Wall clock time and date at job start Mon Mar 30 2020 06:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 7 12 12 C 1.36829 * 125.06244 * 265.02888 * 11 10 9 13 13 C 1.34241 * 109.92675 * 179.97438 * 12 11 10 14 14 C 1.46487 * 106.99924 * 0.02562 * 13 12 11 15 15 C 1.39626 * 134.03561 * 180.02562 * 14 13 12 16 16 C 1.36626 * 119.76771 * 179.97438 * 15 14 13 17 17 C 1.38830 * 120.52512 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.66437 * 179.97438 * 17 16 15 19 19 N 1.46899 * 109.47233 * 90.00083 * 18 17 16 20 20 C 1.37741 * 120.67155 * 0.02562 * 17 16 15 21 21 C 1.37690 * 125.06011 * 84.71913 * 11 10 9 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 27 27 H 1.07993 * 125.03573 * 359.96967 * 12 11 10 28 28 H 1.08005 * 126.49853 * 179.97438 * 13 12 11 29 29 H 1.08004 * 120.11912 * 359.96927 * 15 14 13 30 30 H 1.08005 * 119.73905 * 180.02562 * 16 15 14 31 31 H 1.09003 * 109.47024 * 209.99381 * 18 17 16 32 32 H 1.09000 * 109.47188 * 329.99870 * 18 17 16 33 33 H 1.00901 * 110.99954 * 180.02562 * 19 18 17 34 34 H 1.00904 * 110.99727 * 303.95273 * 19 18 17 35 35 H 1.07996 * 120.11582 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 1.2040 -5.6598 1.1172 13 6 0.5292 -6.7667 0.7686 14 6 0.3952 -6.7450 -0.6899 15 6 -0.1935 -7.6005 -1.6233 16 6 -0.1474 -7.2889 -2.9527 17 6 0.4809 -6.1283 -3.3836 18 6 0.5209 -5.8038 -4.8547 19 7 -0.6604 -5.0073 -5.2128 20 6 1.0690 -5.2708 -2.4802 21 6 1.0269 -5.5643 -1.1208 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.8718 -3.6044 -0.8895 26 1 2.8718 -3.6044 0.8904 27 1 1.4648 -5.3854 2.1286 28 1 0.1565 -7.5290 1.4368 29 1 -0.6837 -8.5054 -1.2955 30 1 -0.6033 -7.9507 -3.6743 31 1 1.4236 -5.2347 -5.0769 32 1 0.5235 -6.7291 -5.4309 33 1 -0.6571 -4.7771 -6.1952 34 1 -1.5107 -5.4866 -4.9569 35 1 1.5557 -4.3706 -2.8252 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229728996.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:57 Heat of formation + Delta-G solvation = 27.138144 kcal Electronic energy + Delta-G solvation = -16816.630006 eV Core-core repulsion = 14199.438414 eV Total energy + Delta-G solvation = -2617.191592 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.15441 -38.65546 -36.07147 -35.03668 -33.72875 -31.85810 -30.11560 -29.69977 -26.64859 -25.46449 -23.84938 -22.79655 -21.74643 -20.67707 -18.77122 -17.65036 -17.31308 -16.89245 -16.65385 -15.96372 -15.51232 -15.36962 -15.01320 -14.95850 -14.43310 -14.29750 -13.92278 -13.44166 -13.39002 -12.93518 -12.87333 -12.70776 -12.48210 -12.27002 -12.05057 -11.65213 -11.61479 -11.41445 -10.65529 -10.46610 -9.58142 -8.98548 -8.47171 -8.25911 -6.41747 0.25446 0.75686 1.38544 1.40530 1.51549 1.86550 2.08485 2.38737 2.98474 3.06783 3.75040 3.88209 3.92439 4.05298 4.05947 4.25478 4.38867 4.44067 4.57373 4.63888 4.68563 4.72098 4.89519 4.94529 5.11201 5.21144 5.32921 5.38532 5.62478 5.68274 5.73056 5.95066 6.02436 6.03967 6.26700 6.42508 6.50850 6.65870 6.74885 7.29175 8.85094 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.006226 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.903158 B = 4496.085441 C = 5456.654528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.025 3.975 10 C 0.125 3.875 11 N -0.486 5.486 12 C 0.042 3.958 13 C -0.220 4.220 14 C -0.135 4.135 15 C -0.077 4.077 16 C -0.145 4.145 17 C -0.076 4.076 18 C 0.110 3.890 19 N -0.861 5.861 20 C -0.127 4.127 21 C 0.069 3.931 22 H 0.265 0.735 23 H -0.008 1.008 24 H -0.018 1.018 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.187 0.813 28 H 0.172 0.828 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.354 0.646 34 H 0.347 0.653 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.351 -15.016 -5.390 16.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.181 1.181 7 C -0.584 4.584 8 H 0.090 0.910 9 C -0.012 4.012 10 C 0.004 3.996 11 N -0.167 5.167 12 C -0.084 4.084 13 C -0.244 4.244 14 C -0.140 4.140 15 C -0.095 4.095 16 C -0.164 4.164 17 C -0.078 4.078 18 C -0.020 4.020 19 N -0.394 5.394 20 C -0.149 4.149 21 C -0.038 4.038 22 H 0.074 0.926 23 H 0.010 0.990 24 H 0.000 1.000 25 H 0.092 0.908 26 H 0.117 0.883 27 H 0.204 0.796 28 H 0.190 0.810 29 H 0.165 0.835 30 H 0.167 0.833 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.703 -14.058 -4.862 14.972 hybrid contribution -0.106 0.601 -0.457 0.763 sum 1.597 -13.457 -5.319 14.558 Atomic orbital electron populations 1.70134 1.08149 1.28059 1.50780 1.26043 0.95715 1.03724 0.94200 0.85340 0.78724 0.77795 0.78549 1.19837 1.20753 1.18065 1.21482 0.93818 0.91326 1.51807 0.91035 1.19202 0.94277 0.92897 0.94862 1.21867 0.94206 0.80212 1.03322 1.44510 1.47264 1.19727 1.05201 1.22388 1.01019 0.92855 0.92103 1.21930 1.08677 1.01151 0.92656 1.19663 1.03643 0.95739 0.94920 1.20522 0.98137 0.98888 0.91968 1.20749 1.02184 0.97454 0.96000 1.19633 0.98241 0.94539 0.95339 1.20622 0.94351 0.96689 0.90293 1.58589 1.04873 1.50768 1.25138 1.20023 1.04730 1.00264 0.89861 1.18691 1.01043 0.94985 0.89100 0.92623 0.98955 0.99957 0.90761 0.88346 0.79570 0.81032 0.83464 0.83335 0.91126 0.91991 0.83171 0.83977 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.81 13.29 21.45 0.28 -57.53 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.55 -30.84 9.11 25.60 0.23 -30.60 16 8 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 9 C 0.03 1.38 5.30 29.85 0.16 1.54 16 10 C 0.12 5.31 5.94 86.38 0.51 5.83 16 11 N -0.49 -19.46 2.78 -515.93 -1.43 -20.89 16 12 C 0.04 1.42 11.27 83.00 0.94 2.36 16 13 C -0.22 -6.84 11.08 23.51 0.26 -6.58 16 14 C -0.13 -4.67 6.37 -20.20 -0.13 -4.80 16 15 C -0.08 -2.16 10.05 22.23 0.22 -1.94 16 16 C -0.14 -3.79 9.62 22.03 0.21 -3.57 16 17 C -0.08 -2.31 5.39 -19.84 -0.11 -2.42 16 18 C 0.11 2.67 6.89 85.56 0.59 3.26 16 19 N -0.86 -20.83 9.61 -190.00 -1.83 -22.65 16 20 C -0.13 -4.89 9.63 22.37 0.22 -4.68 16 21 C 0.07 2.74 6.81 39.03 0.27 3.01 16 22 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 23 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 24 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 25 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 26 H 0.10 3.72 8.12 -2.39 -0.02 3.70 16 27 H 0.19 5.06 8.06 -2.91 -0.02 5.04 16 28 H 0.17 4.05 8.06 -2.91 -0.02 4.03 16 29 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 31 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16 32 H 0.06 1.13 8.08 -2.39 -0.02 1.11 16 33 H 0.35 6.57 9.08 -89.69 -0.81 5.76 16 34 H 0.35 7.59 8.99 -89.69 -0.81 6.79 16 35 H 0.10 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -70.88 302.56 2.36 -68.52 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: -0.53 Total: 24.56 kcal Atomic # 6 Polarization: -41.86 SS G_CDS: 3.83 Total: -38.03 kcal Atomic # 7 Polarization: -98.10 SS G_CDS: -2.97 Total: -101.07 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -70.88 2.36 -68.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229728996.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.660 kcal (2) G-P(sol) polarization free energy of solvation -70.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds