Wall clock time and date at job start Mon Mar 30 2020 05:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47360 * 2 1 4 4 C 1.52998 * 109.46978 * 120.00478 * 2 1 3 5 5 H 1.09003 * 109.47143 * 304.99224 * 4 2 1 6 6 C 1.52999 * 109.46875 * 184.99947 * 4 2 1 7 7 S 1.81397 * 109.47450 * 64.99625 * 4 2 1 8 8 O 1.42095 * 109.46958 * 58.61332 * 7 4 2 9 9 C 1.81400 * 103.00099 * 174.99813 * 7 4 2 10 10 C 1.52997 * 109.47188 * 174.86220 * 9 7 4 11 11 C 1.50693 * 115.54956 * 57.10308 * 10 9 7 12 12 H 1.08003 * 119.99840 * 268.66657 * 11 10 9 13 13 C 1.37874 * 120.00362 * 88.66281 * 11 10 9 14 14 N 1.31519 * 120.00322 * 175.45557 * 13 11 10 15 15 Si 1.86800 * 119.99871 * 355.45704 * 13 11 10 16 16 H 1.48500 * 109.47204 * 92.38986 * 15 13 11 17 17 H 1.48504 * 109.47183 * 212.38959 * 15 13 11 18 18 H 1.48498 * 109.47117 * 332.38858 * 15 13 11 19 19 C 1.53001 * 117.49818 * 271.42914 * 10 9 7 20 20 C 1.53004 * 117.49850 * 202.77066 * 10 9 7 21 21 H 1.08998 * 109.46945 * 300.00046 * 1 2 3 22 22 H 1.09002 * 109.47306 * 59.99422 * 1 2 3 23 23 H 1.09000 * 109.47460 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46945 * 239.99954 * 2 1 3 25 25 H 1.08998 * 109.47476 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47383 * 300.00531 * 3 2 1 27 27 H 1.08998 * 109.47129 * 60.00066 * 3 2 1 28 28 H 1.09001 * 109.47393 * 179.97438 * 6 4 2 29 29 H 1.09004 * 109.47325 * 299.99895 * 6 4 2 30 30 H 1.08997 * 109.47421 * 59.99707 * 6 4 2 31 31 H 1.09002 * 109.47194 * 294.86766 * 9 7 4 32 32 H 1.09003 * 109.46870 * 54.86524 * 9 7 4 33 33 H 0.97000 * 120.00101 * 180.02562 * 14 13 11 34 34 H 1.08997 * 117.50223 * 0.02562 * 19 10 9 35 35 H 1.08998 * 117.49528 * 145.02479 * 19 10 9 36 36 H 1.09003 * 117.49443 * 214.98077 * 20 10 9 37 37 H 1.08998 * 117.50115 * 359.97353 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6055 -0.2618 2.1370 6 6 3.5648 -0.6134 1.3136 7 16 1.5600 -2.4692 1.1765 8 8 2.1000 -3.0602 0.0025 9 6 2.3710 -3.1761 2.6371 10 6 1.9556 -4.6404 2.7923 11 6 2.2434 -5.5267 1.6080 12 1 1.4965 -5.6602 0.8394 13 6 3.4600 -6.1671 1.5056 14 7 3.6787 -7.0099 0.5199 15 14 4.7980 -5.8376 2.7668 16 1 4.7025 -6.8360 3.8620 17 1 6.1286 -5.9427 2.1159 18 1 4.6265 -4.4724 3.3252 19 6 0.6925 -4.9342 3.6043 20 6 2.0700 -5.2633 4.1851 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6768 1.9563 0.8900 28 1 3.9282 -1.1269 2.2038 29 1 3.9995 -1.0729 0.4258 30 1 3.8532 0.4368 1.3573 31 1 3.4527 -3.1160 2.5169 32 1 2.0724 -2.6177 3.5243 33 1 4.5346 -7.4607 0.4480 34 1 0.1572 -4.0842 4.0275 35 1 0.0699 -5.7688 3.2820 36 1 2.3530 -6.3143 4.2447 37 1 2.4416 -4.6300 4.9907 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232809902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:02 Heat of formation + Delta-G solvation = -53.338406 kcal Electronic energy + Delta-G solvation = -16574.326987 eV Core-core repulsion = 14056.796871 eV Total energy + Delta-G solvation = -2517.530117 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.61426 -37.80094 -36.36084 -34.22197 -31.79118 -29.40824 -28.04576 -27.40196 -24.62706 -23.20037 -21.29439 -20.62098 -18.65733 -17.97676 -16.90271 -16.71528 -15.98442 -15.35723 -15.29782 -15.09416 -14.81988 -14.64486 -14.32013 -13.98888 -13.51777 -13.12763 -13.08479 -13.01740 -12.74549 -12.54610 -12.22589 -12.12992 -12.00360 -11.92336 -11.64253 -11.60071 -11.46438 -11.00589 -10.85577 -10.57385 -9.95713 -8.81794 -8.31127 -6.34889 0.89547 1.22697 1.25943 1.36996 2.11341 2.31127 3.05211 3.23619 3.31729 3.79233 3.89498 4.16710 4.21313 4.36868 4.41138 4.49486 4.52103 4.56801 4.64452 4.83277 4.89299 4.91685 4.95744 4.98580 5.00880 5.08543 5.15457 5.22309 5.34352 5.47430 5.47710 5.52742 5.62204 5.74655 6.27199 6.75479 7.33759 8.86861 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.029838 B = 0.008059 C = 0.007700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.162948 B = 3473.414799 C = 3635.648014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.078 4.078 3 C -0.140 4.140 4 C -0.414 4.414 5 H 0.164 0.836 6 C -0.151 4.151 7 S 1.276 4.724 8 O -0.903 6.903 9 C -0.402 4.402 10 C -0.023 4.023 11 C -0.476 4.476 12 H 0.029 0.971 13 C 0.010 3.990 14 N -0.956 5.956 15 Si 0.931 3.069 16 H -0.261 1.261 17 H -0.309 1.309 18 H -0.228 1.228 19 C -0.150 4.150 20 C -0.197 4.197 21 H 0.095 0.905 22 H 0.066 0.934 23 H 0.053 0.947 24 H 0.031 0.969 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.017 0.983 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.147 0.853 33 H 0.259 0.741 34 H 0.136 0.864 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.008 18.578 8.709 22.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.098 4.098 3 C -0.198 4.198 4 C -0.531 4.531 5 H 0.182 0.818 6 C -0.209 4.209 7 S 1.478 4.522 8 O -0.898 6.898 9 C -0.539 4.539 10 C -0.025 4.025 11 C -0.514 4.514 12 H 0.047 0.953 13 C -0.186 4.186 14 N -0.597 5.597 15 Si 0.756 3.244 16 H -0.186 1.186 17 H -0.237 1.237 18 H -0.150 1.150 19 C -0.187 4.187 20 C -0.236 4.236 21 H 0.114 0.886 22 H 0.085 0.915 23 H 0.072 0.928 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.036 0.964 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.165 0.835 33 H 0.068 0.932 34 H 0.154 0.846 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.444 18.006 7.932 21.411 hybrid contribution 3.569 -0.702 -0.526 3.676 sum -4.875 17.304 7.406 19.444 Atomic orbital electron populations 1.22026 0.92633 1.02502 1.04294 1.20803 0.97706 0.96892 0.94389 1.21852 1.00593 0.94326 1.03011 1.27773 1.00796 1.18722 1.05813 0.81829 1.21912 0.94948 1.03698 1.00332 1.69027 1.15163 0.84027 0.84033 1.93096 1.80248 1.73244 1.43237 1.27350 1.07311 1.02861 1.16413 1.18766 1.02437 0.90833 0.90469 1.20570 0.99977 1.25559 1.05265 0.95262 1.25896 1.00929 0.94341 0.97408 1.70088 1.24666 1.30154 1.34767 0.86019 0.77262 0.81619 0.79521 1.18603 1.23747 1.15028 1.23104 0.89533 1.03740 1.02296 1.23040 1.03056 1.00356 0.97148 0.88607 0.91539 0.92827 0.95065 0.93565 0.92096 0.90146 0.92417 0.96406 0.89580 0.92534 0.83538 0.93178 0.84596 0.90368 0.91868 0.87348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.02 71.98 0.65 -2.14 16 2 C -0.08 -1.86 2.50 -10.80 -0.03 -1.89 16 3 C -0.14 -2.56 8.70 71.98 0.63 -1.94 16 4 C -0.41 -10.15 2.47 30.59 0.08 -10.07 16 5 H 0.16 2.43 8.14 -2.39 -0.02 2.41 16 6 C -0.15 -4.31 8.47 71.98 0.61 -3.70 16 7 S 1.28 44.14 11.20 -56.49 -0.63 43.51 16 8 O -0.90 -48.01 17.03 -148.98 -2.54 -50.55 16 9 C -0.40 -14.50 4.83 71.98 0.35 -14.16 16 10 C -0.02 -1.01 0.89 -52.93 -0.05 -1.06 16 11 C -0.48 -28.31 7.96 25.60 0.20 -28.11 16 12 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 13 C 0.01 0.64 5.47 84.65 0.46 1.10 16 14 N -0.96 -65.62 13.96 21.45 0.30 -65.32 16 15 Si 0.93 47.67 24.97 68.60 1.71 49.38 16 16 H -0.26 -12.49 7.11 99.48 0.71 -11.79 16 17 H -0.31 -16.38 7.11 99.48 0.71 -15.67 16 18 H -0.23 -10.37 5.56 99.48 0.55 -9.82 16 19 C -0.15 -5.03 9.94 30.62 0.30 -4.73 16 20 C -0.20 -7.48 7.67 30.62 0.23 -7.25 16 21 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.05 1.02 7.14 -2.39 -0.02 1.01 16 24 H 0.03 0.99 8.08 -2.39 -0.02 0.98 16 25 H 0.05 0.92 6.35 -2.39 -0.02 0.91 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.62 6.64 -2.39 -0.02 1.60 16 29 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 1.94 6.35 -2.39 -0.02 1.92 16 31 H 0.06 2.35 5.43 -2.39 -0.01 2.34 16 32 H 0.15 3.50 8.11 -2.39 -0.02 3.48 16 33 H 0.26 16.81 8.31 -92.71 -0.77 16.04 16 34 H 0.14 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 36 H 0.06 2.69 7.28 -2.39 -0.02 2.67 16 37 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -88.13 299.87 3.15 -84.99 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.87 Total: 11.94 kcal Atomic # 6 Polarization: -77.38 SS G_CDS: 3.44 Total: -73.94 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: 0.30 Total: -65.32 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -2.54 Total: -50.55 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 1.71 Total: 49.38 kcal Atomic # 16 Polarization: 44.14 SS G_CDS: -0.63 Total: 43.51 kcal Total: -88.13 3.15 -84.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232809902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.648 kcal (2) G-P(sol) polarization free energy of solvation -88.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds