Wall clock time and date at job start Mon Mar 30 2020 05:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.82793 * 2 1 4 4 C 1.54386 * 109.82940 * 239.02363 * 2 1 3 5 5 C 1.55301 * 102.25460 * 219.12888 * 4 2 1 6 6 C 1.54947 * 100.93950 * 34.13381 * 5 4 2 7 7 H 1.08991 * 110.31396 * 82.47100 * 6 5 4 8 8 C 1.53007 * 110.39370 * 204.59824 * 6 5 4 9 9 O 1.42903 * 109.46915 * 53.90247 * 8 6 5 10 10 Si 1.63101 * 113.99798 * 210.00144 * 9 8 6 11 11 C 1.86303 * 109.47156 * 60.00026 * 10 9 8 12 12 C 1.86303 * 109.47155 * 179.97438 * 10 9 8 13 13 C 1.86303 * 109.47244 * 300.00063 * 10 9 8 14 14 C 1.50693 * 109.47148 * 173.90219 * 8 6 5 15 15 N 1.27941 * 120.00135 * 85.25540 * 14 8 6 16 16 Si 1.86798 * 120.00108 * 265.24606 * 14 8 6 17 17 H 1.48505 * 109.47290 * 354.98738 * 16 14 8 18 18 H 1.48508 * 109.47098 * 114.98495 * 16 14 8 19 19 H 1.48496 * 109.47498 * 234.98556 * 16 14 8 20 20 O 1.43234 * 109.83417 * 120.89048 * 2 1 3 21 21 H 1.09001 * 109.47198 * 300.56653 * 1 2 3 22 22 H 1.09002 * 109.47174 * 180.56397 * 1 2 3 23 23 H 1.09007 * 109.47536 * 60.56539 * 1 2 3 24 24 H 1.09000 * 110.84698 * 337.32365 * 4 2 1 25 25 H 1.09001 * 110.84515 * 100.93930 * 4 2 1 26 26 H 1.09000 * 111.12693 * 276.21496 * 5 4 2 27 27 H 1.08998 * 111.16393 * 152.06796 * 5 4 2 28 28 H 1.09001 * 109.46691 * 293.90491 * 8 6 5 29 29 H 1.09002 * 109.46946 * 59.99911 * 11 10 9 30 30 H 1.09003 * 109.47253 * 179.97438 * 11 10 9 31 31 H 1.09000 * 109.46973 * 300.00177 * 11 10 9 32 32 H 1.08998 * 109.46774 * 60.00415 * 12 10 9 33 33 H 1.08999 * 109.46830 * 180.02562 * 12 10 9 34 34 H 1.08994 * 109.47353 * 299.99919 * 12 10 9 35 35 H 1.09000 * 109.47021 * 59.99740 * 13 10 9 36 36 H 1.09003 * 109.46986 * 180.02562 * 13 10 9 37 37 H 1.09002 * 109.46748 * 299.99875 * 13 10 9 38 38 H 0.97003 * 120.00024 * 359.97438 * 15 14 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0536 -0.7475 -1.2452 5 6 3.2729 -1.5227 -0.6757 6 6 2.7746 -1.8439 0.7558 7 1 2.1400 -2.7299 0.7457 8 6 3.9611 -2.0524 1.6991 9 8 4.8295 -0.9195 1.6299 10 14 6.3977 -1.2675 1.9124 11 6 6.9980 -2.4983 0.6493 12 6 7.4113 0.2909 1.7906 13 6 6.5751 -1.9927 3.6193 14 6 3.4584 -2.2144 3.1105 15 7 3.0870 -3.3649 3.5291 16 14 3.3777 -0.7356 4.2488 17 1 3.9729 0.4441 3.5709 18 1 1.9607 -0.4488 4.5881 19 1 4.1354 -1.0262 5.4925 20 8 2.0159 -0.6917 1.1563 21 1 -0.3634 0.5226 0.8849 22 1 -0.3633 -1.0276 0.0101 23 1 -0.3634 0.5050 -0.8950 24 1 1.3011 -1.4361 -1.6293 25 1 2.3671 -0.0440 -2.0166 26 1 4.1620 -0.8926 -0.6501 27 1 3.4578 -2.4358 -1.2415 28 1 4.5077 -2.9478 1.4030 29 1 6.8942 -2.0740 -0.3494 30 1 8.0462 -2.7306 0.8378 31 1 6.4050 -3.4102 0.7201 32 1 7.0602 1.0113 2.5294 33 1 8.4594 0.0582 1.9790 34 1 7.3075 0.7147 0.7919 35 1 5.9821 -2.9045 3.6901 36 1 7.6233 -2.2248 3.8083 37 1 6.2239 -1.2725 4.3583 38 1 3.1286 -4.1329 2.9379 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228442812.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:00 Heat of formation + Delta-G solvation = -113.554565 kcal Electronic energy + Delta-G solvation = -17480.964138 eV Core-core repulsion = 14867.620690 eV Total energy + Delta-G solvation = -2613.343448 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.136 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.98061 -38.55475 -35.85603 -33.24307 -32.60339 -29.66125 -29.14885 -28.59107 -28.36205 -25.44813 -22.53883 -22.40559 -21.17613 -18.75289 -17.57711 -17.44724 -16.79987 -15.80786 -15.59547 -15.07606 -14.51479 -14.46207 -14.20568 -13.94635 -13.88310 -13.62594 -13.47947 -13.35295 -13.19005 -13.01222 -12.96336 -12.84820 -12.76480 -12.50989 -12.41928 -11.94884 -11.79899 -11.69512 -11.57024 -11.15582 -10.82348 -10.69145 -10.42973 -9.89131 0.85565 1.29501 1.38118 1.76806 1.84945 1.92472 2.00963 2.19996 2.36122 2.71482 3.48843 3.53164 3.79183 3.85443 3.96041 4.10872 4.23732 4.36656 4.43544 4.51556 4.56416 4.62870 4.66149 4.67256 4.67780 4.71738 4.72192 4.74585 4.79233 4.89794 5.05477 5.17307 5.27973 5.33754 5.37160 5.48454 5.54697 6.12409 6.86143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.077 3.923 3 H 0.084 0.916 4 C -0.151 4.151 5 C -0.150 4.150 6 C 0.090 3.910 7 H 0.078 0.922 8 C 0.095 3.905 9 O -0.599 6.599 10 Si 1.237 2.763 11 C -0.506 4.506 12 C -0.463 4.463 13 C -0.515 4.515 14 C -0.036 4.036 15 N -0.624 5.624 16 Si 1.060 2.940 17 H -0.229 1.229 18 H -0.250 1.250 19 H -0.256 1.256 20 O -0.360 6.360 21 H 0.064 0.936 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.185 0.273 -3.367 3.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.019 3.981 3 H 0.102 0.898 4 C -0.188 4.188 5 C -0.188 4.188 6 C 0.031 3.969 7 H 0.096 0.904 8 C 0.035 3.965 9 O -0.557 6.557 10 Si 1.374 2.626 11 C -0.608 4.608 12 C -0.569 4.569 13 C -0.617 4.617 14 C -0.282 4.282 15 N -0.237 5.237 16 Si 0.874 3.126 17 H -0.152 1.152 18 H -0.174 1.174 19 H -0.180 1.180 20 O -0.279 6.279 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.102 0.898 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.526 0.816 -1.791 2.037 hybrid contribution 0.764 -1.307 -1.672 2.256 sum 1.290 -0.491 -3.463 3.728 Atomic orbital electron populations 1.22170 0.94922 1.02556 1.02546 1.22736 0.94105 0.96657 0.84555 0.89837 1.23183 0.97621 0.99814 0.98222 1.23272 0.99658 1.01523 0.94344 1.22990 0.90455 0.90455 0.92987 0.90424 1.21997 0.91335 0.87852 0.95281 1.85516 1.39600 1.41396 1.89166 0.77514 0.54205 0.65550 0.65312 1.26936 1.07040 1.12895 1.13910 1.26242 1.09193 1.16145 1.05353 1.27103 1.05319 1.07690 1.21554 1.32449 0.92083 1.04593 0.99029 1.69503 1.12676 1.01588 1.39913 0.83548 0.81663 0.72801 0.74629 1.15183 1.17400 1.18016 1.88431 1.69910 1.39611 1.29946 0.91736 0.92335 0.91453 0.90487 0.89789 0.88670 0.90099 0.90112 0.90805 0.90583 0.91671 0.90489 0.90445 0.90681 0.91336 0.90343 0.90713 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.06 9.44 37.15 0.35 0.41 16 2 C 0.08 0.02 4.16 -26.01 -0.11 -0.09 16 3 H 0.08 0.00 8.14 -51.93 -0.42 -0.43 16 4 C -0.15 0.22 6.54 -24.78 -0.16 0.06 16 5 C -0.15 0.21 6.51 -24.48 -0.16 0.05 16 6 C 0.09 0.01 3.30 -25.70 -0.08 -0.08 16 7 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 8 C 0.10 0.00 1.80 -27.88 -0.05 -0.05 16 9 O -0.60 -0.05 5.67 -41.29 -0.23 -0.28 16 10 Si 1.24 -1.91 11.95 -169.99 -2.03 -3.94 16 11 C -0.51 0.84 8.56 101.05 0.87 1.71 16 12 C -0.46 0.53 8.65 101.05 0.87 1.41 16 13 C -0.51 0.21 7.43 101.05 0.75 0.96 16 14 C -0.04 -0.06 3.36 -13.90 -0.05 -0.11 16 15 N -0.62 -1.28 13.48 56.23 0.76 -0.52 16 16 Si 1.06 2.72 24.89 -169.99 -4.23 -1.51 16 17 H -0.23 -0.41 6.88 56.52 0.39 -0.02 16 18 H -0.25 -0.89 7.11 56.52 0.40 -0.49 16 19 H -0.26 -0.64 7.11 56.52 0.40 -0.24 16 20 O -0.36 -0.75 9.34 -41.29 -0.39 -1.13 16 21 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 22 H 0.06 0.00 8.14 -51.93 -0.42 -0.43 16 23 H 0.07 -0.10 8.14 -51.92 -0.42 -0.52 16 24 H 0.08 -0.14 7.85 -51.93 -0.41 -0.55 16 25 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 26 H 0.09 -0.12 7.18 -51.93 -0.37 -0.49 16 27 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 28 H 0.08 -0.19 6.15 -51.93 -0.32 -0.51 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 30 H 0.08 -0.13 7.96 -51.93 -0.41 -0.54 16 31 H 0.06 -0.12 7.10 -51.93 -0.37 -0.49 16 32 H 0.08 -0.06 7.96 -51.93 -0.41 -0.48 16 33 H 0.08 -0.14 7.96 -51.93 -0.41 -0.55 16 34 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 35 H 0.07 0.00 7.24 -51.93 -0.38 -0.38 16 36 H 0.08 -0.09 7.96 -51.93 -0.41 -0.50 16 37 H 0.07 0.00 6.41 -51.93 -0.33 -0.33 16 38 H 0.32 0.01 8.73 -40.82 -0.36 -0.35 16 LS Contribution 301.62 15.07 4.55 4.55 Total: 0.00 -2.93 301.62 -6.13 -9.06 By element: Atomic # 1 Polarization: -3.69 SS G_CDS: -6.78 Total: -10.47 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 2.23 Total: 4.25 kcal Atomic # 7 Polarization: -1.28 SS G_CDS: 0.76 Total: -0.52 kcal Atomic # 8 Polarization: -0.80 SS G_CDS: -0.62 Total: -1.42 kcal Atomic # 14 Polarization: 0.81 SS G_CDS: -6.26 Total: -5.45 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -2.93 -6.13 -9.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228442812.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.491 kcal (2) G-P(sol) polarization free energy of solvation -2.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds