Wall clock time and date at job start Mon Mar 30 2020 05:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 S 1.81401 * 109.47240 * 119.99460 * 2 1 3 13 13 O 1.42103 * 109.46706 * 61.39008 * 12 2 1 14 14 C 1.81403 * 103.00137 * 305.00344 * 12 2 1 15 15 H 1.08999 * 109.46612 * 64.99726 * 14 12 2 16 16 C 1.52990 * 109.47073 * 304.99929 * 14 12 2 17 17 C 1.53001 * 109.47284 * 179.97438 * 16 14 12 18 18 C 1.53005 * 109.46901 * 60.00171 * 17 16 14 19 19 C 1.53003 * 109.46830 * 300.00071 * 18 17 16 20 20 H 1.08994 * 109.47214 * 180.02562 * 19 18 17 21 21 C 1.53006 * 109.47198 * 300.00112 * 19 18 17 22 22 C 1.52995 * 109.46887 * 184.99606 * 14 12 2 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.08996 * 109.47481 * 299.99887 * 16 14 12 28 28 H 1.09004 * 109.47408 * 59.99911 * 16 14 12 29 29 H 1.09000 * 109.47437 * 300.00243 * 17 16 14 30 30 H 1.09001 * 109.47434 * 179.97438 * 17 16 14 31 31 H 1.08993 * 109.47310 * 180.02562 * 18 17 16 32 32 H 1.09000 * 109.47016 * 59.99815 * 18 17 16 33 33 H 1.09001 * 109.47183 * 180.02562 * 21 19 18 34 34 H 1.09001 * 109.46616 * 300.00321 * 21 19 18 35 35 H 1.08994 * 109.47124 * 59.99839 * 21 19 18 36 36 H 1.08995 * 109.47445 * 299.99686 * 22 14 12 37 37 H 1.08999 * 109.47397 * 60.00600 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 16 2.1347 -0.8550 1.4812 13 8 1.6877 -2.2038 1.4651 14 6 1.3148 0.0376 2.8309 15 1 0.2375 -0.1141 2.7650 16 6 1.6275 1.5310 2.7186 17 6 0.9355 2.2840 3.8566 18 6 1.4432 1.7563 5.2001 19 6 1.1305 0.2628 5.3124 20 1 1.4917 -0.1131 6.2696 21 6 -0.3818 0.0499 5.2193 22 6 1.8230 -0.4903 4.1740 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7088 1.1611 -3.4845 27 1 2.7048 1.6827 2.7845 28 1 1.2655 1.9071 1.7617 29 1 -0.1419 2.1323 3.7904 30 1 1.1586 3.3479 3.7769 31 1 0.9499 2.2923 6.0109 32 1 2.5205 1.9079 5.2663 33 1 -0.6046 -1.0141 5.2998 34 1 -0.8747 0.5863 6.0301 35 1 -0.7434 0.4258 4.2623 36 1 1.6002 -1.5542 4.2541 37 1 2.9003 -0.3386 4.2400 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218014881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:22 Heat of formation + Delta-G solvation = -71.196873 kcal Electronic energy + Delta-G solvation = -16629.503745 eV Core-core repulsion = 14111.199227 eV Total energy + Delta-G solvation = -2518.304518 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.70860 -34.54098 -34.01699 -31.83567 -30.64160 -30.16410 -26.63261 -25.30794 -22.47127 -22.04734 -21.20681 -18.48048 -16.91951 -16.22290 -15.52698 -15.04632 -14.59191 -14.25599 -13.81557 -13.48384 -13.29635 -13.05626 -12.59765 -12.37383 -11.87607 -11.60692 -11.48740 -11.30411 -11.14270 -10.95954 -10.89034 -10.80543 -10.73524 -10.51939 -10.28323 -10.19525 -9.87110 -9.78746 -9.17769 -8.63753 -8.35014 -7.04709 -6.08770 -4.20534 2.62348 3.28955 3.32640 3.37826 3.85480 4.36575 4.77997 4.84096 4.98214 5.02707 5.21165 5.40681 5.46014 5.50949 5.57963 5.72496 5.81001 5.89093 5.96839 5.99396 6.10365 6.17489 6.31786 6.35057 6.39380 6.50738 6.56405 6.60576 6.73993 6.77953 6.83375 7.39209 7.69126 7.82121 8.16411 8.80571 9.44349 10.95415 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.042135 B = 0.006576 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.366648 B = 4256.569479 C = 4531.934621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.220 4.220 3 H 0.080 0.920 4 C -0.508 4.508 5 H 0.061 0.939 6 C 0.072 3.928 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.286 1.286 10 H -0.272 1.272 11 H -0.276 1.276 12 S 1.187 4.813 13 O -0.867 6.867 14 C -0.414 4.414 15 H 0.086 0.914 16 C -0.092 4.092 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.086 4.086 20 H 0.064 0.936 21 C -0.151 4.151 22 C -0.085 4.085 23 H 0.090 0.910 24 H 0.029 0.971 25 H 0.013 0.987 26 H 0.263 0.737 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.932 4.510 13.224 14.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.342 4.342 3 H 0.098 0.902 4 C -0.547 4.547 5 H 0.080 0.920 6 C -0.132 4.132 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.211 1.211 10 H -0.197 1.197 11 H -0.201 1.201 12 S 1.391 4.609 13 O -0.862 6.862 14 C -0.529 4.529 15 H 0.105 0.895 16 C -0.131 4.131 17 C -0.156 4.156 18 C -0.149 4.149 19 C -0.106 4.106 20 H 0.083 0.917 21 C -0.208 4.208 22 C -0.123 4.123 23 H 0.108 0.892 24 H 0.048 0.952 25 H 0.032 0.968 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.470 3.814 13.183 14.155 hybrid contribution -2.196 -0.514 -1.115 2.516 sum 1.273 3.300 12.068 12.575 Atomic orbital electron populations 1.21827 0.97165 0.99739 1.01175 1.24678 0.98949 1.04539 1.06003 0.90243 1.20485 1.32463 1.12409 0.89331 0.92038 1.24912 0.94604 0.94782 0.98921 1.69866 1.35887 1.22653 1.23723 0.86576 0.79459 0.79881 0.81733 1.21121 1.19731 1.20138 1.69525 1.17305 0.85601 0.88515 1.92998 1.82060 1.26063 1.85115 1.27566 1.09507 1.05029 1.10776 0.89550 1.21221 1.00935 0.91865 0.99041 1.21556 1.00437 0.98865 0.94731 1.21540 1.00851 0.95208 0.97270 1.21062 0.95738 0.95712 0.98057 0.91720 1.21937 0.95890 1.01135 1.01866 1.21178 0.99810 0.99016 0.92342 0.89153 0.95190 0.96777 0.92740 0.90982 0.90706 0.92177 0.92274 0.92748 0.91903 0.93176 0.93312 0.91900 0.92156 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.70 37.16 0.32 -3.14 16 2 C -0.22 -5.25 2.08 -27.89 -0.06 -5.31 16 3 H 0.08 1.84 7.19 -51.92 -0.37 1.47 16 4 C -0.51 -13.87 8.57 -34.44 -0.30 -14.17 16 5 H 0.06 1.69 7.71 -52.49 -0.40 1.29 16 6 C 0.07 1.96 5.30 -17.82 -0.09 1.87 16 7 N -0.88 -24.70 11.32 55.43 0.63 -24.08 16 8 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 9 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 S 1.19 23.53 12.10 -107.50 -1.30 22.23 16 13 O -0.87 -22.41 18.12 -35.23 -0.64 -23.04 16 14 C -0.41 -6.64 1.69 -26.74 -0.05 -6.68 16 15 H 0.09 1.55 5.47 -51.92 -0.28 1.27 16 16 C -0.09 -1.28 4.94 -26.74 -0.13 -1.41 16 17 C -0.12 -1.42 5.65 -26.73 -0.15 -1.57 16 18 C -0.11 -1.20 5.45 -26.73 -0.15 -1.35 16 19 C -0.09 -1.03 3.20 -90.59 -0.29 -1.32 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 21 C -0.15 -1.90 8.50 37.16 0.32 -1.58 16 22 C -0.09 -1.18 4.74 -26.71 -0.13 -1.30 16 23 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.01 0.29 6.29 -51.93 -0.33 -0.04 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.15 6.29 -51.93 -0.33 0.83 16 29 H 0.06 0.77 6.43 -51.93 -0.33 0.44 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.87 4.81 -51.93 -0.25 0.62 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 291.20 15.07 4.39 4.39 Total: -1.00 -32.49 291.20 -8.62 -41.10 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -5.98 Total: -0.87 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: -0.70 Total: -35.97 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 0.63 Total: -24.08 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.64 Total: -23.04 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 23.53 SS G_CDS: -1.30 Total: 22.23 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.49 -8.62 -41.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218014881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.092 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds