Wall clock time and date at job start Mon Mar 30 2020 06:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00393 * 2 1 4 4 H 1.48502 * 109.46748 * 269.99807 * 3 2 1 5 5 H 1.48500 * 109.46924 * 29.99521 * 3 2 1 6 6 H 1.48494 * 109.47234 * 149.99365 * 3 2 1 7 7 C 1.37874 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00366 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00148 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47581 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47178 * 180.02562 * 10 9 7 12 12 C 1.36827 * 125.06338 * 264.69464 * 11 10 9 13 13 C 1.34241 * 109.92922 * 180.27053 * 12 11 10 14 14 C 1.46480 * 106.99909 * 359.97438 * 13 12 11 15 15 C 1.39629 * 134.02993 * 180.02562 * 14 13 12 16 16 C 1.36630 * 119.76426 * 180.02562 * 15 14 13 17 17 C 1.50697 * 119.73384 * 179.97438 * 16 15 14 18 18 N 1.46902 * 109.47271 * 89.99829 * 17 16 15 19 19 C 1.38831 * 120.52783 * 359.97438 * 16 15 14 20 20 C 1.37754 * 120.66366 * 0.02562 * 19 16 15 21 21 C 1.37695 * 125.06380 * 85.00117 * 11 10 9 22 22 H 0.97003 * 119.99529 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47033 * 60.00381 * 9 7 2 24 24 H 1.08997 * 109.47420 * 300.00733 * 9 7 2 25 25 H 1.08993 * 109.47209 * 59.99956 * 10 9 7 26 26 H 1.09002 * 109.46971 * 300.00067 * 10 9 7 27 27 H 1.07996 * 125.03630 * 0.22907 * 12 11 10 28 28 H 1.08008 * 126.49961 * 180.02562 * 13 12 11 29 29 H 1.08001 * 120.12165 * 0.02562 * 15 14 13 30 30 H 1.09008 * 109.46948 * 209.99270 * 17 16 15 31 31 H 1.08998 * 109.47780 * 329.99592 * 17 16 15 32 32 H 1.00902 * 111.00109 * 56.04463 * 18 17 16 33 33 H 1.00901 * 110.99653 * 179.97438 * 18 17 16 34 34 H 1.08001 * 119.66859 * 179.97438 * 19 16 15 35 35 H 1.08003 * 120.10529 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0214 -2.6368 0.0010 11 7 5.4864 -2.6368 0.0022 12 6 6.2733 -2.7399 -1.1124 13 6 7.5689 -2.7136 -0.7618 14 6 7.6154 -2.5823 0.6964 15 6 8.6496 -2.5018 1.6310 16 6 8.3551 -2.3815 2.9598 17 6 9.4718 -2.2952 3.9680 18 7 9.8399 -0.8878 4.1718 19 6 7.0353 -2.3380 3.3885 20 6 5.9997 -2.4158 2.4834 21 6 6.2765 -2.5390 1.1256 22 1 -0.4849 0.8401 -0.0004 23 1 3.8745 -0.6803 0.8912 24 1 3.8752 -0.6805 -0.8887 25 1 3.6585 -3.1504 -0.8892 26 1 3.6577 -3.1508 0.8907 27 1 5.9066 -2.8299 -2.1242 28 1 8.4163 -2.7765 -1.4286 29 1 9.6786 -2.5346 1.3049 30 1 9.1414 -2.7249 4.9138 31 1 10.3367 -2.8474 3.6005 32 1 9.0390 -0.3412 4.4509 33 1 10.5872 -0.8033 4.8445 34 1 6.8184 -2.2430 4.4422 35 1 4.9764 -2.3816 2.8269 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229717234.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:17 Heat of formation + Delta-G solvation = 49.177466 kcal Electronic energy + Delta-G solvation = -16746.036174 eV Core-core repulsion = 14129.800279 eV Total energy + Delta-G solvation = -2616.235895 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.95122 -37.57703 -34.40562 -33.74954 -32.28506 -30.55658 -28.99794 -28.38193 -25.34230 -24.03815 -22.31244 -21.20721 -20.27092 -19.67370 -17.26367 -16.27785 -16.16258 -15.93195 -14.91534 -14.62617 -13.99927 -13.97422 -13.94237 -13.75752 -13.09250 -12.81895 -12.60696 -12.33152 -12.18599 -11.82421 -11.30394 -11.15345 -11.10471 -10.53049 -10.32582 -10.18688 -9.94206 -9.43052 -9.25379 -8.80946 -8.67890 -7.79624 -7.24334 -6.18973 -4.20196 1.45378 1.87955 3.08736 3.23438 3.31595 3.34990 3.37426 4.11871 4.34107 4.71815 4.85602 5.03541 5.14394 5.15498 5.27457 5.31785 5.49144 5.57872 5.71994 5.89545 5.98634 6.03245 6.06203 6.23555 6.29466 6.36699 6.67623 6.88358 6.97958 7.00976 7.04710 7.11923 7.19871 7.33405 7.52468 7.64730 7.79740 8.32515 8.81937 9.42147 10.93535 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025324 B = 0.005804 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.400809 B = 4822.957983 C = 5339.547603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.024 4.024 10 C 0.117 3.883 11 N -0.473 5.473 12 C 0.060 3.940 13 C -0.223 4.223 14 C -0.114 4.114 15 C -0.052 4.052 16 C -0.125 4.125 17 C 0.111 3.889 18 N -0.847 5.847 19 C -0.104 4.104 20 C -0.118 4.118 21 C 0.102 3.898 22 H 0.266 0.734 23 H 0.023 0.977 24 H 0.018 0.982 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.165 0.835 28 H 0.141 0.859 29 H 0.116 0.884 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.343 0.657 33 H 0.337 0.663 34 H 0.116 0.884 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.883 -5.182 4.891 18.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.128 4.128 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.093 0.907 9 C -0.062 4.062 10 C -0.003 4.003 11 N -0.153 5.153 12 C -0.067 4.067 13 C -0.248 4.248 14 C -0.119 4.119 15 C -0.071 4.071 16 C -0.126 4.126 17 C -0.019 4.019 18 N -0.377 5.377 19 C -0.123 4.123 20 C -0.139 4.139 21 C -0.005 4.005 22 H 0.076 0.924 23 H 0.041 0.959 24 H 0.036 0.964 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.182 0.818 28 H 0.159 0.841 29 H 0.134 0.866 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.155 0.845 33 H 0.149 0.851 34 H 0.134 0.866 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.535 -5.088 4.090 17.777 hybrid contribution -0.158 0.846 0.860 1.217 sum 16.377 -4.242 4.951 17.627 Atomic orbital electron populations 1.69899 1.06266 1.27215 1.50079 1.24945 0.94711 0.99147 0.94047 0.86804 0.80456 0.83522 0.78769 1.20096 1.21080 1.18942 1.20887 0.88508 0.94855 1.52423 0.90678 1.19920 0.97600 0.91240 0.97409 1.22046 0.73791 1.01255 1.03256 1.44564 1.07135 1.59349 1.04249 1.21862 0.90454 1.02692 0.91686 1.21530 0.95758 1.14669 0.92837 1.19206 0.92124 1.06864 0.93692 1.19968 0.97458 0.98453 0.91259 1.19063 0.93566 1.05956 0.94028 1.20577 0.96120 0.89464 0.95752 1.58741 1.13875 1.10022 1.55078 1.20551 0.91606 1.01760 0.98431 1.20091 0.99619 1.04513 0.89657 1.18302 0.90133 1.03387 0.88718 0.92443 0.95917 0.96404 0.89730 0.90211 0.81810 0.84140 0.86610 0.95169 0.90732 0.84463 0.85058 0.86597 0.86049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.53 -14.51 9.66 -34.44 -0.33 -14.85 16 8 H 0.08 2.18 7.99 -52.48 -0.42 1.76 16 9 C -0.02 -0.55 4.36 -27.88 -0.12 -0.68 16 10 C 0.12 2.25 5.94 -4.04 -0.02 2.22 16 11 N -0.47 -8.60 2.78 -114.43 -0.32 -8.91 16 12 C 0.06 0.96 11.27 -16.73 -0.19 0.77 16 13 C -0.22 -3.43 11.08 -37.67 -0.42 -3.84 16 14 C -0.11 -1.93 6.37 -105.14 -0.67 -2.60 16 15 C -0.05 -0.78 9.67 -39.64 -0.38 -1.16 16 16 C -0.12 -1.72 5.36 -104.99 -0.56 -2.28 16 17 C 0.11 1.18 6.89 -4.98 -0.03 1.15 16 18 N -0.85 -8.63 9.61 -11.41 -0.11 -8.74 16 19 C -0.10 -1.49 9.66 -39.54 -0.38 -1.88 16 20 C -0.12 -2.00 10.00 -39.43 -0.39 -2.39 16 21 C 0.10 1.86 6.81 -83.99 -0.57 1.29 16 22 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16 24 H 0.02 0.42 7.57 -51.93 -0.39 0.03 16 25 H 0.08 1.51 8.12 -51.93 -0.42 1.09 16 26 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 27 H 0.16 2.10 8.06 -52.49 -0.42 1.68 16 28 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 29 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.03 0.29 8.08 -51.92 -0.42 -0.13 16 31 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 32 H 0.34 3.45 8.99 -39.29 -0.35 3.09 16 33 H 0.34 2.57 9.08 -39.29 -0.36 2.22 16 34 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 35 H 0.12 2.01 8.06 -52.48 -0.42 1.59 16 LS Contribution 298.96 15.07 4.51 4.51 Total: -1.00 -31.19 298.96 -8.86 -40.05 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -4.86 Total: 4.53 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -4.18 Total: -22.22 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.35 Total: -43.86 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.19 -8.86 -40.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229717234.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.224 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds