Wall clock time and date at job start Mon Mar 30 2020 05:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47463 * 2 1 4 4 C 1.53004 * 109.47463 * 179.97438 * 3 2 1 5 5 C 1.52991 * 109.47463 * 180.02562 * 4 3 2 6 6 S 1.81400 * 109.47129 * 179.97438 * 5 4 3 7 7 O 1.42091 * 109.47005 * 296.38712 * 6 5 4 8 8 C 1.81399 * 103.00084 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.47156 * 185.89560 * 8 6 5 10 10 C 1.50700 * 115.56129 * 40.26164 * 9 8 6 11 11 H 1.08001 * 119.99958 * 263.78943 * 10 9 8 12 12 C 1.37874 * 120.00066 * 83.79754 * 10 9 8 13 13 N 1.31523 * 119.99972 * 352.77040 * 12 10 9 14 14 Si 1.86796 * 120.00283 * 172.77378 * 12 10 9 15 15 H 1.48500 * 109.47099 * 359.97438 * 14 12 10 16 16 H 1.48508 * 109.47088 * 119.99635 * 14 12 10 17 17 H 1.48494 * 109.47485 * 239.99598 * 14 12 10 18 18 C 1.52997 * 117.49907 * 185.95191 * 9 8 6 19 19 C 1.52991 * 60.03191 * 107.47603 * 18 9 8 20 20 H 1.09007 * 109.46793 * 59.99867 * 1 2 3 21 21 H 1.08998 * 109.47556 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46877 * 300.00754 * 1 2 3 23 23 H 1.09001 * 109.46877 * 239.99245 * 2 1 3 24 24 H 1.09007 * 109.46793 * 120.00133 * 2 1 3 25 25 H 1.09001 * 109.47690 * 59.99744 * 3 2 1 26 26 H 1.08998 * 109.47069 * 299.99592 * 3 2 1 27 27 H 1.09001 * 109.46877 * 59.99245 * 4 3 2 28 28 H 1.09007 * 109.46793 * 300.00133 * 4 3 2 29 29 H 1.08993 * 109.47499 * 59.99478 * 5 4 3 30 30 H 1.08998 * 109.47069 * 299.99592 * 5 4 3 31 31 H 1.09001 * 109.47130 * 65.89328 * 8 6 5 32 32 H 1.09000 * 109.47084 * 305.89437 * 8 6 5 33 33 H 0.96997 * 119.99805 * 185.01563 * 13 12 10 34 34 H 1.09002 * 117.50269 * 214.97603 * 18 9 8 35 35 H 1.09006 * 117.50034 * 359.97085 * 18 9 8 36 36 H 1.08999 * 117.50048 * 107.50657 * 19 18 9 37 37 H 1.09008 * 117.50236 * 252.52334 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0802 2.8848 0.0013 6 16 5.8942 2.8847 0.0028 7 8 6.3668 2.2891 1.2032 8 6 6.3024 4.6521 0.0026 9 6 7.8154 4.8261 -0.1443 10 6 8.4862 3.8897 -1.1159 11 1 8.9531 2.9839 -0.7581 12 6 8.5042 4.1894 -2.4616 13 7 7.8168 5.2143 -2.9163 14 14 9.5047 3.1396 -3.6390 15 1 10.1822 2.0561 -2.8826 16 1 8.6040 2.5438 -4.6584 17 1 10.5235 3.9846 -4.3121 18 6 8.3781 6.2440 -0.0265 19 6 8.6039 5.2359 1.1020 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5140 0.8899 23 1 1.8933 -0.5140 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 1.6768 1.9563 0.8899 26 1 1.6769 1.9562 -0.8900 27 1 3.9338 0.9283 -0.8891 28 1 3.9331 0.9286 0.8909 29 1 3.7165 3.3984 0.8911 30 1 3.7173 3.3988 -0.8887 31 1 5.9744 5.1009 0.9403 32 1 5.7978 5.1415 -0.8304 33 1 7.7703 5.3821 -3.8705 34 1 9.2337 6.4995 -0.6517 35 1 7.6705 7.0529 0.1553 36 1 9.6079 4.8282 1.2193 37 1 8.0444 5.3813 2.0262 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233018129.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:42 Heat of formation + Delta-G solvation = -62.649118 kcal Electronic energy + Delta-G solvation = -15698.968012 eV Core-core repulsion = 13181.034152 eV Total energy + Delta-G solvation = -2517.933859 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.40680 -37.04198 -36.47278 -33.97348 -32.93901 -29.52099 -27.73307 -27.17047 -23.05783 -22.97301 -21.88322 -21.04977 -18.43045 -17.80986 -16.77382 -16.55586 -16.13686 -15.90193 -15.47382 -14.93778 -14.78312 -14.36820 -14.14203 -13.91675 -13.51879 -13.30322 -12.90148 -12.74026 -12.68879 -12.52451 -12.26811 -12.12964 -11.97660 -11.81247 -11.76783 -11.59268 -11.37111 -11.01573 -10.60638 -10.39381 -9.86318 -8.75659 -8.04397 -6.20755 0.84959 1.53438 1.59098 1.68926 2.15622 2.52744 3.09263 3.24024 3.46460 3.87584 3.99439 4.15689 4.20663 4.28005 4.41792 4.46343 4.65888 4.67926 4.71143 4.74995 4.90398 4.91074 5.01097 5.03220 5.05923 5.10043 5.20184 5.21768 5.33912 5.44555 5.51715 5.52892 5.56302 5.84741 6.41666 6.86961 7.50687 9.03639 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.025001 B = 0.005990 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.698375 B = 4673.457847 C = 5282.398286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.112 4.112 4 C -0.102 4.102 5 C -0.459 4.459 6 S 1.284 4.716 7 O -0.923 6.923 8 C -0.378 4.378 9 C 0.042 3.958 10 C -0.530 4.530 11 H 0.053 0.947 12 C 0.053 3.947 13 N -0.889 5.889 14 Si 0.938 3.062 15 H -0.272 1.272 16 H -0.260 1.260 17 H -0.286 1.286 18 C -0.151 4.151 19 C -0.212 4.212 20 H 0.059 0.941 21 H 0.061 0.939 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.137 0.863 31 H 0.050 0.950 32 H 0.120 0.880 33 H 0.268 0.732 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.562 -5.847 -1.175 13.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C -0.150 4.150 4 C -0.140 4.140 5 C -0.596 4.596 6 S 1.488 4.512 7 O -0.919 6.919 8 C -0.516 4.516 9 C 0.041 3.959 10 C -0.569 4.569 11 H 0.072 0.928 12 C -0.151 4.151 13 N -0.524 5.524 14 Si 0.763 3.237 15 H -0.197 1.197 16 H -0.185 1.185 17 H -0.213 1.213 18 C -0.190 4.190 19 C -0.250 4.250 20 H 0.079 0.921 21 H 0.080 0.920 22 H 0.069 0.931 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.155 0.845 31 H 0.069 0.931 32 H 0.138 0.862 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.966 -6.499 -1.296 12.813 hybrid contribution -0.016 1.139 1.522 1.901 sum -10.982 -5.360 0.227 12.223 Atomic orbital electron populations 1.21768 0.95036 1.02063 1.01945 1.21582 0.96572 0.96243 1.02259 1.21619 0.93571 0.97511 1.02332 1.21226 0.97096 0.93116 1.02594 1.27815 1.21355 1.03150 1.07292 1.70678 0.84517 0.86981 1.09036 1.92853 1.75929 1.69534 1.53614 1.26957 1.02813 1.17897 1.03973 1.18508 0.88371 0.95001 0.94033 1.20621 1.37741 1.06771 0.91722 0.92847 1.25477 0.95141 0.95531 0.98958 1.70049 1.39639 1.28246 1.14511 0.85817 0.79411 0.79080 0.79414 1.19693 1.18466 1.21262 1.22487 1.02478 0.93589 1.00397 1.23083 1.01621 1.07392 0.92876 0.92147 0.92038 0.93087 0.91034 0.92746 0.92988 0.90494 0.89104 0.93836 0.91489 0.84496 0.93057 0.86211 0.92209 0.91343 0.90823 0.90551 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 71.98 0.71 -1.61 16 2 C -0.13 -2.37 5.93 30.59 0.18 -2.19 16 3 C -0.11 -2.37 5.21 30.59 0.16 -2.21 16 4 C -0.10 -2.67 5.22 30.59 0.16 -2.51 16 5 C -0.46 -13.49 5.92 71.98 0.43 -13.07 16 6 S 1.28 50.19 12.02 -56.49 -0.68 49.51 16 7 O -0.92 -46.27 18.14 -148.98 -2.70 -48.97 16 8 C -0.38 -16.21 6.03 71.98 0.43 -15.77 16 9 C 0.04 2.06 1.62 -52.91 -0.09 1.98 16 10 C -0.53 -27.14 7.55 25.60 0.19 -26.94 16 11 H 0.05 2.83 7.82 -2.91 -0.02 2.81 16 12 C 0.05 2.60 5.39 84.65 0.46 3.06 16 13 N -0.89 -44.62 13.01 21.45 0.28 -44.34 16 14 Si 0.94 38.81 29.55 68.60 2.03 40.84 16 15 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 16 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 17 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 18 C -0.15 -7.11 9.56 30.59 0.29 -6.81 16 19 C -0.21 -9.98 9.88 30.61 0.30 -9.68 16 20 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 21 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 25 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 27 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.14 3.31 8.14 -2.39 -0.02 3.29 16 31 H 0.05 2.14 7.95 -2.39 -0.02 2.12 16 32 H 0.12 4.93 8.14 -2.39 -0.02 4.91 16 33 H 0.27 12.65 8.32 -92.71 -0.77 11.88 16 34 H 0.07 3.38 8.14 -2.39 -0.02 3.36 16 35 H 0.07 3.23 8.14 -2.38 -0.02 3.21 16 36 H 0.08 3.57 8.14 -2.39 -0.02 3.55 16 37 H 0.07 3.12 8.09 -2.38 -0.02 3.10 16 Total: -1.00 -62.36 320.59 3.16 -59.21 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 1.00 Total: 19.53 kcal Atomic # 6 Polarization: -79.00 SS G_CDS: 3.23 Total: -75.77 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.28 Total: -44.34 kcal Atomic # 8 Polarization: -46.27 SS G_CDS: -2.70 Total: -48.97 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Atomic # 16 Polarization: 50.19 SS G_CDS: -0.68 Total: 49.51 kcal Total: -62.36 3.16 -59.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233018129.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.442 kcal (2) G-P(sol) polarization free energy of solvation -62.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds