Wall clock time and date at job start Mon Mar 30 2020 06:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 7 12 12 C 1.36829 * 125.06244 * 265.02888 * 11 10 9 13 13 C 1.34241 * 109.92675 * 179.97438 * 12 11 10 14 14 C 1.46487 * 106.99924 * 0.02562 * 13 12 11 15 15 C 1.39626 * 134.03561 * 180.02562 * 14 13 12 16 16 C 1.36626 * 119.76771 * 179.97438 * 15 14 13 17 17 C 1.38830 * 120.52512 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.66437 * 179.97438 * 17 16 15 19 19 N 1.46899 * 109.47233 * 90.00083 * 18 17 16 20 20 C 1.37741 * 120.67155 * 0.02562 * 17 16 15 21 21 C 1.37690 * 125.06011 * 84.71913 * 11 10 9 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 27 27 H 1.07993 * 125.03573 * 359.96967 * 12 11 10 28 28 H 1.08005 * 126.49853 * 179.97438 * 13 12 11 29 29 H 1.08004 * 120.11912 * 359.96927 * 15 14 13 30 30 H 1.08005 * 119.73905 * 180.02562 * 16 15 14 31 31 H 1.09003 * 109.47024 * 209.99381 * 18 17 16 32 32 H 1.09000 * 109.47188 * 329.99870 * 18 17 16 33 33 H 1.00901 * 110.99954 * 180.02562 * 19 18 17 34 34 H 1.00904 * 110.99727 * 303.95273 * 19 18 17 35 35 H 1.07996 * 120.11582 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 1.2040 -5.6598 1.1172 13 6 0.5292 -6.7667 0.7686 14 6 0.3952 -6.7450 -0.6899 15 6 -0.1935 -7.6005 -1.6233 16 6 -0.1474 -7.2889 -2.9527 17 6 0.4809 -6.1283 -3.3836 18 6 0.5209 -5.8038 -4.8547 19 7 -0.6604 -5.0073 -5.2128 20 6 1.0690 -5.2708 -2.4802 21 6 1.0269 -5.5643 -1.1208 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.8718 -3.6044 -0.8895 26 1 2.8718 -3.6044 0.8904 27 1 1.4648 -5.3854 2.1286 28 1 0.1565 -7.5290 1.4368 29 1 -0.6837 -8.5054 -1.2955 30 1 -0.6033 -7.9507 -3.6743 31 1 1.4236 -5.2347 -5.0769 32 1 0.5235 -6.7291 -5.4309 33 1 -0.6571 -4.7771 -6.1952 34 1 -1.5107 -5.4866 -4.9569 35 1 1.5557 -4.3706 -2.8252 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229728996.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:57 Heat of formation + Delta-G solvation = 46.649698 kcal Electronic energy + Delta-G solvation = -16815.783922 eV Core-core repulsion = 14199.438414 eV Total energy + Delta-G solvation = -2616.345507 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.82965 -37.41481 -34.46456 -33.53488 -32.05787 -30.38419 -28.75852 -28.19378 -24.78516 -24.32318 -22.28977 -21.18188 -20.49472 -19.30881 -16.85244 -16.22497 -15.97630 -15.66878 -14.84229 -14.65623 -14.14957 -13.94658 -13.72620 -13.67253 -12.94944 -12.55032 -12.32196 -12.20881 -11.77756 -11.59705 -11.30708 -11.03000 -10.98903 -10.59820 -10.41211 -10.13123 -9.80119 -9.33318 -9.10106 -8.61845 -8.46013 -7.67932 -7.12500 -6.09584 -4.15517 1.53212 2.02187 3.18162 3.26961 3.33028 3.35365 3.48951 4.23857 4.38428 4.86285 4.99517 5.12743 5.22958 5.26170 5.33783 5.49194 5.60203 5.74296 5.79782 5.98406 6.10165 6.15954 6.18511 6.33902 6.46609 6.54462 6.86562 6.95722 7.13121 7.22403 7.27525 7.48756 7.50688 7.53437 7.77094 7.80004 7.94924 8.23090 8.90417 9.49599 11.01302 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.006226 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.903158 B = 4496.085441 C = 5456.654528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.012 3.988 10 C 0.107 3.893 11 N -0.468 5.468 12 C 0.064 3.936 13 C -0.228 4.228 14 C -0.112 4.112 15 C -0.079 4.079 16 C -0.148 4.148 17 C -0.082 4.082 18 C 0.109 3.891 19 N -0.844 5.844 20 C -0.091 4.091 21 C 0.102 3.898 22 H 0.263 0.737 23 H 0.022 0.978 24 H 0.025 0.975 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.163 0.837 28 H 0.139 0.861 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.031 0.969 33 H 0.339 0.661 34 H 0.341 0.659 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.962 -13.676 -5.050 14.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.026 4.026 10 C -0.013 4.013 11 N -0.148 5.148 12 C -0.064 4.064 13 C -0.253 4.253 14 C -0.117 4.117 15 C -0.097 4.097 16 C -0.167 4.167 17 C -0.084 4.084 18 C -0.021 4.021 19 N -0.373 5.373 20 C -0.112 4.112 21 C -0.006 4.006 22 H 0.073 0.927 23 H 0.040 0.960 24 H 0.043 0.957 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.181 0.819 28 H 0.157 0.843 29 H 0.133 0.867 30 H 0.129 0.871 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.308 -12.686 -4.516 13.529 hybrid contribution 0.098 0.281 -0.490 0.573 sum 1.407 -12.405 -5.006 13.450 Atomic orbital electron populations 1.69978 1.06128 1.26933 1.49516 1.25003 0.94851 0.99385 0.94854 0.86529 0.79739 0.83122 0.78245 1.20484 1.21092 1.19793 1.21009 0.92972 0.90449 1.52386 0.92384 1.19442 0.94100 0.90582 0.98435 1.22280 0.95585 0.81021 1.02386 1.44553 1.46145 1.19922 1.04165 1.21837 1.00389 0.92553 0.91639 1.21500 1.09968 1.01004 0.92842 1.19212 1.03126 0.95744 0.93653 1.20069 0.99216 0.98433 0.92008 1.20324 1.03248 0.97781 0.95386 1.19229 0.99996 0.94915 0.94294 1.20610 0.94438 0.95300 0.91762 1.58656 1.04693 1.50289 1.23705 1.19931 1.02358 0.99698 0.89206 1.18255 0.99867 0.93731 0.88714 0.92731 0.96008 0.95712 0.90805 0.90367 0.81949 0.84273 0.86749 0.87107 0.90515 0.95134 0.84878 0.84603 0.86119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.53 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.01 0.31 5.30 -27.88 -0.15 0.16 16 10 C 0.11 2.20 5.94 -4.04 -0.02 2.18 16 11 N -0.47 -9.11 2.78 -114.43 -0.32 -9.42 16 12 C 0.06 1.08 11.27 -16.73 -0.19 0.89 16 13 C -0.23 -3.71 11.08 -37.67 -0.42 -4.13 16 14 C -0.11 -2.00 6.37 -105.14 -0.67 -2.67 16 15 C -0.08 -1.20 10.05 -39.65 -0.40 -1.60 16 16 C -0.15 -2.13 9.62 -39.94 -0.38 -2.51 16 17 C -0.08 -1.28 5.39 -104.58 -0.56 -1.85 16 18 C 0.11 1.39 6.89 -4.97 -0.03 1.36 16 19 N -0.84 -10.63 9.61 -11.41 -0.11 -10.74 16 20 C -0.09 -1.67 9.63 -39.43 -0.38 -2.05 16 21 C 0.10 1.98 6.81 -83.98 -0.57 1.41 16 22 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 26 H 0.08 1.47 8.12 -51.93 -0.42 1.05 16 27 H 0.16 2.27 8.06 -52.49 -0.42 1.85 16 28 H 0.14 1.85 8.06 -52.48 -0.42 1.42 16 29 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 30 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 31 H 0.08 0.97 8.08 -51.93 -0.42 0.56 16 32 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.34 3.37 9.08 -39.29 -0.36 3.01 16 34 H 0.34 3.99 8.99 -39.29 -0.35 3.64 16 35 H 0.12 2.28 8.06 -52.49 -0.42 1.85 16 LS Contribution 302.56 15.07 4.56 4.56 Total: -1.00 -31.60 302.56 -9.24 -40.84 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -4.89 Total: 6.49 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -4.19 Total: -22.08 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.31 Total: -46.10 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.60 -9.24 -40.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229728996.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.488 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds