31 31 H 1.09001 * 109.47375 * 59.99630 * 18 17 16 32 32 H 1.09002 * 109.47045 * 179.97438 * 18 17 16 33 33 H 1.09004 * 109.46930 * 59.99935 * 21 19 18 34 34 H 1.09000 * 109.47312 * 179.97438 * 21 19 18 35 35 H 1.09002 * 109.47067 * 300.00018 * 21 19 18 36 36 H 1.09000 * 109.47054 * 180.02562 * 22 19 18 37 37 H 1.09001 * 109.46997 * 60.00426 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6991 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8280 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1190 -4.0077 12 16 2.1346 -0.8551 1.4811 13 8 3.5414 -0.6838 1.5857 14 6 1.3148 0.0375 2.8308 15 1 0.2374 -0.1141 2.7650 16 6 1.6276 1.5310 2.7186 17 6 0.9356 2.2839 3.8567 18 6 1.4432 1.7561 5.2000 19 6 1.1305 0.2626 5.3124 20 1 1.4918 -0.1133 6.2696 21 6 -0.3817 0.0498 5.2194 22 6 1.8224 -0.4903 4.1743 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.7094 1.1618 -3.4844 27 1 2.7050 1.6825 2.7845 28 1 1.2655 1.9071 1.7617 29 1 1.1580 3.3479 3.7764 30 1 -0.1418 2.1323 3.7904 31 1 2.5206 1.9077 5.2663 32 1 0.9506 2.2928 6.0109 33 1 -0.7434 0.4258 4.2623 34 1 -0.6045 -1.0142 5.2989 35 1 -0.8747 0.5862 6.0302 36 1 1.5993 -1.5542 4.2540 37 1 2.8998 -0.3387 4.2406 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218014795.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:19 Heat of formation + Delta-G solvation = -92.097855 kcal Electronic energy + Delta-G solvation = -16635.336970 eV Core-core repulsion = 14116.126117 eV Total energy + Delta-G solvation = -2519.210852 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.84733 -36.45013 -35.98446 -33.15770 -32.10340 -31.71427 -27.61284 -27.22571 -23.79365 -23.43312 -22.87723 -19.51240 -18.76300 -18.03762 -17.00386 -16.80389 -15.94008 -15.55066 -15.32927 -15.05034 -14.71117 -14.46220 -14.15327 -13.72302 -13.38077 -13.29516 -13.01492 -12.81025 -12.63764 -12.48213 -12.36063 -12.20281 -12.19297 -11.92576 -11.85509 -11.57499 -11.20666 -11.09255 -10.90473 -10.61365 -10.16350 -8.78853 -8.16057 -6.35399 0.99870 1.40317 1.42823 1.50282 2.16686 2.39643 3.06749 3.21871 3.71688 3.73826 3.99377 4.24448 4.29661 4.40583 4.45232 4.59293 4.64658 4.77865 4.83938 4.92744 4.98559 5.02083 5.05479 5.09937 5.10287 5.18937 5.22718 5.36118 5.41947 5.46059 5.49003 5.67371 5.69027 5.92647 6.22398 6.73613 7.32715 8.87305 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.042356 B = 0.006531 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.904398 B = 4286.205113 C = 4499.892222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.231 4.231 3 H -0.001 1.001 4 C -0.532 4.532 5 H 0.057 0.943 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.253 1.253 10 H -0.280 1.280 11 H -0.283 1.283 12 S 1.234 4.766 13 O -0.933 6.933 14 C -0.395 4.395 15 H 0.150 0.850 16 C -0.113 4.113 17 C -0.110 4.110 18 C -0.114 4.114 19 C -0.082 4.082 20 H 0.083 0.917 21 C -0.149 4.149 22 C -0.091 4.091 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.264 0.736 27 H 0.024 0.976 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.927 -3.087 14.546 16.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.351 4.351 3 H 0.018 0.982 4 C -0.571 4.571 5 H 0.075 0.925 6 C -0.178 4.178 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.177 1.177 10 H -0.205 1.205 11 H -0.209 1.209 12 S 1.441 4.559 13 O -0.928 6.928 14 C -0.513 4.513 15 H 0.168 0.832 16 C -0.152 4.152 17 C -0.149 4.149 18 C -0.151 4.151 19 C -0.101 4.101 20 H 0.101 0.899 21 C -0.206 4.206 22 C -0.130 4.130 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.043 0.957 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.330 -3.763 14.478 16.243 hybrid contribution 1.410 2.360 -1.404 3.087 sum -4.920 -1.403 13.074 14.040 Atomic orbital electron populations 1.21436 0.92875 1.01787 1.01249 1.24704 1.01501 1.01485 1.07435 0.98230 1.20843 1.32264 1.13090 0.90932 0.92469 1.25707 0.94775 0.95526 1.01805 1.70002 1.36809 1.23560 1.24287 0.85670 0.78249 0.79841 0.78380 1.17664 1.20469 1.20918 1.68642 0.87574 1.12970 0.86704 1.92877 1.29252 1.85092 1.85621 1.27539 1.11326 1.02638 1.09789 0.83222 1.21528 0.98776 0.95183 0.99664 1.21521 1.01007 0.98364 0.93979 1.21577 1.00049 0.96595 0.96919 1.21054 0.97078 0.94381 0.97612 0.89869 1.21940 0.93813 1.02628 1.02266 1.21305 0.98555 1.01196 0.91921 0.93224 0.92431 0.91464 0.92712 0.95661 0.93381 0.92623 0.89842 0.93923 0.90091 0.92313 0.91230 0.91852 0.88641 0.94624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.81 8.70 71.98 0.63 -4.18 16 2 C -0.23 -11.38 2.08 29.85 0.06 -11.32 16 3 H 0.00 -0.04 7.19 -2.39 -0.02 -0.05 16 4 C -0.53 -29.54 8.58 25.60 0.22 -29.32 16 5 H 0.06 3.13 7.71 -2.91 -0.02 3.11 16 6 C 0.02 1.28 5.30 84.66 0.45 1.72 16 7 N -0.91 -52.07 11.32 21.45 0.24 -51.82 16 8 Si 0.95 43.47 29.54 68.60 2.03 45.49 16 9 H -0.25 -10.66 7.11 99.48 0.71 -9.96 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 S 1.23 49.43 12.10 -56.49 -0.68 48.74 16 13 O -0.93 -49.49 18.13 -148.98 -2.70 -52.19 16 14 C -0.39 -12.01 1.69 30.60 0.05 -11.95 16 15 H 0.15 3.66 5.47 -2.39 -0.01 3.65 16 16 C -0.11 -3.92 4.94 30.59 0.15 -3.77 16 17 C -0.11 -2.87 5.65 30.59 0.17 -2.70 16 18 C -0.11 -2.56 5.45 30.59 0.17 -2.39 16 19 C -0.08 -1.66 3.19 -10.79 -0.03 -1.69 16 20 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 21 C -0.15 -2.45 8.50 71.98 0.61 -1.84 16 22 C -0.09 -2.37 4.73 30.59 0.14 -2.23 16 23 H 0.05 1.71 6.29 -2.39 -0.02 1.70 16 24 H 0.06 2.84 6.07 -2.39 -0.01 2.82 16 25 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 27 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.05 1.86 6.29 -2.38 -0.01 1.85 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.08 1.90 6.43 -2.39 -0.02 1.88 16 31 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.04 4.81 -2.38 -0.01 1.03 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -72.87 291.21 2.54 -70.33 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 1.03 Total: 9.12 kcal Atomic # 6 Polarization: -72.29 SS G_CDS: 2.62 Total: -69.67 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 0.24 Total: -51.82 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -2.70 Total: -52.19 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 49.43 SS G_CDS: -0.68 Total: 48.74 kcal Total: -72.87 2.54 -70.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218014795.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.771 kcal (2) G-P(sol) polarization free energy of solvation -72.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds