Wall clock time and date at job start Mon Mar 30 2020 06:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47636 * 339.22537 * 3 2 1 5 5 C 1.52998 * 109.47399 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.47089 * 179.97438 * 5 4 3 7 7 C 1.38215 * 120.41867 * 89.99782 * 6 5 4 8 8 N 1.31854 * 120.76332 * 179.97438 * 7 6 5 9 9 C 1.31888 * 121.72838 * 0.02562 * 8 7 6 10 10 C 1.38184 * 120.76199 * 0.02562 * 9 8 7 11 11 C 1.50694 * 120.41756 * 179.97438 * 10 9 8 12 12 C 1.52993 * 109.47259 * 270.01881 * 11 10 9 13 13 C 1.50703 * 109.47255 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99875 * 359.97438 * 13 12 11 15 15 C 1.37886 * 120.00033 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99837 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99837 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47139 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46934 * 120.00143 * 17 15 13 20 20 H 1.48506 * 109.47021 * 239.99983 * 17 15 13 21 21 C 1.38628 * 120.41554 * 269.97992 * 6 5 4 22 22 H 1.09005 * 109.46739 * 219.22159 * 3 2 1 23 23 H 1.09005 * 109.47028 * 99.22506 * 3 2 1 24 24 H 1.09001 * 109.47425 * 59.99246 * 4 3 2 25 25 H 1.09005 * 109.46887 * 300.00055 * 4 3 2 26 26 H 1.09001 * 109.47145 * 60.00127 * 5 4 3 27 27 H 1.08992 * 109.46820 * 299.99998 * 5 4 3 28 28 H 1.07994 * 119.62230 * 359.95780 * 7 6 5 29 29 H 1.07999 * 119.61890 * 179.97438 * 9 8 7 30 30 H 1.09005 * 109.47215 * 30.02243 * 11 10 9 31 31 H 1.09007 * 109.47041 * 150.01600 * 11 10 9 32 32 H 1.09007 * 109.47424 * 299.99773 * 12 11 10 33 33 H 1.09000 * 109.47609 * 60.00125 * 12 11 10 34 34 H 0.96998 * 119.99696 * 180.02562 * 16 15 13 35 35 H 1.08003 * 120.79539 * 359.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3477 0.5116 5 6 4.6487 -1.3468 0.5122 6 6 5.1517 -2.6748 1.0168 7 6 5.3859 -3.7146 0.1368 8 7 5.8264 -4.8791 0.5707 9 6 6.0596 -5.0995 1.8500 10 6 5.8474 -4.1075 2.7883 11 6 6.1158 -4.3679 4.2480 12 6 4.8472 -4.9077 4.9115 13 6 5.1155 -5.1676 6.3715 14 1 6.0931 -4.9681 6.7847 15 6 4.1127 -5.6600 7.1797 16 7 2.9220 -5.9023 6.6766 17 14 4.4455 -5.9828 8.9892 18 1 5.8535 -5.6312 9.3040 19 1 3.5313 -5.1546 9.8160 20 1 4.2163 -7.4197 9.2860 21 6 5.3856 -2.8688 2.3693 22 1 2.9709 0.7970 0.6499 23 1 2.9712 0.1656 -1.0144 24 1 2.7557 -2.1441 -0.1381 25 1 2.7554 -1.5127 1.5260 26 1 5.0112 -0.5506 1.1623 27 1 5.0122 -1.1817 -0.5020 28 1 5.2057 -3.5717 -0.9184 29 1 6.4197 -6.0667 2.1680 30 1 6.9167 -5.1010 4.3451 31 1 6.4130 -3.4387 4.7343 32 1 4.0463 -4.1746 4.8145 33 1 4.5500 -5.8369 4.4253 34 1 2.2165 -6.2484 7.2452 35 1 5.2122 -2.0742 3.0800 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225748840.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:33 Heat of formation + Delta-G solvation = 23.764578 kcal Electronic energy + Delta-G solvation = -16032.973252 eV Core-core repulsion = 13415.635371 eV Total energy + Delta-G solvation = -2617.337881 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.03950 -37.26370 -35.35838 -34.43184 -32.47471 -31.89727 -29.28643 -27.42391 -25.32200 -23.31425 -22.68061 -21.43675 -19.90271 -17.72599 -16.65806 -16.52260 -16.36377 -15.53606 -14.66671 -14.53539 -14.04639 -13.55942 -13.51631 -13.12719 -12.86825 -12.79568 -12.69465 -12.39079 -12.04931 -11.94009 -11.74097 -11.42042 -11.07463 -10.99653 -10.90421 -10.60266 -10.00323 -9.85876 -9.24769 -9.17968 -8.99076 -8.40658 -8.33508 -6.04854 -4.08513 1.40484 1.63588 2.58876 2.61829 3.28247 3.36108 3.39558 3.75751 4.11598 4.42144 4.53677 4.66120 4.80028 5.02008 5.03746 5.13107 5.25527 5.31032 5.31560 5.36729 5.51124 5.53734 5.75532 5.89508 6.01553 6.08893 6.28636 6.47853 6.53715 6.76055 6.86672 7.10508 7.39173 7.60472 7.71541 7.93662 8.28447 8.33941 8.98607 9.56275 11.06158 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.018493 B = 0.004711 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.762115 B = 5942.404361 C = 7047.206519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.205 3.795 3 C -0.025 4.025 4 C -0.116 4.116 5 C -0.069 4.069 6 C -0.139 4.139 7 C 0.078 3.922 8 N -0.485 5.485 9 C 0.091 3.909 10 C -0.102 4.102 11 C -0.077 4.077 12 C 0.030 3.970 13 C -0.524 4.524 14 H 0.057 0.943 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.076 4.076 22 H 0.110 0.890 23 H 0.109 0.891 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.146 0.854 29 H 0.153 0.847 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.017 0.983 33 H 0.018 0.982 34 H 0.261 0.739 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.574 10.721 -13.369 18.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.112 4.112 3 C -0.065 4.065 4 C -0.154 4.154 5 C -0.107 4.107 6 C -0.141 4.141 7 C -0.079 4.079 8 N -0.193 5.193 9 C -0.066 4.066 10 C -0.104 4.104 11 C -0.115 4.115 12 C -0.007 4.007 13 C -0.562 4.562 14 H 0.075 0.925 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.102 4.102 22 H 0.128 0.872 23 H 0.127 0.873 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.164 0.836 29 H 0.170 0.830 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.035 0.965 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.841 9.978 -13.931 17.561 hybrid contribution 0.242 0.376 1.702 1.760 sum 4.083 10.355 -12.229 16.536 Atomic orbital electron populations 1.81247 1.13255 1.08440 1.08796 1.29284 0.95436 0.93305 0.93219 1.19357 0.81443 1.00782 1.04940 1.21589 0.95403 0.95251 1.03193 1.20445 0.94125 0.94183 1.01971 1.20715 1.01797 0.97160 0.94456 1.22453 0.97431 0.88541 0.99496 1.67617 1.11521 1.22576 1.17543 1.22671 0.97074 0.99087 0.87760 1.21380 0.96491 0.93705 0.98774 1.20805 1.01562 1.01278 0.87833 1.19086 0.90713 0.96211 0.94737 1.21264 0.97418 1.43367 0.94129 0.92451 1.25028 0.95101 0.95518 0.98714 1.69978 1.02477 1.44998 1.35800 0.86535 0.78350 0.77936 0.85186 1.19663 1.21003 1.20963 1.21416 0.96629 0.97370 0.94789 0.87226 0.87317 0.90734 0.90428 0.90359 0.90403 0.83633 0.83016 0.91781 0.91953 0.96509 0.96388 0.92965 0.85068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.96 18.54 42.15 0.78 -5.18 16 2 C 0.21 1.99 15.43 -20.76 -0.32 1.67 16 3 C -0.03 -0.13 5.70 -29.52 -0.17 -0.30 16 4 C -0.12 -0.86 5.15 -26.73 -0.14 -0.99 16 5 C -0.07 -0.50 5.37 -27.88 -0.15 -0.65 16 6 C -0.14 -1.67 5.15 -104.48 -0.54 -2.20 16 7 C 0.08 1.03 10.86 -17.55 -0.19 0.83 16 8 N -0.49 -7.81 10.36 -13.26 -0.14 -7.95 16 9 C 0.09 1.52 10.86 -17.55 -0.19 1.33 16 10 C -0.10 -1.73 5.15 -104.48 -0.54 -2.27 16 11 C -0.08 -1.49 5.31 -27.89 -0.15 -1.63 16 12 C 0.03 0.74 4.95 -27.89 -0.14 0.60 16 13 C -0.52 -14.38 9.11 -34.44 -0.31 -14.70 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 17 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C -0.08 -1.11 9.54 -39.28 -0.37 -1.48 16 22 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 27 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 28 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.15 2.39 8.06 -52.49 -0.42 1.97 16 30 H 0.06 1.19 8.09 -51.93 -0.42 0.77 16 31 H 0.06 1.15 8.10 -51.92 -0.42 0.73 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.13 1.74 8.06 -52.48 -0.42 1.31 16 LS Contribution 312.56 15.07 4.71 4.71 Total: -1.00 -33.31 312.56 -7.26 -40.58 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -5.03 Total: -4.24 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -3.31 Total: -18.26 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 1.38 Total: -39.04 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.31 -7.26 -40.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225748840.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.340 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds