Wall clock time and date at job start Mon Mar 30 2020 06:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39074 * 119.36465 * 2 1 4 4 C 1.36187 * 121.80435 * 179.97438 * 3 2 1 5 5 C 1.40824 * 119.65674 * 359.97438 * 4 3 2 6 6 N 1.32323 * 135.17783 * 179.97438 * 5 4 3 7 7 N 1.28268 * 112.89903 * 180.02562 * 6 5 4 8 8 C 1.46503 * 124.14462 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47073 * 300.02299 * 8 7 6 10 10 C 1.52995 * 109.47077 * 60.02658 * 8 7 6 11 11 C 1.37410 * 111.70239 * 0.23288 * 7 6 5 12 12 C 1.39041 * 127.45613 * 179.77358 * 11 7 6 13 13 H 1.07999 * 120.00186 * 29.29348 * 12 11 7 14 14 C 1.40362 * 119.99627 * 209.29699 * 12 11 7 15 15 N 1.30684 * 120.00430 * 18.47845 * 14 12 11 16 16 Si 1.86805 * 119.99708 * 198.47501 * 14 12 11 17 17 H 1.48501 * 109.47065 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47101 * 120.00339 * 16 14 12 19 19 H 1.48505 * 109.47031 * 240.00025 * 16 14 12 20 20 C 1.46092 * 105.08444 * 359.64367 * 11 7 6 21 21 C 1.37809 * 119.36687 * 179.97438 * 2 1 3 22 22 H 1.09002 * 109.47455 * 90.00439 * 1 2 3 23 23 H 1.09006 * 109.47405 * 210.00227 * 1 2 3 24 24 H 1.09002 * 109.47466 * 329.99957 * 1 2 3 25 25 H 1.08006 * 119.09794 * 359.94939 * 3 2 1 26 26 H 1.07997 * 120.17569 * 179.97438 * 4 3 2 27 27 H 1.08999 * 109.46908 * 180.02562 * 8 7 6 28 28 H 1.09007 * 109.47253 * 60.00883 * 9 8 7 29 29 H 1.08994 * 109.47579 * 300.00115 * 9 8 7 30 30 H 1.09004 * 109.46984 * 179.97438 * 9 8 7 31 31 H 1.08999 * 109.47453 * 299.99913 * 10 8 7 32 32 H 1.08997 * 109.47048 * 60.00042 * 10 8 7 33 33 H 1.09006 * 109.46989 * 179.97438 * 10 8 7 34 34 H 0.96998 * 119.99995 * 179.97438 * 15 14 12 35 35 H 1.08000 * 120.31005 * 0.04372 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1890 1.2121 0.0000 4 6 3.5496 1.2700 0.0005 5 6 4.2979 0.0770 0.0016 6 7 5.5868 -0.2225 0.0019 7 7 5.8055 -1.4864 0.0025 8 6 7.1404 -2.0899 0.0025 9 6 7.9021 -1.6430 -1.2469 10 6 7.9024 -1.6426 1.2515 11 6 4.6341 -2.2047 -0.0025 12 6 4.4904 -3.5877 -0.0077 13 1 5.2449 -4.2108 0.4492 14 6 3.3646 -4.1739 -0.6070 15 7 2.6469 -3.4899 -1.4584 16 14 2.8923 -5.9319 -0.1876 17 1 3.8591 -6.4830 0.7957 18 1 1.5271 -5.9518 0.3966 19 1 2.9148 -6.7582 -1.4213 20 6 3.5726 -1.2011 0.0021 21 6 2.1828 -1.2010 0.0005 22 1 -0.3634 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 1.6241 2.1326 -0.0008 26 1 4.0522 2.2259 0.0001 27 1 7.0481 -3.1759 0.0026 28 1 7.9945 -0.5568 -1.2471 29 1 7.3593 -1.9616 -2.1368 30 1 8.8955 -2.0917 -1.2468 31 1 7.9947 -0.5565 1.2514 32 1 7.3597 -1.9610 2.1416 33 1 8.8955 -2.0920 1.2517 34 1 1.8691 -3.8952 -1.8728 35 1 1.6376 -2.1333 0.0002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220192556.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:27 Heat of formation + Delta-G solvation = 49.927719 kcal Electronic energy + Delta-G solvation = -17623.414335 eV Core-core repulsion = 15007.210974 eV Total energy + Delta-G solvation = -2616.203362 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.04113 -38.44638 -35.94703 -35.70882 -32.48606 -31.46685 -30.48486 -28.28001 -28.17053 -26.03521 -24.50096 -22.19725 -21.67247 -20.70803 -18.87740 -17.67458 -17.28269 -16.38575 -15.93618 -15.58688 -15.28358 -14.97153 -14.49385 -14.24532 -14.22825 -13.73647 -13.54341 -13.25541 -13.07137 -12.93503 -12.80016 -12.64538 -12.38427 -12.11820 -12.10915 -11.92123 -11.62045 -11.57288 -11.10571 -10.41079 -10.15812 -9.01597 -8.79250 -8.20716 -6.30106 0.41801 1.27211 1.40677 1.48807 1.56616 2.07395 2.15095 2.32623 2.98162 3.49632 3.71952 4.08902 4.09752 4.23136 4.43420 4.49266 4.63498 4.68079 4.73079 4.80358 4.81905 4.89118 4.94870 5.03607 5.09191 5.13986 5.19377 5.24946 5.31901 5.46083 5.67711 5.82125 6.01680 6.22282 6.25472 6.48755 6.58241 6.75953 7.01971 8.13460 8.19174 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.013140 C = 0.007247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.948403 B = 2130.422160 C = 3862.541179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.237 4.237 3 C -0.066 4.066 4 C -0.176 4.176 5 C 0.063 3.937 6 N -0.426 5.426 7 N -0.330 5.330 8 C 0.143 3.857 9 C -0.142 4.142 10 C -0.144 4.144 11 C 0.220 3.780 12 C -0.465 4.465 13 H 0.100 0.900 14 C 0.048 3.952 15 N -0.790 5.790 16 Si 0.992 3.008 17 H -0.250 1.250 18 H -0.265 1.265 19 H -0.262 1.262 20 C -0.270 4.270 21 C 0.017 3.983 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.071 0.929 25 H 0.135 0.865 26 H 0.113 0.887 27 H 0.103 0.897 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.107 0.893 31 H 0.051 0.949 32 H 0.043 0.957 33 H 0.106 0.894 34 H 0.297 0.703 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.623 -2.465 1.780 3.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.239 4.239 3 C -0.087 4.087 4 C -0.198 4.198 5 C -0.086 4.086 6 N -0.256 5.256 7 N -0.114 5.114 8 C 0.043 3.957 9 C -0.200 4.200 10 C -0.202 4.202 11 C 0.095 3.905 12 C -0.500 4.500 13 H 0.118 0.882 14 C -0.174 4.174 15 N -0.414 5.414 16 Si 0.811 3.189 17 H -0.173 1.173 18 H -0.189 1.189 19 H -0.186 1.186 20 C -0.278 4.278 21 C -0.002 4.002 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.090 0.910 25 H 0.153 0.847 26 H 0.131 0.869 27 H 0.121 0.879 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.125 0.875 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.124 0.876 34 H 0.108 0.892 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.776 -1.916 1.624 3.743 hybrid contribution -0.935 -0.870 -0.130 1.284 sum 1.841 -2.786 1.494 3.658 Atomic orbital electron populations 1.20413 0.90193 1.01794 1.01047 1.19617 0.96637 0.92418 1.15246 1.20408 0.92907 0.97379 0.98033 1.19672 0.93522 0.93849 1.12781 1.20866 0.90212 0.95412 1.02145 1.72485 1.17668 0.98491 1.36930 1.45932 1.06167 1.02277 1.56994 1.21471 0.78373 0.97926 0.97962 1.21964 1.00767 1.01837 0.95388 1.22011 1.00899 1.01954 0.95326 1.20279 0.84347 0.92770 0.93120 1.18774 1.08159 0.88895 1.34220 0.88225 1.26827 0.93927 1.05013 0.91622 1.69882 1.13552 1.40608 1.17360 0.85005 0.79363 0.74943 0.79583 1.17296 1.18922 1.18631 1.20573 0.94281 0.92168 1.20825 1.20103 0.91449 0.96440 0.92233 0.92683 0.93102 0.90969 0.84692 0.86937 0.87894 0.93054 0.94412 0.87492 0.92997 0.93802 0.87584 0.89233 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.68 9.98 71.24 0.71 -1.97 16 2 C -0.24 -10.59 5.89 -19.76 -0.12 -10.70 16 3 C -0.07 -2.83 9.52 21.99 0.21 -2.62 16 4 C -0.18 -8.46 10.09 22.42 0.23 -8.24 16 5 C 0.06 3.49 7.51 41.99 0.32 3.80 16 6 N -0.43 -22.85 11.37 -48.91 -0.56 -23.41 16 7 N -0.33 -16.53 3.10 -314.20 -0.97 -17.50 16 8 C 0.14 5.48 3.54 44.99 0.16 5.64 16 9 C -0.14 -4.75 9.35 71.98 0.67 -4.08 16 10 C -0.14 -4.62 9.35 71.98 0.67 -3.94 16 11 C 0.22 11.94 6.56 40.50 0.27 12.21 16 12 C -0.46 -23.10 8.62 22.98 0.20 -22.90 16 13 H 0.10 4.52 7.25 -2.91 -0.02 4.50 16 14 C 0.05 2.24 5.11 85.38 0.44 2.68 16 15 N -0.79 -39.08 10.17 21.90 0.22 -38.86 16 16 Si 0.99 34.40 29.60 68.60 2.03 36.43 16 17 H -0.25 -8.28 7.11 99.48 0.71 -7.57 16 18 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 19 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 20 C -0.27 -15.11 5.97 -18.78 -0.11 -15.23 16 21 C 0.02 0.90 8.44 22.35 0.19 1.09 16 22 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.05 1.68 8.07 -2.38 -0.02 1.66 16 24 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 25 H 0.14 4.63 8.06 -2.91 -0.02 4.61 16 26 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 27 H 0.10 3.74 6.82 -2.39 -0.02 3.72 16 28 H 0.05 1.85 8.13 -2.38 -0.02 1.83 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.05 1.80 8.12 -2.39 -0.02 1.78 16 32 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.11 2.42 8.14 -2.38 -0.02 2.40 16 34 H 0.30 13.11 8.29 -92.71 -0.77 12.34 16 35 H 0.10 5.05 6.47 -2.91 -0.02 5.03 16 Total: -1.00 -65.10 293.54 5.63 -59.48 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 1.07 Total: 28.12 kcal Atomic # 6 Polarization: -48.09 SS G_CDS: 3.83 Total: -44.26 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -1.31 Total: -79.77 kcal Atomic # 14 Polarization: 34.40 SS G_CDS: 2.03 Total: 36.43 kcal Total: -65.10 5.63 -59.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220192556.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.407 kcal (2) G-P(sol) polarization free energy of solvation -65.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds