Wall clock time and date at job start Mon Mar 30 2020 05:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46973 * 2 1 4 4 C 1.53000 * 109.47137 * 119.99310 * 2 1 3 5 5 C 1.53008 * 109.46833 * 65.00464 * 4 2 1 6 6 S 1.81396 * 109.46999 * 180.02562 * 5 4 2 7 7 O 1.42101 * 109.47078 * 296.38748 * 6 5 4 8 8 C 1.81401 * 103.00116 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.47464 * 185.89359 * 8 6 5 10 10 C 1.50700 * 115.56373 * 40.26058 * 9 8 6 11 11 H 1.07998 * 120.00128 * 263.79556 * 10 9 8 12 12 C 1.37878 * 119.99655 * 83.78553 * 10 9 8 13 13 N 1.31513 * 120.00287 * 352.79148 * 12 10 9 14 14 Si 1.86806 * 119.99625 * 172.79043 * 12 10 9 15 15 H 1.48492 * 109.47179 * 60.00278 * 14 12 10 16 16 H 1.48503 * 109.46737 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47011 * 299.99771 * 14 12 10 18 18 C 1.53002 * 117.50096 * 185.95369 * 9 8 6 19 19 C 1.52998 * 60.03336 * 107.47492 * 18 9 8 20 20 H 1.09002 * 109.47377 * 300.00124 * 1 2 3 21 21 H 1.09003 * 109.47031 * 60.00874 * 1 2 3 22 22 H 1.09005 * 109.47001 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47377 * 239.99876 * 2 1 3 24 24 H 1.09002 * 109.47215 * 180.02562 * 3 2 1 25 25 H 1.09005 * 109.46777 * 299.99897 * 3 2 1 26 26 H 1.08997 * 109.47601 * 59.99585 * 3 2 1 27 27 H 1.08996 * 109.47394 * 305.00633 * 4 2 1 28 28 H 1.09000 * 109.47073 * 184.99977 * 4 2 1 29 29 H 1.08996 * 109.46992 * 59.99923 * 5 4 2 30 30 H 1.09000 * 109.46894 * 299.99622 * 5 4 2 31 31 H 1.09001 * 109.47255 * 65.89048 * 8 6 5 32 32 H 1.09003 * 109.47021 * 305.89333 * 8 6 5 33 33 H 0.96997 * 120.00058 * 185.01725 * 13 12 10 34 34 H 1.08998 * 117.49666 * 214.98105 * 18 9 8 35 35 H 1.09005 * 117.49344 * 359.97247 * 18 9 8 36 36 H 1.08997 * 117.49886 * 107.49961 * 19 18 9 37 37 H 1.08997 * 117.49935 * 252.52019 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6353 -2.1954 1.1881 6 16 2.2393 -3.0502 2.6696 7 8 3.6599 -3.0221 2.6866 8 6 1.6706 -4.7543 2.4180 9 6 1.9782 -5.5843 3.6658 10 6 1.7436 -4.8901 4.9827 11 1 2.5655 -4.4124 5.4953 12 6 0.4797 -4.8646 5.5330 13 7 -0.5457 -5.3196 4.8465 14 14 0.2237 -4.1840 7.2537 15 1 0.6616 -2.7657 7.2952 16 1 -1.2153 -4.2690 7.6105 17 1 1.0213 -4.9770 8.2234 18 6 1.7011 -7.0876 3.6005 19 6 3.1426 -6.5749 3.5863 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9563 -0.8901 26 1 1.6766 1.9564 0.8899 27 1 1.6053 -0.2616 2.1370 28 1 3.1263 -0.6442 1.2952 29 1 2.0700 -2.6549 0.3004 30 1 0.5490 -2.2723 1.1422 31 1 2.1844 -5.1857 1.5589 32 1 0.5957 -4.7556 2.2367 33 1 -1.4438 -5.2354 5.2031 34 1 1.3490 -7.5743 4.5100 35 1 1.2991 -7.4851 2.6686 36 1 3.7388 -6.7244 4.4864 37 1 3.6888 -6.6349 2.6450 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232600719.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:39 Heat of formation + Delta-G solvation = -42.760191 kcal Electronic energy + Delta-G solvation = -15971.451444 eV Core-core repulsion = 13454.380033 eV Total energy + Delta-G solvation = -2517.071411 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -36.70028 -36.51727 -34.69684 -32.04771 -30.35632 -27.72444 -27.12283 -25.45535 -23.39685 -21.09012 -19.92218 -19.19164 -16.73198 -16.01713 -15.26911 -14.80575 -14.66166 -14.32231 -13.97642 -13.56414 -13.25666 -13.14472 -12.62750 -12.24947 -12.08619 -11.76219 -11.63665 -11.39308 -11.13968 -10.96283 -10.91271 -10.72207 -10.56692 -10.51409 -10.36367 -10.14185 -9.79373 -9.26387 -8.79717 -8.51732 -8.03734 -7.11381 -6.13572 -4.24055 2.43048 3.28389 3.33654 3.37751 3.72807 4.33517 4.68077 4.92276 5.00984 5.03649 5.15576 5.33882 5.42097 5.61273 5.70556 5.75018 5.85306 5.88322 5.98489 5.99652 6.12508 6.21045 6.23862 6.27613 6.47541 6.49850 6.52514 6.57498 6.77877 6.86316 7.08383 7.36938 7.47560 7.78864 8.33463 8.82448 9.44606 10.93879 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.023466 B = 0.006911 C = 0.006089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.934454 B = 4050.358398 C = 4596.978295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.090 4.090 5 C -0.477 4.477 6 S 1.273 4.727 7 O -0.868 6.868 8 C -0.378 4.378 9 C 0.064 3.936 10 C -0.515 4.515 11 H 0.067 0.933 12 C 0.083 3.917 13 N -0.869 5.869 14 Si 0.886 3.114 15 H -0.269 1.269 16 H -0.285 1.285 17 H -0.275 1.275 18 C -0.154 4.154 19 C -0.211 4.211 20 H 0.057 0.943 21 H 0.048 0.952 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.110 0.890 31 H 0.050 0.950 32 H 0.114 0.886 33 H 0.265 0.735 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.654 8.693 -6.133 10.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.206 4.206 4 C -0.129 4.129 5 C -0.611 4.611 6 S 1.473 4.527 7 O -0.864 6.864 8 C -0.517 4.517 9 C 0.062 3.938 10 C -0.554 4.554 11 H 0.085 0.915 12 C -0.123 4.123 13 N -0.504 5.504 14 Si 0.713 3.287 15 H -0.194 1.194 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.193 4.193 19 C -0.248 4.248 20 H 0.076 0.924 21 H 0.067 0.933 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.128 0.872 31 H 0.069 0.931 32 H 0.132 0.868 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.322 9.025 -5.398 10.599 hybrid contribution 0.501 -0.876 -1.162 1.539 sum -0.822 8.149 -6.561 10.494 Atomic orbital electron populations 1.21889 0.95200 1.02124 1.01378 1.21137 0.96064 0.95681 0.98488 1.21862 1.00893 0.96258 1.01540 1.21158 1.00760 0.92806 0.98133 1.28046 1.09101 1.04803 1.19132 1.71455 0.92952 0.91308 0.96965 1.92930 1.28549 1.84895 1.80018 1.26998 1.07728 1.15148 1.01839 1.18258 0.95880 0.87586 0.92065 1.20508 0.94881 1.36680 1.03317 0.91489 1.24975 0.95888 0.94179 0.97251 1.69974 0.98765 1.43850 1.37843 0.86743 0.77216 0.80035 0.84749 1.19396 1.21062 1.20066 1.22557 0.96234 1.00324 1.00150 1.23060 0.91771 1.10000 1.00012 0.92405 0.93323 0.92138 0.91796 0.92880 0.93049 0.92497 0.90901 0.91991 0.91211 0.87168 0.93103 0.86786 0.92546 0.89935 0.92033 0.90217 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.95 37.16 0.33 -1.28 16 2 C -0.09 -1.13 2.92 -90.62 -0.26 -1.39 16 3 C -0.15 -1.53 9.19 37.16 0.34 -1.19 16 4 C -0.09 -1.27 4.69 -26.73 -0.13 -1.40 16 5 C -0.48 -7.47 5.68 37.16 0.21 -7.25 16 6 S 1.27 25.16 12.02 -107.50 -1.29 23.86 16 7 O -0.87 -21.48 18.14 -35.23 -0.64 -22.12 16 8 C -0.38 -8.20 6.03 37.15 0.22 -7.97 16 9 C 0.06 1.56 1.62 -155.62 -0.25 1.30 16 10 C -0.52 -13.14 7.55 -34.44 -0.26 -13.40 16 11 H 0.07 1.74 7.82 -52.49 -0.41 1.33 16 12 C 0.08 2.06 5.39 -17.82 -0.10 1.97 16 13 N -0.87 -22.22 13.01 55.43 0.72 -21.50 16 14 Si 0.89 19.29 29.55 -169.99 -5.02 14.27 16 15 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 16 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 C -0.15 -3.63 9.56 -26.73 -0.26 -3.88 16 19 C -0.21 -4.94 9.89 -26.69 -0.26 -5.20 16 20 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.06 0.67 6.56 -51.93 -0.34 0.33 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.11 1.52 6.56 -51.92 -0.34 1.18 16 31 H 0.05 1.07 7.95 -51.92 -0.41 0.66 16 32 H 0.11 2.41 8.14 -51.92 -0.42 1.98 16 33 H 0.26 6.44 8.32 -40.82 -0.34 6.10 16 34 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 35 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 36 H 0.08 1.84 8.14 -51.93 -0.42 1.41 16 37 H 0.06 1.37 8.09 -51.93 -0.42 0.95 16 LS Contribution 316.66 15.07 4.77 4.77 Total: -1.00 -29.59 316.66 -8.42 -38.01 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.56 Total: 2.40 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: -0.41 Total: -39.70 kcal Atomic # 7 Polarization: -22.22 SS G_CDS: 0.72 Total: -21.50 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.64 Total: -22.12 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Atomic # 16 Polarization: 25.16 SS G_CDS: -1.29 Total: 23.86 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.59 -8.42 -38.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232600719.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.747 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds