Wall clock time and date at job start Mon Mar 30 2020 05:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 S 1.81401 * 109.47240 * 119.99460 * 2 1 3 13 13 O 1.42103 * 109.46706 * 61.39008 * 12 2 1 14 14 C 1.81403 * 103.00137 * 305.00344 * 12 2 1 15 15 H 1.08999 * 109.46612 * 64.99726 * 14 12 2 16 16 C 1.52990 * 109.47073 * 304.99929 * 14 12 2 17 17 C 1.53001 * 109.47284 * 179.97438 * 16 14 12 18 18 C 1.53005 * 109.46901 * 60.00171 * 17 16 14 19 19 C 1.53003 * 109.46830 * 300.00071 * 18 17 16 20 20 H 1.08994 * 109.47214 * 180.02562 * 19 18 17 21 21 C 1.53006 * 109.47198 * 300.00112 * 19 18 17 22 22 C 1.52995 * 109.46887 * 184.99606 * 14 12 2 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.08996 * 109.47481 * 299.99887 * 16 14 12 28 28 H 1.09004 * 109.47408 * 59.99911 * 16 14 12 29 29 H 1.09000 * 109.47437 * 300.00243 * 17 16 14 30 30 H 1.09001 * 109.47434 * 179.97438 * 17 16 14 31 31 H 1.08993 * 109.47310 * 180.02562 * 18 17 16 32 32 H 1.09000 * 109.47016 * 59.99815 * 18 17 16 33 33 H 1.09001 * 109.47183 * 180.02562 * 21 19 18 34 34 H 1.09001 * 109.46616 * 300.00321 * 21 19 18 35 35 H 1.08994 * 109.47124 * 59.99839 * 21 19 18 36 36 H 1.08995 * 109.47445 * 299.99686 * 22 14 12 37 37 H 1.08999 * 109.47397 * 60.00600 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 16 2.1347 -0.8550 1.4812 13 8 1.6877 -2.2038 1.4651 14 6 1.3148 0.0376 2.8309 15 1 0.2375 -0.1141 2.7650 16 6 1.6275 1.5310 2.7186 17 6 0.9355 2.2840 3.8566 18 6 1.4432 1.7563 5.2001 19 6 1.1305 0.2628 5.3124 20 1 1.4917 -0.1131 6.2696 21 6 -0.3818 0.0499 5.2193 22 6 1.8230 -0.4903 4.1740 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7088 1.1611 -3.4845 27 1 2.7048 1.6827 2.7845 28 1 1.2655 1.9071 1.7617 29 1 -0.1419 2.1323 3.7904 30 1 1.1586 3.3479 3.7769 31 1 0.9499 2.2923 6.0109 32 1 2.5205 1.9079 5.2663 33 1 -0.6046 -1.0141 5.2998 34 1 -0.8747 0.5863 6.0301 35 1 -0.7434 0.4258 4.2623 36 1 1.6002 -1.5542 4.2541 37 1 2.9003 -0.3386 4.2400 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218014881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:22 Heat of formation + Delta-G solvation = -91.912347 kcal Electronic energy + Delta-G solvation = -16630.402036 eV Core-core repulsion = 14111.199227 eV Total energy + Delta-G solvation = -2519.202808 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.75786 -36.45120 -36.02098 -33.10214 -32.11677 -31.63286 -27.68801 -27.33996 -23.71268 -23.40376 -22.79792 -19.52178 -18.65604 -18.09876 -17.04614 -16.72237 -15.98779 -15.41071 -15.37801 -14.92084 -14.64583 -14.58363 -13.98032 -13.67586 -13.48301 -13.29808 -12.93144 -12.91568 -12.75200 -12.64172 -12.41355 -12.29835 -12.16111 -11.94929 -11.84990 -11.48375 -11.22602 -11.00247 -10.82205 -10.60344 -10.11858 -8.80736 -8.16274 -6.35061 1.00790 1.38740 1.41121 1.48738 2.17251 2.38538 3.07275 3.23289 3.78000 3.87371 4.06841 4.29000 4.39329 4.48976 4.55314 4.57899 4.66957 4.72588 4.77838 4.83721 4.86719 4.97895 4.99615 5.12745 5.23543 5.27195 5.30611 5.37407 5.45328 5.50593 5.52968 5.62689 5.68483 5.73464 6.11999 6.72523 7.32332 8.86085 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.042135 B = 0.006576 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.366648 B = 4256.569479 C = 4531.934621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.235 4.235 3 H 0.087 0.913 4 C -0.532 4.532 5 H 0.051 0.949 6 C 0.026 3.974 7 N -0.906 5.906 8 Si 0.951 3.049 9 H -0.277 1.277 10 H -0.256 1.256 11 H -0.285 1.285 12 S 1.236 4.764 13 O -0.931 6.931 14 C -0.395 4.395 15 H 0.065 0.935 16 C -0.095 4.095 17 C -0.116 4.116 18 C -0.107 4.107 19 C -0.083 4.083 20 H 0.087 0.913 21 C -0.154 4.154 22 C -0.090 4.090 23 H 0.066 0.934 24 H -0.002 1.002 25 H 0.040 0.960 26 H 0.265 0.735 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.040 0.960 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.207 5.864 15.005 16.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.355 4.355 3 H 0.105 0.895 4 C -0.571 4.571 5 H 0.069 0.931 6 C -0.176 4.176 7 N -0.544 5.544 8 Si 0.775 3.225 9 H -0.202 1.202 10 H -0.180 1.180 11 H -0.211 1.211 12 S 1.442 4.558 13 O -0.927 6.927 14 C -0.514 4.514 15 H 0.083 0.917 16 C -0.134 4.134 17 C -0.155 4.155 18 C -0.144 4.144 19 C -0.102 4.102 20 H 0.105 0.895 21 C -0.211 4.211 22 C -0.128 4.128 23 H 0.085 0.915 24 H 0.018 0.982 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.120 0.880 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.761 5.155 14.919 16.487 hybrid contribution -2.656 -0.888 -1.537 3.195 sum 2.105 4.267 13.382 14.202 Atomic orbital electron populations 1.21687 0.98232 0.97605 1.01318 1.24771 0.97955 1.05240 1.07547 0.89524 1.20822 1.32677 1.12407 0.91173 0.93117 1.25648 0.94833 0.95504 1.01602 1.69959 1.36501 1.23582 1.24331 0.85725 0.79883 0.78134 0.78718 1.20201 1.17973 1.21137 1.68621 1.16724 0.83236 0.87176 1.92884 1.83616 1.30135 1.86068 1.27369 1.07745 1.06332 1.09913 0.91663 1.21325 1.03129 0.89701 0.99218 1.21557 0.99513 0.99708 0.94711 1.21548 1.02246 0.93934 0.96713 1.21089 0.94684 0.96587 0.97889 0.89521 1.21967 0.96983 1.00594 1.01595 1.21308 1.01924 0.98113 0.91471 0.91481 0.98233 0.94116 0.92621 0.88012 0.92565 0.93443 0.90425 0.91029 0.89949 0.94304 0.91411 0.93750 0.94128 0.88218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.61 8.70 71.98 0.63 -5.98 16 2 C -0.24 -11.40 2.08 29.85 0.06 -11.34 16 3 H 0.09 4.03 7.19 -2.39 -0.02 4.02 16 4 C -0.53 -29.69 8.57 25.60 0.22 -29.47 16 5 H 0.05 2.87 7.71 -2.91 -0.02 2.84 16 6 C 0.03 1.41 5.30 84.66 0.45 1.86 16 7 N -0.91 -51.33 11.32 21.45 0.24 -51.09 16 8 Si 0.95 43.85 29.54 68.60 2.03 45.87 16 9 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 11 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 12 S 1.24 49.19 12.10 -56.49 -0.68 48.50 16 13 O -0.93 -49.43 18.12 -148.98 -2.70 -52.13 16 14 C -0.39 -12.21 1.69 30.59 0.05 -12.15 16 15 H 0.06 2.34 5.47 -2.39 -0.01 2.33 16 16 C -0.10 -2.40 4.94 30.59 0.15 -2.25 16 17 C -0.12 -2.43 5.65 30.60 0.17 -2.26 16 18 C -0.11 -1.83 5.45 30.60 0.17 -1.66 16 19 C -0.08 -1.70 3.20 -10.77 -0.03 -1.73 16 20 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 21 C -0.15 -3.59 8.50 71.98 0.61 -2.98 16 22 C -0.09 -2.27 4.74 30.61 0.15 -2.12 16 23 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 24 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 25 H 0.04 1.78 6.29 -2.39 -0.02 1.76 16 26 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 27 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.06 1.65 6.29 -2.38 -0.01 1.63 16 29 H 0.05 1.12 6.43 -2.39 -0.02 1.10 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.04 1.19 4.81 -2.39 -0.01 1.18 16 36 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -71.99 291.20 2.54 -69.45 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 1.03 Total: 9.49 kcal Atomic # 6 Polarization: -72.71 SS G_CDS: 2.62 Total: -70.09 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 0.24 Total: -51.09 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -2.70 Total: -52.13 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: 49.19 SS G_CDS: -0.68 Total: 48.50 kcal Total: -71.99 2.54 -69.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218014881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.461 kcal (2) G-P(sol) polarization free energy of solvation -71.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds