Wall clock time and date at job start Mon Mar 30 2020 05:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47495 * 2 1 4 4 H 1.09004 * 109.46742 * 305.00585 * 3 2 1 5 5 C 1.52998 * 109.46996 * 65.00008 * 3 2 1 6 6 C 1.52992 * 109.47265 * 185.00282 * 3 2 1 7 7 S 1.81401 * 109.47208 * 175.00025 * 6 3 2 8 8 O 1.42100 * 109.46984 * 63.60989 * 7 6 3 9 9 C 1.81402 * 103.00086 * 179.97438 * 7 6 3 10 10 C 1.52999 * 109.47046 * 183.96388 * 9 7 6 11 11 C 1.50706 * 115.54948 * 304.70333 * 10 9 7 12 12 H 1.08000 * 120.00265 * 95.17785 * 11 10 9 13 13 C 1.37879 * 119.99853 * 275.17694 * 11 10 9 14 14 N 1.31517 * 119.99664 * 7.31902 * 13 11 10 15 15 Si 1.86800 * 120.00127 * 187.31146 * 13 11 10 16 16 H 1.48496 * 109.47153 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.47212 * 300.00428 * 15 13 11 18 18 H 1.48506 * 109.46729 * 60.00376 * 15 13 11 19 19 C 1.53005 * 117.50270 * 90.36908 * 10 9 7 20 20 C 1.52995 * 117.50104 * 159.03247 * 10 9 7 21 21 H 1.09004 * 109.47152 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47147 * 299.99457 * 1 2 3 23 23 H 1.08996 * 109.47261 * 60.00046 * 1 2 3 24 24 H 1.09004 * 109.46765 * 239.99707 * 2 1 3 25 25 H 1.09002 * 109.47349 * 120.00670 * 2 1 3 26 26 H 1.09007 * 109.46906 * 300.00230 * 5 3 2 27 27 H 1.09005 * 109.47127 * 60.00175 * 5 3 2 28 28 H 1.08998 * 109.47078 * 179.97438 * 5 3 2 29 29 H 1.08998 * 109.47418 * 55.00078 * 6 3 2 30 30 H 1.09004 * 109.47128 * 295.00174 * 6 3 2 31 31 H 1.08994 * 109.47265 * 63.96733 * 9 7 6 32 32 H 1.09001 * 109.46734 * 303.95936 * 9 7 6 33 33 H 0.96999 * 120.00192 * 355.44014 * 14 13 11 34 34 H 1.08996 * 117.50194 * 215.00836 * 19 10 9 35 35 H 1.09006 * 117.49271 * 0.02643 * 19 10 9 36 36 H 1.08999 * 117.49587 * 359.97407 * 20 10 9 37 37 H 1.08997 * 117.50086 * 144.97812 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4442 -0.1258 7 16 4.1573 3.1523 -0.2745 8 8 3.8497 3.8656 0.9154 9 6 5.9549 2.9503 -0.4100 10 6 6.6216 4.3270 -0.4451 11 6 6.1276 5.2612 -1.5197 12 1 5.3570 5.9836 -1.2948 13 6 6.6596 5.1935 -2.7899 14 7 7.4910 4.2240 -3.1038 15 14 6.1994 6.4788 -4.0649 16 1 6.8999 6.1835 -5.3406 17 1 4.7316 6.4506 -4.2887 18 1 6.6004 7.8236 -3.5792 19 6 7.0378 4.9448 0.8913 20 6 8.1021 4.4049 -0.0673 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.8932 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 0.5489 2.1252 1.3969 27 1 2.0700 1.5874 2.1492 28 1 1.9991 3.1540 1.3076 29 1 3.8570 0.8800 -1.0114 30 1 4.0029 0.9834 0.7596 31 1 6.1917 2.4086 -1.3257 32 1 6.3234 2.3901 0.4493 33 1 7.7816 3.5954 -2.4246 34 1 6.9543 6.0267 0.9934 35 1 6.8370 4.3701 1.7956 36 1 8.6011 3.4753 0.2068 37 1 8.7189 5.1315 -0.5960 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233835075.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:30 Heat of formation + Delta-G solvation = -43.461896 kcal Electronic energy + Delta-G solvation = -16139.559117 eV Core-core repulsion = 13622.457278 eV Total energy + Delta-G solvation = -2517.101839 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -36.90556 -36.71816 -34.84785 -31.93701 -30.48499 -28.00704 -26.82717 -24.90195 -23.52309 -21.27457 -20.06340 -19.40533 -16.89939 -16.43726 -15.53389 -14.95231 -14.42297 -14.10453 -13.94516 -13.74426 -13.36656 -13.01841 -12.60572 -12.44665 -12.27421 -11.84208 -11.70801 -11.35912 -11.12697 -11.01629 -10.89297 -10.79237 -10.59359 -10.47862 -10.39518 -10.12042 -9.78308 -9.15725 -8.56711 -8.45068 -8.28079 -7.29777 -6.42528 -4.20004 2.24852 3.41803 3.44844 3.53082 3.62600 4.46283 4.52067 4.86732 4.96486 5.04681 5.15407 5.26965 5.34196 5.58350 5.60185 5.75471 5.78286 5.78835 5.95602 6.00293 6.06041 6.11441 6.15630 6.25898 6.27590 6.38920 6.47745 6.57585 6.64541 6.65065 6.87913 7.20685 7.26849 8.18245 8.35916 8.79969 9.58799 10.96469 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.027154 B = 0.006706 C = 0.006027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.899403 B = 4174.157935 C = 4644.768967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.065 4.065 4 H 0.079 0.921 5 C -0.174 4.174 6 C -0.469 4.469 7 S 1.268 4.732 8 O -0.852 6.852 9 C -0.388 4.388 10 C 0.040 3.960 11 C -0.584 4.584 12 H 0.059 0.941 13 C 0.035 3.965 14 N -0.898 5.898 15 Si 1.062 2.938 16 H -0.282 1.282 17 H -0.282 1.282 18 H -0.288 1.288 19 C -0.191 4.191 20 C -0.178 4.178 21 H 0.049 0.951 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.053 0.947 33 H 0.276 0.724 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.444 -6.566 1.532 11.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.084 4.084 4 H 0.097 0.903 5 C -0.231 4.231 6 C -0.603 4.603 7 S 1.468 4.532 8 O -0.848 6.848 9 C -0.527 4.527 10 C 0.039 3.961 11 C -0.622 4.622 12 H 0.077 0.923 13 C -0.173 4.173 14 N -0.532 5.532 15 Si 0.890 3.110 16 H -0.207 1.207 17 H -0.208 1.208 18 H -0.214 1.214 19 C -0.228 4.228 20 C -0.217 4.217 21 H 0.068 0.932 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.126 0.874 30 H 0.091 0.909 31 H 0.128 0.872 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.788 -5.346 -0.038 11.153 hybrid contribution 1.024 -1.695 3.570 4.083 sum -8.764 -7.041 3.532 11.784 Atomic orbital electron populations 1.21840 0.96104 1.01189 1.02024 1.21603 0.95527 0.96585 1.01730 1.20681 0.92491 0.96386 0.98839 0.90304 1.22277 1.00899 1.03304 0.96620 1.28024 1.02234 1.23844 1.06208 1.71156 0.88902 0.82631 1.10553 1.92945 1.79035 1.60832 1.51938 1.27158 1.17308 1.03565 1.04673 1.18555 0.92674 0.90840 0.94046 1.21347 1.25240 1.20062 0.95568 0.92255 1.25802 0.94408 0.98786 0.98258 1.70743 1.31458 1.13900 1.37075 0.83642 0.76441 0.75134 0.75804 1.20727 1.20793 1.21409 1.22881 1.06406 0.99794 0.93737 1.22814 0.93680 1.00888 1.04310 0.93159 0.92585 0.92538 0.91923 0.92556 0.92723 0.93488 0.89466 0.87366 0.90938 0.87157 0.92756 0.91227 0.89962 0.91789 0.91798 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.67 37.16 0.36 -1.16 16 2 C -0.12 -1.32 5.40 -26.73 -0.14 -1.47 16 3 C -0.06 -0.87 2.39 -90.62 -0.22 -1.08 16 4 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 5 C -0.17 -2.56 8.61 37.16 0.32 -2.24 16 6 C -0.47 -6.95 5.37 37.15 0.20 -6.75 16 7 S 1.27 23.51 12.34 -107.50 -1.33 22.18 16 8 O -0.85 -19.48 15.46 -35.23 -0.54 -20.03 16 9 C -0.39 -8.19 5.79 37.16 0.22 -7.98 16 10 C 0.04 0.98 1.01 -155.66 -0.16 0.83 16 11 C -0.58 -15.20 8.12 -34.44 -0.28 -15.48 16 12 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 13 C 0.03 0.90 5.38 -17.82 -0.10 0.80 16 14 N -0.90 -24.62 13.57 55.43 0.75 -23.87 16 15 Si 1.06 23.12 29.91 -169.99 -5.08 18.04 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 18 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 19 C -0.19 -4.51 9.93 -26.69 -0.27 -4.77 16 20 C -0.18 -4.19 8.77 -26.69 -0.23 -4.43 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.68 6.57 -51.93 -0.34 0.34 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 1.53 5.35 -51.93 -0.28 1.25 16 29 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 31 H 0.11 2.28 7.71 -51.93 -0.40 1.88 16 32 H 0.05 1.10 8.10 -51.92 -0.42 0.68 16 33 H 0.28 7.54 6.12 -40.82 -0.25 7.29 16 34 H 0.08 1.94 8.14 -51.93 -0.42 1.52 16 35 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.08 2.10 8.14 -51.93 -0.42 1.67 16 LS Contribution 308.97 15.07 4.66 4.66 Total: -1.00 -30.36 308.97 -8.16 -38.51 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.31 Total: 4.22 kcal Atomic # 6 Polarization: -43.42 SS G_CDS: -0.30 Total: -43.72 kcal Atomic # 7 Polarization: -24.62 SS G_CDS: 0.75 Total: -23.87 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.54 Total: -20.03 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.08 Total: 18.04 kcal Atomic # 16 Polarization: 23.51 SS G_CDS: -1.33 Total: 22.18 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.36 -8.16 -38.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233835075.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.950 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds