Wall clock time and date at job start Mon Mar 30 2020 05:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46794 * 2 1 4 4 C 1.52995 * 109.47462 * 120.00168 * 2 1 3 5 5 C 1.52994 * 109.47367 * 175.00286 * 4 2 1 6 6 S 1.81398 * 109.47620 * 179.97438 * 5 4 2 7 7 O 1.42105 * 109.46778 * 63.60413 * 6 5 4 8 8 C 1.81392 * 103.00326 * 179.97438 * 6 5 4 9 9 C 1.53004 * 109.47265 * 184.81126 * 8 6 5 10 10 C 1.50703 * 115.54547 * 320.06352 * 9 8 6 11 11 H 1.08003 * 120.00063 * 99.50446 * 10 9 8 12 12 C 1.37875 * 120.00294 * 279.50077 * 10 9 8 13 13 N 1.31515 * 119.99609 * 355.02643 * 12 10 9 14 14 Si 1.86791 * 120.00272 * 175.02424 * 12 10 9 15 15 H 1.48503 * 109.47257 * 90.00237 * 14 12 10 16 16 H 1.48503 * 109.47508 * 210.00114 * 14 12 10 17 17 H 1.48502 * 109.47055 * 330.00180 * 14 12 10 18 18 C 1.52996 * 117.50309 * 174.39780 * 9 8 6 19 19 C 1.53009 * 60.03081 * 252.49684 * 18 9 8 20 20 H 1.09002 * 109.47151 * 299.99611 * 1 2 3 21 21 H 1.08997 * 109.47430 * 60.00036 * 1 2 3 22 22 H 1.09007 * 109.47060 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47151 * 240.00389 * 2 1 3 24 24 H 1.08997 * 109.47102 * 300.00164 * 3 2 1 25 25 H 1.08996 * 109.47362 * 60.00184 * 3 2 1 26 26 H 1.08998 * 109.46810 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.47120 * 54.99932 * 4 2 1 28 28 H 1.09003 * 109.46821 * 295.00081 * 4 2 1 29 29 H 1.08999 * 109.47431 * 59.99322 * 5 4 2 30 30 H 1.09003 * 109.46983 * 299.99696 * 5 4 2 31 31 H 1.08996 * 109.47049 * 64.81099 * 8 6 5 32 32 H 1.09001 * 109.47242 * 304.80686 * 8 6 5 33 33 H 0.97008 * 120.00076 * 184.99902 * 13 12 10 34 34 H 1.09007 * 117.49796 * 359.97438 * 18 9 8 35 35 H 1.08996 * 117.50463 * 144.99891 * 18 9 8 36 36 H 1.08999 * 117.49690 * 107.50094 * 19 18 9 37 37 H 1.08998 * 117.49246 * 252.52367 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1879 6 16 4.1697 -1.6854 2.6693 7 8 3.6697 -3.0155 2.6862 8 6 5.9657 -1.7184 2.4167 9 6 6.6240 -2.5227 3.5395 10 6 6.0474 -2.3099 4.9156 11 1 5.3460 -3.0228 5.3234 12 6 6.4154 -1.2052 5.6540 13 7 7.3418 -0.3896 5.1998 14 14 5.5982 -0.8670 7.2992 15 1 6.3657 -1.5361 8.3801 16 1 5.5695 0.5971 7.5460 17 1 4.2096 -1.3929 7.2796 18 6 8.1287 -2.7796 3.4361 19 6 7.1399 -3.9228 3.1978 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6765 1.9564 -0.8899 25 1 1.6766 1.9564 0.8900 26 1 3.1299 1.4426 -0.0005 27 1 1.6055 -1.7197 1.2951 28 1 1.7517 -0.1583 2.1369 29 1 3.9994 0.1676 1.1419 30 1 3.8532 -1.3939 0.3001 31 1 6.3525 -0.6994 2.4248 32 1 6.1891 -2.1843 1.4570 33 1 7.6526 0.3461 5.7504 34 1 8.6496 -2.3760 2.5678 35 1 8.7016 -2.7949 4.3632 36 1 7.0105 -4.2708 2.1730 37 1 7.0622 -4.6897 3.9684 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232573755.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:37 Heat of formation + Delta-G solvation = -42.132493 kcal Electronic energy + Delta-G solvation = -15982.402277 eV Core-core repulsion = 13465.358085 eV Total energy + Delta-G solvation = -2517.044192 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -36.71719 -36.50296 -34.66468 -32.04030 -30.37431 -27.73340 -27.14671 -25.44527 -23.40603 -21.05496 -19.93674 -19.17444 -16.72604 -16.02052 -15.28748 -14.80062 -14.65637 -14.33574 -13.97139 -13.57928 -13.23925 -13.15790 -12.62826 -12.26938 -12.10444 -11.75756 -11.63742 -11.40576 -11.14313 -10.97539 -10.89484 -10.73725 -10.57556 -10.49104 -10.37806 -10.11769 -9.72471 -9.23737 -8.86732 -8.49017 -8.01165 -7.14165 -6.11921 -4.23177 2.42776 3.26531 3.34597 3.39617 3.72102 4.34477 4.69091 4.90364 4.99298 5.01985 5.15528 5.36135 5.40364 5.59209 5.68500 5.73129 5.83758 5.86138 5.96081 5.99494 6.09757 6.19178 6.23482 6.25876 6.45298 6.50196 6.50990 6.58599 6.79596 6.88687 7.11140 7.36400 7.52710 7.81509 8.36073 8.84806 9.45250 10.94675 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.024072 B = 0.006881 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.908501 B = 4068.409736 C = 4590.467247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.090 4.090 5 C -0.480 4.480 6 S 1.270 4.730 7 O -0.858 6.858 8 C -0.380 4.380 9 C 0.061 3.939 10 C -0.512 4.512 11 H 0.067 0.933 12 C 0.080 3.920 13 N -0.869 5.869 14 Si 0.882 3.118 15 H -0.279 1.279 16 H -0.281 1.281 17 H -0.266 1.266 18 C -0.151 4.151 19 C -0.210 4.210 20 H 0.056 0.944 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.064 0.936 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.052 0.948 33 H 0.264 0.736 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.834 5.528 -6.562 11.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.206 4.206 4 C -0.129 4.129 5 C -0.614 4.614 6 S 1.470 4.530 7 O -0.854 6.854 8 C -0.519 4.519 9 C 0.060 3.940 10 C -0.551 4.551 11 H 0.086 0.914 12 C -0.125 4.125 13 N -0.505 5.505 14 Si 0.709 3.291 15 H -0.205 1.205 16 H -0.206 1.206 17 H -0.190 1.190 18 C -0.190 4.190 19 C -0.247 4.247 20 H 0.075 0.925 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.127 0.873 30 H 0.088 0.912 31 H 0.132 0.868 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.356 5.389 -5.848 11.535 hybrid contribution 0.582 -0.871 -1.150 1.555 sum -7.774 4.518 -6.997 11.394 Atomic orbital electron populations 1.21862 0.95576 1.01591 1.01533 1.21138 0.95194 0.96535 0.98521 1.21886 1.01542 0.95764 1.01381 1.21152 0.92955 1.00674 0.98081 1.28098 1.02757 1.11098 1.19442 1.71168 0.86351 0.98525 0.96952 1.92963 1.74789 1.37918 1.79726 1.27021 1.16932 1.06493 1.01447 1.18278 0.92511 0.90518 0.92725 1.20592 1.27545 1.07962 0.99020 0.91442 1.24999 0.94607 0.95341 0.97569 1.70006 1.27462 1.16311 1.36688 0.86721 0.80723 0.77771 0.83913 1.20516 1.20622 1.18988 1.22551 0.94569 1.01625 1.00287 1.23023 1.08968 0.93657 0.99084 0.92514 0.93038 0.92856 0.91780 0.93312 0.92424 0.92183 0.91935 0.90963 0.87331 0.91172 0.86823 0.92924 0.92653 0.92146 0.89810 0.92144 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.19 37.16 0.34 -1.17 16 2 C -0.09 -1.11 2.92 -90.62 -0.26 -1.37 16 3 C -0.15 -1.56 8.95 37.16 0.33 -1.23 16 4 C -0.09 -1.26 4.69 -26.74 -0.13 -1.38 16 5 C -0.48 -7.38 5.68 37.15 0.21 -7.17 16 6 S 1.27 24.90 12.01 -107.50 -1.29 23.61 16 7 O -0.86 -21.32 18.13 -35.23 -0.64 -21.95 16 8 C -0.38 -8.20 6.03 37.16 0.22 -7.97 16 9 C 0.06 1.51 1.65 -155.62 -0.26 1.26 16 10 C -0.51 -13.38 7.53 -34.44 -0.26 -13.63 16 11 H 0.07 1.83 7.82 -52.48 -0.41 1.42 16 12 C 0.08 2.03 5.44 -17.82 -0.10 1.93 16 13 N -0.87 -22.55 12.86 55.43 0.71 -21.84 16 14 Si 0.88 19.43 29.54 -169.99 -5.02 14.41 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 18 C -0.15 -3.62 9.43 -26.73 -0.25 -3.87 16 19 C -0.21 -4.99 9.89 -26.69 -0.26 -5.25 16 20 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.65 6.57 -51.93 -0.34 0.30 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.11 1.44 6.57 -51.92 -0.34 1.09 16 30 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 31 H 0.11 2.37 8.14 -51.93 -0.42 1.94 16 32 H 0.05 1.09 7.95 -51.92 -0.41 0.67 16 33 H 0.26 6.49 8.32 -40.82 -0.34 6.15 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.08 2.09 8.14 -51.93 -0.42 1.67 16 36 H 0.06 1.36 8.09 -51.93 -0.42 0.94 16 37 H 0.08 1.86 8.14 -51.93 -0.42 1.43 16 LS Contribution 316.41 15.07 4.77 4.77 Total: -1.00 -30.14 316.41 -8.44 -38.58 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.56 Total: 2.28 kcal Atomic # 6 Polarization: -39.45 SS G_CDS: -0.41 Total: -39.86 kcal Atomic # 7 Polarization: -22.55 SS G_CDS: 0.71 Total: -21.84 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.64 Total: -21.95 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Atomic # 16 Polarization: 24.90 SS G_CDS: -1.29 Total: 23.61 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.14 -8.44 -38.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232573755.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.552 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds