Wall clock time and date at job start Mon Mar 30 2020 05:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47360 * 2 1 4 4 C 1.52998 * 109.46978 * 120.00478 * 2 1 3 5 5 H 1.09003 * 109.47143 * 304.99224 * 4 2 1 6 6 C 1.52999 * 109.46875 * 184.99947 * 4 2 1 7 7 S 1.81397 * 109.47450 * 64.99625 * 4 2 1 8 8 O 1.42095 * 109.46958 * 58.61332 * 7 4 2 9 9 C 1.81400 * 103.00099 * 174.99813 * 7 4 2 10 10 C 1.52997 * 109.47188 * 174.86220 * 9 7 4 11 11 C 1.50693 * 115.54956 * 57.10308 * 10 9 7 12 12 H 1.08003 * 119.99840 * 268.66657 * 11 10 9 13 13 C 1.37874 * 120.00362 * 88.66281 * 11 10 9 14 14 N 1.31519 * 120.00322 * 175.45557 * 13 11 10 15 15 Si 1.86800 * 119.99871 * 355.45704 * 13 11 10 16 16 H 1.48500 * 109.47204 * 92.38986 * 15 13 11 17 17 H 1.48504 * 109.47183 * 212.38959 * 15 13 11 18 18 H 1.48498 * 109.47117 * 332.38858 * 15 13 11 19 19 C 1.53001 * 117.49818 * 271.42914 * 10 9 7 20 20 C 1.53004 * 117.49850 * 202.77066 * 10 9 7 21 21 H 1.08998 * 109.46945 * 300.00046 * 1 2 3 22 22 H 1.09002 * 109.47306 * 59.99422 * 1 2 3 23 23 H 1.09000 * 109.47460 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46945 * 239.99954 * 2 1 3 25 25 H 1.08998 * 109.47476 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47383 * 300.00531 * 3 2 1 27 27 H 1.08998 * 109.47129 * 60.00066 * 3 2 1 28 28 H 1.09001 * 109.47393 * 179.97438 * 6 4 2 29 29 H 1.09004 * 109.47325 * 299.99895 * 6 4 2 30 30 H 1.08997 * 109.47421 * 59.99707 * 6 4 2 31 31 H 1.09002 * 109.47194 * 294.86766 * 9 7 4 32 32 H 1.09003 * 109.46870 * 54.86524 * 9 7 4 33 33 H 0.97000 * 120.00101 * 180.02562 * 14 13 11 34 34 H 1.08997 * 117.50223 * 0.02562 * 19 10 9 35 35 H 1.08998 * 117.49528 * 145.02479 * 19 10 9 36 36 H 1.09003 * 117.49443 * 214.98077 * 20 10 9 37 37 H 1.08998 * 117.50115 * 359.97353 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6055 -0.2618 2.1370 6 6 3.5648 -0.6134 1.3136 7 16 1.5600 -2.4692 1.1765 8 8 2.1000 -3.0602 0.0025 9 6 2.3710 -3.1761 2.6371 10 6 1.9556 -4.6404 2.7923 11 6 2.2434 -5.5267 1.6080 12 1 1.4965 -5.6602 0.8394 13 6 3.4600 -6.1671 1.5056 14 7 3.6787 -7.0099 0.5199 15 14 4.7980 -5.8376 2.7668 16 1 4.7025 -6.8360 3.8620 17 1 6.1286 -5.9427 2.1159 18 1 4.6265 -4.4724 3.3252 19 6 0.6925 -4.9342 3.6043 20 6 2.0700 -5.2633 4.1851 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6768 1.9563 0.8900 28 1 3.9282 -1.1269 2.2038 29 1 3.9995 -1.0729 0.4258 30 1 3.8532 0.4368 1.3573 31 1 3.4527 -3.1160 2.5169 32 1 2.0724 -2.6177 3.5243 33 1 4.5346 -7.4607 0.4480 34 1 0.1572 -4.0842 4.0275 35 1 0.0699 -5.7688 3.2820 36 1 2.3530 -6.3143 4.2447 37 1 2.4416 -4.6300 4.9907 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232809902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:02 Heat of formation + Delta-G solvation = -27.037561 kcal Electronic energy + Delta-G solvation = -16573.186497 eV Core-core repulsion = 14056.796871 eV Total energy + Delta-G solvation = -2516.389626 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -36.92594 -36.74503 -34.65829 -31.99117 -30.66497 -27.84428 -27.19933 -25.27183 -23.51873 -21.62735 -20.01072 -18.97060 -17.00451 -16.21375 -15.36241 -14.98585 -14.65405 -14.15096 -13.83653 -13.74688 -13.19545 -12.90612 -12.61140 -12.56780 -12.24725 -12.12637 -11.84751 -11.53110 -11.13374 -11.02895 -10.91500 -10.67897 -10.57749 -10.45399 -10.40892 -10.16290 -9.64394 -9.27841 -8.98569 -8.50256 -8.32065 -7.31211 -6.02189 -4.04447 2.29059 3.30463 3.39735 3.41337 3.50835 4.47716 4.59470 4.90898 4.93719 4.95687 5.13554 5.25599 5.46596 5.58854 5.62420 5.66968 5.75980 5.85241 5.87850 5.96081 5.99391 6.02694 6.15617 6.17574 6.20363 6.28382 6.37135 6.46104 6.47802 6.49860 6.74725 7.10457 7.17422 7.78214 8.53288 9.04129 9.61447 11.10623 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.029838 B = 0.008059 C = 0.007700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.162948 B = 3473.414799 C = 3635.648014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.072 4.072 3 C -0.143 4.143 4 C -0.435 4.435 5 H 0.111 0.889 6 C -0.146 4.146 7 S 1.254 4.746 8 O -0.810 6.810 9 C -0.405 4.405 10 C 0.018 3.982 11 C -0.489 4.489 12 H 0.083 0.917 13 C 0.084 3.916 14 N -0.892 5.892 15 Si 0.872 3.128 16 H -0.278 1.278 17 H -0.295 1.295 18 H -0.259 1.259 19 C -0.181 4.181 20 C -0.198 4.198 21 H 0.061 0.939 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.263 0.737 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.721 14.799 4.763 16.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.091 4.091 3 C -0.202 4.202 4 C -0.548 4.548 5 H 0.129 0.871 6 C -0.204 4.204 7 S 1.450 4.550 8 O -0.805 6.805 9 C -0.543 4.543 10 C 0.016 3.984 11 C -0.526 4.526 12 H 0.101 0.899 13 C -0.119 4.119 14 N -0.529 5.529 15 Si 0.700 3.300 16 H -0.204 1.204 17 H -0.222 1.222 18 H -0.183 1.183 19 C -0.218 4.218 20 C -0.236 4.236 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.121 14.252 3.963 16.418 hybrid contribution 3.290 0.353 0.761 3.396 sum -3.831 14.606 4.724 15.821 Atomic orbital electron populations 1.21953 0.94845 1.02248 1.02074 1.20733 0.95712 0.95968 0.96728 1.21871 1.01147 0.95945 1.01187 1.27952 1.01270 1.22731 1.02887 0.87118 1.21855 0.94198 1.02168 1.02186 1.70340 1.15763 0.82578 0.86308 1.93199 1.78419 1.69579 1.39294 1.27456 1.09013 1.04240 1.13557 1.18858 0.97706 0.90040 0.91774 1.20290 1.01845 1.25889 1.04587 0.89865 1.24906 0.97873 0.94054 0.95027 1.69895 1.24038 1.27398 1.31523 0.86970 0.81367 0.79813 0.81803 1.20421 1.22240 1.18338 1.22944 0.90686 1.02487 1.05718 1.22967 1.01488 1.01139 0.98039 0.92008 0.92424 0.92069 0.90855 0.92671 0.93045 0.92780 0.92570 0.92383 0.92523 0.89890 0.89449 0.92741 0.90363 0.89185 0.89491 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.02 37.16 0.34 -1.27 16 2 C -0.07 -0.93 2.50 -90.62 -0.23 -1.16 16 3 C -0.14 -1.57 8.70 37.15 0.32 -1.25 16 4 C -0.43 -6.05 2.47 -26.73 -0.07 -6.12 16 5 H 0.11 1.22 8.14 -51.92 -0.42 0.79 16 6 C -0.15 -2.25 8.47 37.16 0.31 -1.93 16 7 S 1.25 22.25 11.20 -107.50 -1.20 21.04 16 8 O -0.81 -20.26 17.03 -35.23 -0.60 -20.86 16 9 C -0.40 -7.97 4.83 37.16 0.18 -7.79 16 10 C 0.02 0.42 0.89 -155.66 -0.14 0.28 16 11 C -0.49 -13.96 7.96 -34.44 -0.27 -14.23 16 12 H 0.08 2.62 8.06 -52.48 -0.42 2.20 16 13 C 0.08 2.54 5.47 -17.82 -0.10 2.44 16 14 N -0.89 -28.61 13.96 55.43 0.77 -27.83 16 15 Si 0.87 22.69 24.97 -169.99 -4.24 18.45 16 16 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 18 H -0.26 -6.35 5.56 56.52 0.31 -6.03 16 19 C -0.18 -3.40 9.94 -26.69 -0.27 -3.67 16 20 C -0.20 -4.13 7.67 -26.69 -0.20 -4.33 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.64 7.14 -51.93 -0.37 0.27 16 24 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 25 H 0.05 0.63 6.35 -51.93 -0.33 0.30 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.87 6.64 -51.93 -0.35 0.53 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.73 6.35 -51.93 -0.33 0.41 16 31 H 0.08 1.83 5.43 -51.92 -0.28 1.55 16 32 H 0.09 1.36 8.11 -51.92 -0.42 0.94 16 33 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 36 H 0.09 1.95 7.28 -51.93 -0.38 1.57 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 299.87 15.07 4.52 4.52 Total: -1.00 -35.75 299.87 -7.20 -42.95 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.33 Total: 0.76 kcal Atomic # 6 Polarization: -38.91 SS G_CDS: -0.12 Total: -39.03 kcal Atomic # 7 Polarization: -28.61 SS G_CDS: 0.77 Total: -27.83 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.60 Total: -20.86 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.24 Total: 18.45 kcal Atomic # 16 Polarization: 22.25 SS G_CDS: -1.20 Total: 21.04 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -35.75 -7.20 -42.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232809902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.914 kcal (2) G-P(sol) polarization free energy of solvation -35.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds