Wall clock time and date at job start Mon Mar 30 2020 05:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46875 * 2 1 4 4 C 1.53000 * 109.47015 * 120.00055 * 2 1 3 5 5 H 1.09007 * 109.46597 * 305.00068 * 4 2 1 6 6 C 1.52994 * 109.47119 * 184.99964 * 4 2 1 7 7 S 1.81403 * 109.47305 * 64.99942 * 4 2 1 8 8 O 1.42105 * 109.46602 * 291.38880 * 7 4 2 9 9 C 1.81397 * 102.99910 * 175.00232 * 7 4 2 10 10 C 1.53002 * 109.47139 * 182.85493 * 9 7 4 11 11 C 1.50702 * 115.54684 * 294.86635 * 10 9 7 12 12 H 1.08000 * 120.00451 * 95.21101 * 11 10 9 13 13 C 1.37882 * 119.99641 * 274.92787 * 11 10 9 14 14 N 1.31512 * 119.99925 * 355.79475 * 13 11 10 15 15 Si 1.86805 * 119.99825 * 175.79225 * 13 11 10 16 16 H 1.48507 * 109.46990 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46910 * 119.99999 * 15 13 11 18 18 H 1.48497 * 109.47179 * 240.00269 * 15 13 11 19 19 C 1.52997 * 117.49983 * 80.53269 * 10 9 7 20 20 C 1.52993 * 117.50144 * 149.19396 * 10 9 7 21 21 H 1.08996 * 109.46895 * 60.00034 * 1 2 3 22 22 H 1.09006 * 109.47015 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47315 * 300.00067 * 1 2 3 24 24 H 1.08999 * 109.47100 * 239.99433 * 2 1 3 25 25 H 1.08998 * 109.46510 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47331 * 299.99699 * 3 2 1 27 27 H 1.08991 * 109.47129 * 60.00004 * 3 2 1 28 28 H 1.09004 * 109.47299 * 179.97438 * 6 4 2 29 29 H 1.08997 * 109.47434 * 299.99730 * 6 4 2 30 30 H 1.09000 * 109.47173 * 60.00086 * 6 4 2 31 31 H 1.08996 * 109.47224 * 62.85458 * 9 7 4 32 32 H 1.09001 * 109.47098 * 302.84965 * 9 7 4 33 33 H 0.97005 * 119.99672 * 185.00125 * 14 13 11 34 34 H 1.09002 * 117.49874 * 215.00739 * 19 10 9 35 35 H 1.09003 * 117.50221 * 0.02562 * 19 10 9 36 36 H 1.09005 * 117.50015 * 359.97147 * 20 10 9 37 37 H 1.09000 * 117.50254 * 144.97352 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6053 -0.2617 2.1370 6 6 3.5648 -0.6133 1.3137 7 16 1.5601 -2.4692 1.1766 8 8 0.1504 -2.5794 1.3176 9 6 2.3710 -3.1759 2.6373 10 6 2.1175 -4.6841 2.6816 11 6 0.6814 -5.0963 2.8790 12 1 0.0647 -5.3317 2.0242 13 6 0.1564 -5.1783 4.1513 14 7 0.9298 -4.9778 5.1959 15 14 -1.6534 -5.5742 4.3912 16 1 -2.3003 -5.7549 3.0667 17 1 -1.7860 -6.8248 5.1810 18 1 -2.3123 -4.4585 5.1164 19 6 2.9925 -5.5739 1.7964 20 6 3.1981 -5.5639 3.3132 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.9281 -1.1268 2.2040 29 1 3.9995 -1.0729 0.4260 30 1 3.8532 0.4369 1.3574 31 1 1.9663 -2.7129 3.5372 32 1 3.4435 -2.9893 2.5834 33 1 0.5788 -5.1065 6.0910 34 1 2.5294 -6.4574 1.3568 35 1 3.7491 -5.0849 1.1828 36 1 4.0900 -5.0683 3.6968 37 1 2.8704 -6.4406 3.8719 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232829158.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:04 Heat of formation + Delta-G solvation = -53.664885 kcal Electronic energy + Delta-G solvation = -16483.357965 eV Core-core repulsion = 13965.813691 eV Total energy + Delta-G solvation = -2517.544274 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.33533 -37.75837 -36.40686 -34.01969 -31.59710 -29.18141 -28.07096 -27.34203 -24.53821 -22.80450 -21.43202 -20.75088 -18.38285 -17.77284 -16.81933 -16.72193 -16.00526 -15.55085 -15.37911 -14.87302 -14.59523 -14.43789 -14.04609 -13.72922 -13.30850 -13.05282 -12.98943 -12.94668 -12.72296 -12.49239 -12.39298 -12.31800 -12.20867 -11.89229 -11.59515 -11.45656 -11.38602 -10.90248 -10.71365 -10.39012 -9.70079 -8.82563 -8.17184 -6.25702 0.91413 1.23410 1.27954 1.39649 2.11058 2.34461 3.11339 3.23729 3.58453 3.75635 3.98945 4.19273 4.36307 4.46489 4.54220 4.62165 4.71182 4.76528 4.77555 4.80296 4.93680 5.01559 5.07611 5.13047 5.14225 5.17549 5.25974 5.38877 5.39955 5.49276 5.56150 5.65867 5.78227 5.84640 6.35479 6.81819 7.42309 8.89608 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.026572 B = 0.008136 C = 0.006901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.483889 B = 3440.763372 C = 4056.693506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.067 4.067 3 C -0.140 4.140 4 C -0.415 4.415 5 H 0.052 0.948 6 C -0.130 4.130 7 S 1.279 4.721 8 O -0.898 6.898 9 C -0.379 4.379 10 C 0.015 3.985 11 C -0.494 4.494 12 H 0.044 0.956 13 C 0.022 3.978 14 N -0.908 5.908 15 Si 0.931 3.069 16 H -0.274 1.274 17 H -0.269 1.269 18 H -0.292 1.292 19 C -0.177 4.177 20 C -0.157 4.157 21 H 0.077 0.923 22 H 0.051 0.949 23 H 0.029 0.971 24 H 0.108 0.892 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.036 0.964 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.036 0.964 32 H 0.126 0.874 33 H 0.256 0.744 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.290 9.334 -12.477 18.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.086 4.086 3 C -0.198 4.198 4 C -0.533 4.533 5 H 0.071 0.929 6 C -0.188 4.188 7 S 1.481 4.519 8 O -0.894 6.894 9 C -0.517 4.517 10 C 0.013 3.987 11 C -0.532 4.532 12 H 0.062 0.938 13 C -0.177 4.177 14 N -0.548 5.548 15 Si 0.758 3.242 16 H -0.199 1.199 17 H -0.194 1.194 18 H -0.219 1.219 19 C -0.214 4.214 20 C -0.196 4.196 21 H 0.096 0.904 22 H 0.070 0.930 23 H 0.048 0.952 24 H 0.126 0.874 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.144 0.856 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.143 0.857 36 H 0.099 0.901 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.646 8.943 -12.939 17.949 hybrid contribution -2.345 0.625 3.149 3.975 sum 6.301 9.568 -9.791 15.070 Atomic orbital electron populations 1.22203 0.97178 1.02392 1.01394 1.20837 0.93917 0.97683 0.96196 1.21882 1.02460 0.94050 1.01433 1.27630 1.04876 1.18417 1.02395 0.92912 1.21675 0.89195 1.03907 1.04027 1.68971 0.90189 0.88176 1.04590 1.93001 1.29785 1.82845 1.83763 1.27084 1.08534 1.03096 1.12939 1.18380 0.90738 0.87317 1.02220 1.20819 0.95932 1.44769 0.91712 0.93801 1.25540 1.00268 0.95463 0.96434 1.70090 1.36458 1.50286 0.97930 0.85917 0.82688 0.77667 0.77965 1.19911 1.19419 1.21861 1.23249 1.03092 1.02442 0.92603 1.22419 0.99960 1.02390 0.94836 0.90431 0.93000 0.95195 0.87369 0.90012 0.91329 0.94506 0.92592 0.87894 0.90608 0.94495 0.85553 0.93476 0.90379 0.85717 0.90130 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.05 8.86 71.98 0.64 -4.41 16 2 C -0.07 -1.53 2.51 -10.79 -0.03 -1.55 16 3 C -0.14 -2.51 8.70 71.98 0.63 -1.88 16 4 C -0.41 -11.28 2.48 30.59 0.08 -11.20 16 5 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 6 C -0.13 -2.43 8.45 71.98 0.61 -1.83 16 7 S 1.28 44.94 12.21 -56.49 -0.69 44.25 16 8 O -0.90 -45.02 14.93 -148.98 -2.22 -47.24 16 9 C -0.38 -15.69 5.26 71.98 0.38 -15.32 16 10 C 0.01 0.71 1.42 -52.93 -0.08 0.64 16 11 C -0.49 -28.75 7.76 25.60 0.20 -28.55 16 12 H 0.04 2.65 7.82 -2.91 -0.02 2.63 16 13 C 0.02 1.33 5.43 84.66 0.46 1.79 16 14 N -0.91 -55.41 12.66 21.45 0.27 -55.14 16 15 Si 0.93 48.80 29.54 68.60 2.03 50.83 16 16 H -0.27 -14.43 7.11 99.48 0.71 -13.72 16 17 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 18 H -0.29 -15.48 7.11 99.48 0.71 -14.78 16 19 C -0.18 -6.70 9.96 30.62 0.30 -6.39 16 20 C -0.16 -7.10 9.15 30.62 0.28 -6.82 16 21 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.05 1.84 5.58 -2.38 -0.01 1.83 16 23 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.08 1.13 6.35 -2.39 -0.02 1.11 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 1.12 6.44 -2.38 -0.02 1.11 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.21 6.35 -2.39 -0.02 1.19 16 31 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.13 4.02 6.69 -2.39 -0.02 4.00 16 33 H 0.26 14.99 8.32 -92.70 -0.77 14.22 16 34 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 35 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 36 H 0.08 3.28 8.14 -2.38 -0.02 3.26 16 37 H 0.05 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -78.41 305.87 3.87 -74.54 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 1.02 Total: 8.29 kcal Atomic # 6 Polarization: -79.00 SS G_CDS: 3.47 Total: -75.53 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.27 Total: -55.14 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -2.22 Total: -47.24 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 2.03 Total: 50.83 kcal Atomic # 16 Polarization: 44.94 SS G_CDS: -0.69 Total: 44.25 kcal Total: -78.41 3.87 -74.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232829158.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.879 kcal (2) G-P(sol) polarization free energy of solvation -78.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds