Wall clock time and date at job start Mon Mar 30 2020 05:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47258 * 2 1 4 4 C 1.53007 * 109.47030 * 119.99741 * 2 1 3 5 5 H 1.08993 * 109.47149 * 184.99932 * 4 2 1 6 6 C 1.53005 * 109.47108 * 305.00291 * 4 2 1 7 7 S 1.81403 * 109.46968 * 64.99822 * 4 2 1 8 8 O 1.42104 * 109.46650 * 68.61306 * 7 4 2 9 9 C 1.81397 * 102.99983 * 184.99878 * 7 4 2 10 10 C 1.53001 * 109.46911 * 174.74516 * 9 7 4 11 11 C 1.50698 * 115.54744 * 65.13243 * 10 9 7 12 12 H 1.08003 * 119.99565 * 269.57841 * 11 10 9 13 13 C 1.37877 * 120.00445 * 89.57944 * 11 10 9 14 14 N 1.31513 * 120.00024 * 175.02872 * 13 11 10 15 15 Si 1.86800 * 119.99760 * 355.03504 * 13 11 10 16 16 H 1.48493 * 109.47240 * 86.62612 * 15 13 11 17 17 H 1.48507 * 109.46583 * 206.62764 * 15 13 11 18 18 H 1.48496 * 109.46954 * 326.62067 * 15 13 11 19 19 C 1.52993 * 117.50312 * 279.45476 * 10 9 7 20 20 C 1.53004 * 117.49702 * 210.79598 * 10 9 7 21 21 H 1.09000 * 109.46967 * 60.00567 * 1 2 3 22 22 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47491 * 300.00526 * 1 2 3 24 24 H 1.08998 * 109.47491 * 239.99474 * 2 1 3 25 25 H 1.09004 * 109.47486 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47410 * 299.99556 * 3 2 1 27 27 H 1.09005 * 109.47043 * 59.99664 * 3 2 1 28 28 H 1.08991 * 109.46904 * 179.97438 * 6 4 2 29 29 H 1.09003 * 109.46970 * 59.99497 * 6 4 2 30 30 H 1.08997 * 109.46449 * 299.99765 * 6 4 2 31 31 H 1.08998 * 109.47553 * 294.75218 * 9 7 4 32 32 H 1.09003 * 109.47091 * 54.75051 * 9 7 4 33 33 H 0.97003 * 120.00212 * 180.02562 * 14 13 11 34 34 H 1.09003 * 117.49974 * 0.02562 * 19 10 9 35 35 H 1.09006 * 117.50282 * 145.02149 * 19 10 9 36 36 H 1.09002 * 117.49711 * 214.98127 * 20 10 9 37 37 H 1.09003 * 117.50087 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1262 -0.6443 1.2953 6 6 1.4298 -0.0762 2.4954 7 16 1.5600 -2.4691 1.1767 8 8 2.2822 -3.1158 0.1377 9 6 2.1076 -3.1097 2.7830 10 6 1.6537 -4.5630 2.9341 11 6 2.2728 -5.5408 1.9689 12 1 1.7940 -5.7414 1.0218 13 6 3.4505 -6.1795 2.2948 14 7 3.9396 -7.1041 1.4977 15 14 4.3514 -5.7313 3.8687 16 1 3.8105 -6.5345 4.9945 17 1 5.7999 -6.0165 3.7081 18 1 4.1600 -4.2867 4.1544 19 6 0.2047 -4.8102 3.3581 20 6 1.3455 -5.0637 4.3466 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.7927 -0.5903 3.3853 29 1 0.3434 -0.1531 2.4494 30 1 1.7182 0.9740 2.5389 31 1 3.1948 -3.0605 2.8424 32 1 1.6726 -2.5084 3.5814 33 1 4.7679 -7.5537 1.7271 34 1 -0.4256 -3.9375 3.5291 35 1 -0.3009 -5.6804 2.9392 36 1 1.5901 -6.1005 4.5776 37 1 1.4665 -4.3578 5.1684 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232683573.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:59 Heat of formation + Delta-G solvation = -53.644623 kcal Electronic energy + Delta-G solvation = -16516.213474 eV Core-core repulsion = 13998.670079 eV Total energy + Delta-G solvation = -2517.543395 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.63602 -37.94787 -36.52894 -34.25334 -31.24838 -29.39003 -27.99078 -27.42595 -25.33072 -23.21006 -21.16605 -20.31030 -18.54051 -17.81798 -16.95199 -16.75112 -16.31536 -15.78843 -15.37064 -14.98556 -14.76764 -14.54811 -14.35668 -13.78052 -13.73929 -13.14478 -12.92748 -12.85694 -12.69223 -12.48887 -12.31127 -12.12290 -11.94149 -11.91761 -11.65111 -11.56472 -11.38602 -11.02841 -10.85415 -10.63422 -9.97891 -8.91869 -8.33223 -6.38293 0.78835 1.23514 1.27325 1.38184 2.02425 2.30241 3.01641 3.14166 3.31348 3.79343 3.91981 4.13854 4.22313 4.33251 4.47673 4.49512 4.57113 4.58979 4.67865 4.85263 4.90772 4.97817 4.98262 5.06772 5.11925 5.19035 5.21313 5.28067 5.34067 5.46422 5.51162 5.61654 5.64455 5.72754 6.25814 6.72788 7.30169 8.84687 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.031744 B = 0.007659 C = 0.007358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.843633 B = 3654.736787 C = 3804.342472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.077 4.077 3 C -0.139 4.139 4 C -0.413 4.413 5 H 0.057 0.943 6 C -0.131 4.131 7 S 1.273 4.727 8 O -0.916 6.916 9 C -0.398 4.398 10 C -0.026 4.026 11 C -0.482 4.482 12 H 0.024 0.976 13 C 0.006 3.994 14 N -0.957 5.957 15 Si 0.939 3.061 16 H -0.252 1.252 17 H -0.307 1.307 18 H -0.235 1.235 19 C -0.152 4.152 20 C -0.194 4.194 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.097 0.903 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.150 0.850 33 H 0.261 0.739 34 H 0.140 0.860 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.385 19.459 6.327 23.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.097 4.097 3 C -0.198 4.198 4 C -0.532 4.532 5 H 0.076 0.924 6 C -0.189 4.189 7 S 1.476 4.524 8 O -0.912 6.912 9 C -0.536 4.536 10 C -0.028 4.028 11 C -0.520 4.520 12 H 0.042 0.958 13 C -0.190 4.190 14 N -0.598 5.598 15 Si 0.763 3.237 16 H -0.177 1.177 17 H -0.235 1.235 18 H -0.158 1.158 19 C -0.189 4.189 20 C -0.232 4.232 21 H 0.088 0.912 22 H 0.078 0.922 23 H 0.116 0.884 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.168 0.832 33 H 0.070 0.930 34 H 0.158 0.842 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.677 18.837 5.527 22.842 hybrid contribution 3.773 -0.693 0.072 3.837 sum -7.904 18.144 5.599 20.568 Atomic orbital electron populations 1.22111 0.92082 1.03041 1.04520 1.20787 0.98437 0.96689 0.93742 1.21852 0.99908 0.94635 1.03358 1.27569 1.05041 1.17310 1.03279 0.92400 1.21746 1.03202 1.01250 0.92678 1.68916 1.17202 0.83802 0.82512 1.93064 1.76290 1.71461 1.50336 1.27352 1.05575 1.02855 1.17817 1.18740 0.98482 0.90670 0.94929 1.20613 1.07227 1.22097 1.02040 0.95762 1.25993 0.98101 0.94270 1.00643 1.70099 1.21953 1.27052 1.40683 0.85904 0.76092 0.81437 0.80230 1.17676 1.23490 1.15814 1.23134 0.90184 1.03909 1.01690 1.23081 1.05814 1.01078 0.93250 0.91169 0.92155 0.88404 0.94693 0.94634 0.91487 0.89950 0.91729 0.87697 0.90478 0.93166 0.83250 0.93000 0.84240 0.90417 0.91687 0.86884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 8.53 71.98 0.61 -1.96 16 2 C -0.08 -1.79 2.69 -10.80 -0.03 -1.82 16 3 C -0.14 -2.57 8.95 71.98 0.64 -1.92 16 4 C -0.41 -10.76 2.66 30.60 0.08 -10.68 16 5 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 6 C -0.13 -2.08 8.20 71.98 0.59 -1.48 16 7 S 1.27 44.99 11.31 -56.49 -0.64 44.35 16 8 O -0.92 -49.76 17.40 -148.98 -2.59 -52.35 16 9 C -0.40 -14.79 5.05 71.98 0.36 -14.43 16 10 C -0.03 -1.17 0.82 -52.93 -0.04 -1.21 16 11 C -0.48 -29.24 8.45 25.60 0.22 -29.02 16 12 H 0.02 1.70 8.06 -2.91 -0.02 1.67 16 13 C 0.01 0.36 5.47 84.65 0.46 0.82 16 14 N -0.96 -65.72 13.96 21.45 0.30 -65.42 16 15 Si 0.94 47.47 24.89 68.60 1.71 49.18 16 16 H -0.25 -11.70 7.00 99.48 0.70 -11.00 16 17 H -0.31 -15.91 7.11 99.48 0.71 -15.21 16 18 H -0.24 -10.72 5.83 99.48 0.58 -10.14 16 19 C -0.15 -5.14 9.96 30.61 0.30 -4.83 16 20 C -0.19 -7.27 7.63 30.62 0.23 -7.04 16 21 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.06 0.99 7.14 -2.39 -0.02 0.98 16 23 H 0.10 0.97 6.34 -2.39 -0.02 0.95 16 24 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.08 1.13 6.57 -2.38 -0.02 1.12 16 28 H 0.06 0.99 6.38 -2.39 -0.02 0.97 16 29 H 0.10 1.00 6.34 -2.39 -0.02 0.98 16 30 H 0.08 1.01 6.56 -2.39 -0.02 0.99 16 31 H 0.05 2.18 6.61 -2.39 -0.02 2.16 16 32 H 0.15 3.71 6.56 -2.39 -0.02 3.70 16 33 H 0.26 16.84 8.31 -92.71 -0.77 16.07 16 34 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 35 H 0.08 2.82 8.14 -2.38 -0.02 2.80 16 36 H 0.06 2.74 7.14 -2.39 -0.02 2.73 16 37 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -90.24 297.04 3.10 -87.14 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.89 Total: 10.68 kcal Atomic # 6 Polarization: -77.01 SS G_CDS: 3.44 Total: -73.57 kcal Atomic # 7 Polarization: -65.72 SS G_CDS: 0.30 Total: -65.42 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: -2.59 Total: -52.35 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.71 Total: 49.18 kcal Atomic # 16 Polarization: 44.99 SS G_CDS: -0.64 Total: 44.35 kcal Total: -90.24 3.10 -87.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232683573.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.491 kcal (2) G-P(sol) polarization free energy of solvation -90.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds