Wall clock time and date at job start Mon Mar 30 2020 06:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39074 * 119.36465 * 2 1 4 4 C 1.36187 * 121.80435 * 179.97438 * 3 2 1 5 5 C 1.40824 * 119.65674 * 359.97438 * 4 3 2 6 6 N 1.32323 * 135.17783 * 179.97438 * 5 4 3 7 7 N 1.28268 * 112.89903 * 180.02562 * 6 5 4 8 8 C 1.46503 * 124.14462 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47073 * 300.02299 * 8 7 6 10 10 C 1.52995 * 109.47077 * 60.02658 * 8 7 6 11 11 C 1.37410 * 111.70239 * 0.23288 * 7 6 5 12 12 C 1.39041 * 127.45613 * 179.77358 * 11 7 6 13 13 H 1.07999 * 120.00186 * 29.29348 * 12 11 7 14 14 C 1.40362 * 119.99627 * 209.29699 * 12 11 7 15 15 N 1.30684 * 120.00430 * 18.47845 * 14 12 11 16 16 Si 1.86805 * 119.99708 * 198.47501 * 14 12 11 17 17 H 1.48501 * 109.47065 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47101 * 120.00339 * 16 14 12 19 19 H 1.48505 * 109.47031 * 240.00025 * 16 14 12 20 20 C 1.46092 * 105.08444 * 359.64367 * 11 7 6 21 21 C 1.37809 * 119.36687 * 179.97438 * 2 1 3 22 22 H 1.09002 * 109.47455 * 90.00439 * 1 2 3 23 23 H 1.09006 * 109.47405 * 210.00227 * 1 2 3 24 24 H 1.09002 * 109.47466 * 329.99957 * 1 2 3 25 25 H 1.08006 * 119.09794 * 359.94939 * 3 2 1 26 26 H 1.07997 * 120.17569 * 179.97438 * 4 3 2 27 27 H 1.08999 * 109.46908 * 180.02562 * 8 7 6 28 28 H 1.09007 * 109.47253 * 60.00883 * 9 8 7 29 29 H 1.08994 * 109.47579 * 300.00115 * 9 8 7 30 30 H 1.09004 * 109.46984 * 179.97438 * 9 8 7 31 31 H 1.08999 * 109.47453 * 299.99913 * 10 8 7 32 32 H 1.08997 * 109.47048 * 60.00042 * 10 8 7 33 33 H 1.09006 * 109.46989 * 179.97438 * 10 8 7 34 34 H 0.96998 * 119.99995 * 179.97438 * 15 14 12 35 35 H 1.08000 * 120.31005 * 0.04372 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1890 1.2121 0.0000 4 6 3.5496 1.2700 0.0005 5 6 4.2979 0.0770 0.0016 6 7 5.5868 -0.2225 0.0019 7 7 5.8055 -1.4864 0.0025 8 6 7.1404 -2.0899 0.0025 9 6 7.9021 -1.6430 -1.2469 10 6 7.9024 -1.6426 1.2515 11 6 4.6341 -2.2047 -0.0025 12 6 4.4904 -3.5877 -0.0077 13 1 5.2449 -4.2108 0.4492 14 6 3.3646 -4.1739 -0.6070 15 7 2.6469 -3.4899 -1.4584 16 14 2.8923 -5.9319 -0.1876 17 1 3.8591 -6.4830 0.7957 18 1 1.5271 -5.9518 0.3966 19 1 2.9148 -6.7582 -1.4213 20 6 3.5726 -1.2011 0.0021 21 6 2.1828 -1.2010 0.0005 22 1 -0.3634 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 1.6241 2.1326 -0.0008 26 1 4.0522 2.2259 0.0001 27 1 7.0481 -3.1759 0.0026 28 1 7.9945 -0.5568 -1.2471 29 1 7.3593 -1.9616 -2.1368 30 1 8.8955 -2.0917 -1.2468 31 1 7.9947 -0.5565 1.2514 32 1 7.3597 -1.9610 2.1416 33 1 8.8955 -2.0920 1.2517 34 1 1.8691 -3.8952 -1.8728 35 1 1.6376 -2.1333 0.0002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220192556.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:28 Heat of formation + Delta-G solvation = 65.065161 kcal Electronic energy + Delta-G solvation = -17622.757926 eV Core-core repulsion = 15007.210974 eV Total energy + Delta-G solvation = -2615.546953 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.21720 -36.69445 -34.19688 -34.11255 -30.74050 -29.67344 -28.68545 -26.80982 -26.55427 -24.25652 -22.78887 -20.44260 -19.89954 -18.95807 -17.07556 -15.91855 -15.55747 -14.75691 -14.20458 -13.91771 -13.67996 -13.36346 -12.72823 -12.70148 -12.49659 -12.21549 -11.88400 -11.81761 -11.73707 -11.40324 -11.16007 -11.09075 -10.89321 -10.65376 -10.49621 -10.28007 -9.93620 -9.82446 -9.35504 -8.50614 -8.25331 -7.22062 -7.00054 -6.35325 -4.43818 2.25364 2.86163 2.93561 2.98068 3.23105 3.68177 3.92109 3.96364 4.76888 5.22575 5.38849 5.55071 5.62693 5.83052 5.91569 6.03095 6.11631 6.17063 6.20466 6.24979 6.32263 6.47507 6.53893 6.61128 6.64063 6.69664 6.85455 6.89356 7.04341 7.21751 7.42980 7.63236 7.86370 8.06016 8.08751 8.34232 8.39584 8.59581 8.82481 9.88641 10.04286 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.013140 C = 0.007247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.948403 B = 2130.422160 C = 3862.541179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.238 4.238 3 C -0.068 4.068 4 C -0.161 4.161 5 C 0.100 3.900 6 N -0.412 5.412 7 N -0.326 5.326 8 C 0.161 3.839 9 C -0.153 4.153 10 C -0.156 4.156 11 C 0.253 3.747 12 C -0.446 4.446 13 H 0.089 0.911 14 C 0.086 3.914 15 N -0.756 5.756 16 Si 0.916 3.084 17 H -0.257 1.257 18 H -0.267 1.267 19 H -0.271 1.271 20 C -0.235 4.235 21 C 0.043 3.957 22 H 0.043 0.957 23 H 0.045 0.955 24 H 0.043 0.957 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.289 0.711 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.908 -1.775 1.457 2.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.240 4.240 3 C -0.089 4.089 4 C -0.183 4.183 5 C -0.050 4.050 6 N -0.241 5.241 7 N -0.109 5.109 8 C 0.058 3.942 9 C -0.211 4.211 10 C -0.214 4.214 11 C 0.128 3.872 12 C -0.482 4.482 13 H 0.107 0.893 14 C -0.140 4.140 15 N -0.379 5.379 16 Si 0.740 3.260 17 H -0.181 1.181 18 H -0.192 1.192 19 H -0.196 1.196 20 C -0.244 4.244 21 C 0.023 3.977 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.037 -1.248 1.303 3.532 hybrid contribution -1.024 -1.155 -0.002 1.543 sum 2.013 -2.403 1.302 3.395 Atomic orbital electron populations 1.20383 0.93459 1.00123 0.99859 1.19042 0.94127 0.93056 1.17790 1.19976 0.93304 0.95945 0.99715 1.19297 0.92543 0.93930 1.12526 1.20295 0.89656 0.94294 1.00791 1.72581 1.17710 0.97371 1.36418 1.45487 1.04836 1.02851 1.57773 1.20976 0.79818 0.97609 0.95750 1.22028 0.99033 1.02598 0.97391 1.22091 0.99221 1.02766 0.97330 1.19823 0.83641 0.91820 0.91936 1.18418 1.06810 0.89271 1.33659 0.89341 1.25884 0.94755 1.00832 0.92496 1.69822 1.13015 1.38491 1.16586 0.86117 0.79803 0.80554 0.79568 1.18088 1.19151 1.19596 1.20095 0.93138 0.91498 1.19658 1.19955 0.91762 0.95559 0.90396 0.93775 0.93610 0.93755 0.88712 0.88542 0.88516 0.91617 0.92344 0.92027 0.91507 0.92625 0.91986 0.89981 0.87716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 9.98 36.01 0.36 -1.14 16 2 C -0.24 -5.41 5.89 -104.47 -0.61 -6.02 16 3 C -0.07 -1.50 9.52 -40.01 -0.38 -1.88 16 4 C -0.16 -3.85 10.09 -39.34 -0.40 -4.25 16 5 C 0.10 2.68 7.51 -83.15 -0.62 2.05 16 6 N -0.41 -10.70 11.37 33.19 0.38 -10.32 16 7 N -0.33 -7.94 3.10 -50.66 -0.16 -8.10 16 8 C 0.16 3.08 3.54 -67.93 -0.24 2.84 16 9 C -0.15 -2.60 9.35 37.16 0.35 -2.25 16 10 C -0.16 -2.57 9.35 37.15 0.35 -2.22 16 11 C 0.25 6.62 6.56 -81.92 -0.54 6.08 16 12 C -0.45 -10.86 8.62 -38.49 -0.33 -11.19 16 13 H 0.09 1.99 7.25 -52.49 -0.38 1.61 16 14 C 0.09 1.97 5.11 -17.24 -0.09 1.88 16 15 N -0.76 -18.34 10.17 55.57 0.56 -17.77 16 16 Si 0.92 17.00 29.60 -169.99 -5.03 11.97 16 17 H -0.26 -4.69 7.11 56.52 0.40 -4.28 16 18 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 19 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 20 C -0.24 -6.37 5.97 -102.95 -0.61 -6.98 16 21 C 0.04 1.09 8.44 -39.47 -0.33 0.75 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 24 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 25 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 26 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 27 H 0.10 1.77 6.82 -51.93 -0.35 1.41 16 28 H 0.06 1.18 8.13 -51.93 -0.42 0.76 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.29 6.31 8.29 -40.82 -0.34 5.97 16 35 H 0.10 2.62 6.47 -52.49 -0.34 2.28 16 LS Contribution 293.54 15.07 4.42 4.42 Total: -1.00 -28.89 293.54 -7.78 -36.68 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -4.85 Total: 5.45 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -3.11 Total: -22.33 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.79 Total: -36.19 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.97 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.89 -7.78 -36.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220192556.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.741 kcal (2) G-P(sol) polarization free energy of solvation -28.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds