Wall clock time and date at job start Mon Mar 30 2020 06:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00393 * 2 1 4 4 H 1.48502 * 109.46748 * 269.99807 * 3 2 1 5 5 H 1.48500 * 109.46924 * 29.99521 * 3 2 1 6 6 H 1.48494 * 109.47234 * 149.99365 * 3 2 1 7 7 C 1.37874 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00366 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00148 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47581 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47178 * 180.02562 * 10 9 7 12 12 C 1.36827 * 125.06338 * 264.69464 * 11 10 9 13 13 C 1.34241 * 109.92922 * 180.27053 * 12 11 10 14 14 C 1.46480 * 106.99909 * 359.97438 * 13 12 11 15 15 C 1.39629 * 134.02993 * 180.02562 * 14 13 12 16 16 C 1.36630 * 119.76426 * 180.02562 * 15 14 13 17 17 C 1.50697 * 119.73384 * 179.97438 * 16 15 14 18 18 N 1.46902 * 109.47271 * 89.99829 * 17 16 15 19 19 C 1.38831 * 120.52783 * 359.97438 * 16 15 14 20 20 C 1.37754 * 120.66366 * 0.02562 * 19 16 15 21 21 C 1.37695 * 125.06380 * 85.00117 * 11 10 9 22 22 H 0.97003 * 119.99529 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47033 * 60.00381 * 9 7 2 24 24 H 1.08997 * 109.47420 * 300.00733 * 9 7 2 25 25 H 1.08993 * 109.47209 * 59.99956 * 10 9 7 26 26 H 1.09002 * 109.46971 * 300.00067 * 10 9 7 27 27 H 1.07996 * 125.03630 * 0.22907 * 12 11 10 28 28 H 1.08008 * 126.49961 * 180.02562 * 13 12 11 29 29 H 1.08001 * 120.12165 * 0.02562 * 15 14 13 30 30 H 1.09008 * 109.46948 * 209.99270 * 17 16 15 31 31 H 1.08998 * 109.47780 * 329.99592 * 17 16 15 32 32 H 1.00902 * 111.00109 * 56.04463 * 18 17 16 33 33 H 1.00901 * 110.99653 * 179.97438 * 18 17 16 34 34 H 1.08001 * 119.66859 * 179.97438 * 19 16 15 35 35 H 1.08003 * 120.10529 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0214 -2.6368 0.0010 11 7 5.4864 -2.6368 0.0022 12 6 6.2733 -2.7399 -1.1124 13 6 7.5689 -2.7136 -0.7618 14 6 7.6154 -2.5823 0.6964 15 6 8.6496 -2.5018 1.6310 16 6 8.3551 -2.3815 2.9598 17 6 9.4718 -2.2952 3.9680 18 7 9.8399 -0.8878 4.1718 19 6 7.0353 -2.3380 3.3885 20 6 5.9997 -2.4158 2.4834 21 6 6.2765 -2.5390 1.1256 22 1 -0.4849 0.8401 -0.0004 23 1 3.8745 -0.6803 0.8912 24 1 3.8752 -0.6805 -0.8887 25 1 3.6585 -3.1504 -0.8892 26 1 3.6577 -3.1508 0.8907 27 1 5.9066 -2.8299 -2.1242 28 1 8.4163 -2.7765 -1.4286 29 1 9.6786 -2.5346 1.3049 30 1 9.1414 -2.7249 4.9138 31 1 10.3367 -2.8474 3.6005 32 1 9.0390 -0.3412 4.4509 33 1 10.5872 -0.8033 4.8445 34 1 6.8184 -2.2430 4.4422 35 1 4.9764 -2.3816 2.8269 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229717234.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:17 Heat of formation + Delta-G solvation = 30.007068 kcal Electronic energy + Delta-G solvation = -16746.867465 eV Core-core repulsion = 14129.800279 eV Total energy + Delta-G solvation = -2617.067186 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.18156 -38.70378 -35.98692 -34.92953 -34.05093 -31.98603 -30.30673 -29.66267 -26.87900 -25.24404 -23.49550 -22.95700 -21.41761 -20.98161 -19.20055 -17.65309 -17.28534 -16.98043 -16.58062 -15.80414 -15.49528 -15.41173 -15.01470 -14.89114 -14.69961 -14.46968 -13.96277 -13.63529 -13.43446 -13.13841 -12.95845 -12.70258 -12.30055 -12.07079 -11.94100 -11.79561 -11.67353 -11.52712 -10.86599 -10.50914 -9.57461 -8.99719 -8.48134 -8.38796 -6.44468 0.26613 0.69723 1.27854 1.30910 1.41881 1.87566 2.04065 2.26884 2.95772 2.96231 3.75380 3.88252 3.91916 4.00022 4.10677 4.19418 4.33195 4.44454 4.55828 4.60461 4.64176 4.77580 4.88995 4.93062 5.09083 5.13863 5.19918 5.22633 5.47247 5.50681 5.78298 5.93350 5.99643 6.12002 6.26294 6.39606 6.47782 6.62954 6.66790 7.21317 8.76826 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025324 B = 0.005804 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.400809 B = 4822.957983 C = 5339.547603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.019 3.981 3 Si 0.941 3.059 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.533 4.533 8 H 0.047 0.953 9 C -0.014 4.014 10 C 0.130 3.870 11 N -0.486 5.486 12 C 0.045 3.955 13 C -0.219 4.219 14 C -0.133 4.133 15 C -0.059 4.059 16 C -0.121 4.121 17 C 0.114 3.886 18 N -0.856 5.856 19 C -0.098 4.098 20 C -0.146 4.146 21 C 0.070 3.930 22 H 0.269 0.731 23 H 0.010 0.990 24 H 0.018 0.982 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.190 0.810 28 H 0.170 0.830 29 H 0.135 0.865 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.343 0.657 33 H 0.353 0.647 34 H 0.140 0.860 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.586 -4.750 5.167 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.180 4.180 3 Si 0.765 3.235 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.571 4.571 8 H 0.065 0.935 9 C -0.052 4.052 10 C 0.009 3.991 11 N -0.168 5.168 12 C -0.080 4.080 13 C -0.243 4.243 14 C -0.138 4.138 15 C -0.078 4.078 16 C -0.123 4.123 17 C -0.016 4.016 18 N -0.388 5.388 19 C -0.117 4.117 20 C -0.166 4.166 21 C -0.036 4.036 22 H 0.078 0.922 23 H 0.029 0.971 24 H 0.037 0.963 25 H 0.115 0.885 26 H 0.094 0.906 27 H 0.207 0.793 28 H 0.187 0.813 29 H 0.153 0.847 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.155 0.845 33 H 0.167 0.833 34 H 0.158 0.842 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 19.277 -4.666 4.369 20.309 hybrid contribution -0.947 0.642 0.845 1.422 sum 18.329 -4.024 5.214 19.477 Atomic orbital electron populations 1.70022 1.07922 1.28344 1.51720 1.25790 0.95461 1.02848 0.93869 0.85790 0.79094 0.79269 0.79298 1.18924 1.20389 1.18644 1.21186 0.90721 0.93806 1.51408 0.93498 1.19745 0.94825 0.94029 0.96584 1.21680 0.75238 0.98461 1.03715 1.44483 1.06338 1.60808 1.05176 1.22397 0.90625 1.02811 0.92212 1.21924 0.96449 1.13374 0.92588 1.19598 0.92030 1.07261 0.94877 1.20287 0.97977 0.98003 0.91515 1.19447 0.94214 1.04143 0.94504 1.20577 0.95383 0.90080 0.95530 1.58702 1.14450 1.09629 1.56007 1.20874 0.91489 1.00102 0.99258 1.20253 0.99987 1.06367 0.90019 1.18687 0.91032 1.04718 0.89200 0.92156 0.97141 0.96341 0.88493 0.90634 0.79294 0.81307 0.84701 0.93585 0.89621 0.84464 0.83321 0.84236 0.87043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.66 13.96 21.45 0.30 -57.36 16 2 C 0.02 1.09 5.47 84.65 0.46 1.55 16 3 Si 0.94 44.76 27.47 68.60 1.88 46.64 16 4 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.26 -12.24 6.54 99.48 0.65 -11.59 16 7 C -0.53 -29.88 9.66 25.60 0.25 -29.63 16 8 H 0.05 2.82 7.99 -2.91 -0.02 2.80 16 9 C -0.01 -0.64 4.36 29.85 0.13 -0.51 16 10 C 0.13 5.06 5.94 86.38 0.51 5.57 16 11 N -0.49 -17.49 2.78 -515.95 -1.43 -18.93 16 12 C 0.05 1.36 11.27 83.00 0.94 2.30 16 13 C -0.22 -6.28 11.08 23.51 0.26 -6.02 16 14 C -0.13 -4.30 6.37 -20.20 -0.13 -4.43 16 15 C -0.06 -1.63 9.67 22.23 0.22 -1.41 16 16 C -0.12 -3.06 5.36 -20.10 -0.11 -3.17 16 17 C 0.11 2.07 6.89 85.56 0.59 2.66 16 18 N -0.86 -14.90 9.61 -190.00 -1.83 -16.73 16 19 C -0.10 -2.67 9.66 22.30 0.22 -2.46 16 20 C -0.15 -4.91 10.00 22.37 0.22 -4.69 16 21 C 0.07 2.54 6.81 39.03 0.27 2.81 16 22 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 23 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 24 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 25 H 0.10 3.47 8.12 -2.39 -0.02 3.45 16 26 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 27 H 0.19 4.47 8.06 -2.91 -0.02 4.44 16 28 H 0.17 3.71 8.06 -2.91 -0.02 3.69 16 29 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 30 H 0.05 0.71 8.08 -2.38 -0.02 0.69 16 31 H 0.09 1.39 8.07 -2.39 -0.02 1.37 16 32 H 0.34 6.01 8.99 -89.69 -0.81 5.20 16 33 H 0.35 4.30 9.08 -89.69 -0.81 3.49 16 34 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 35 H 0.11 3.83 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -67.10 298.96 2.17 -64.93 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -0.58 Total: 18.88 kcal Atomic # 6 Polarization: -41.26 SS G_CDS: 3.82 Total: -37.44 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -2.96 Total: -93.01 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.64 kcal Total: -67.10 2.17 -64.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229717234.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.936 kcal (2) G-P(sol) polarization free energy of solvation -67.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds