Wall clock time and date at job start Mon Mar 30 2020 05:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47495 * 2 1 4 4 H 1.09004 * 109.46742 * 305.00585 * 3 2 1 5 5 C 1.52998 * 109.46996 * 65.00008 * 3 2 1 6 6 C 1.52992 * 109.47265 * 185.00282 * 3 2 1 7 7 S 1.81401 * 109.47208 * 175.00025 * 6 3 2 8 8 O 1.42100 * 109.46984 * 63.60989 * 7 6 3 9 9 C 1.81402 * 103.00086 * 179.97438 * 7 6 3 10 10 C 1.52999 * 109.47046 * 183.96388 * 9 7 6 11 11 C 1.50706 * 115.54948 * 304.70333 * 10 9 7 12 12 H 1.08000 * 120.00265 * 95.17785 * 11 10 9 13 13 C 1.37879 * 119.99853 * 275.17694 * 11 10 9 14 14 N 1.31517 * 119.99664 * 7.31902 * 13 11 10 15 15 Si 1.86800 * 120.00127 * 187.31146 * 13 11 10 16 16 H 1.48496 * 109.47153 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.47212 * 300.00428 * 15 13 11 18 18 H 1.48506 * 109.46729 * 60.00376 * 15 13 11 19 19 C 1.53005 * 117.50270 * 90.36908 * 10 9 7 20 20 C 1.52995 * 117.50104 * 159.03247 * 10 9 7 21 21 H 1.09004 * 109.47152 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47147 * 299.99457 * 1 2 3 23 23 H 1.08996 * 109.47261 * 60.00046 * 1 2 3 24 24 H 1.09004 * 109.46765 * 239.99707 * 2 1 3 25 25 H 1.09002 * 109.47349 * 120.00670 * 2 1 3 26 26 H 1.09007 * 109.46906 * 300.00230 * 5 3 2 27 27 H 1.09005 * 109.47127 * 60.00175 * 5 3 2 28 28 H 1.08998 * 109.47078 * 179.97438 * 5 3 2 29 29 H 1.08998 * 109.47418 * 55.00078 * 6 3 2 30 30 H 1.09004 * 109.47128 * 295.00174 * 6 3 2 31 31 H 1.08994 * 109.47265 * 63.96733 * 9 7 6 32 32 H 1.09001 * 109.46734 * 303.95936 * 9 7 6 33 33 H 0.96999 * 120.00192 * 355.44014 * 14 13 11 34 34 H 1.08996 * 117.50194 * 215.00836 * 19 10 9 35 35 H 1.09006 * 117.49271 * 0.02643 * 19 10 9 36 36 H 1.08999 * 117.49587 * 359.97407 * 20 10 9 37 37 H 1.08997 * 117.50086 * 144.97812 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4442 -0.1258 7 16 4.1573 3.1523 -0.2745 8 8 3.8497 3.8656 0.9154 9 6 5.9549 2.9503 -0.4100 10 6 6.6216 4.3270 -0.4451 11 6 6.1276 5.2612 -1.5197 12 1 5.3570 5.9836 -1.2948 13 6 6.6596 5.1935 -2.7899 14 7 7.4910 4.2240 -3.1038 15 14 6.1994 6.4788 -4.0649 16 1 6.8999 6.1835 -5.3406 17 1 4.7316 6.4506 -4.2887 18 1 6.6004 7.8236 -3.5792 19 6 7.0378 4.9448 0.8913 20 6 8.1021 4.4049 -0.0673 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.8932 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 0.5489 2.1252 1.3969 27 1 2.0700 1.5874 2.1492 28 1 1.9991 3.1540 1.3076 29 1 3.8570 0.8800 -1.0114 30 1 4.0029 0.9834 0.7596 31 1 6.1917 2.4086 -1.3257 32 1 6.3234 2.3901 0.4493 33 1 7.7816 3.5954 -2.4246 34 1 6.9543 6.0267 0.9934 35 1 6.8370 4.3701 1.7956 36 1 8.6011 3.4753 0.2068 37 1 8.7189 5.1315 -0.5960 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233835075.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:30 Heat of formation + Delta-G solvation = -60.567273 kcal Electronic energy + Delta-G solvation = -16140.300862 eV Core-core repulsion = 13622.457278 eV Total energy + Delta-G solvation = -2517.843584 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.76935 -37.80107 -36.47824 -33.93345 -31.43194 -29.68152 -28.11274 -26.87741 -24.48252 -23.18983 -21.55721 -20.84797 -18.67347 -18.12550 -16.76615 -16.37796 -15.91036 -15.64610 -15.49242 -15.15769 -14.80160 -14.48985 -14.26504 -13.92110 -13.71625 -13.08137 -13.00041 -12.80263 -12.57581 -12.50099 -12.32844 -12.25266 -12.12739 -11.82619 -11.67257 -11.54639 -11.41389 -10.79280 -10.49440 -10.39845 -10.04621 -8.85079 -8.48302 -6.26591 0.76055 1.68400 1.73558 1.93392 2.04755 2.66087 3.01367 3.25098 3.30468 3.79274 3.93134 3.97154 4.07979 4.24135 4.40693 4.41496 4.54935 4.60700 4.60963 4.69789 4.72416 4.78083 4.80673 4.94270 4.97506 5.07354 5.18089 5.22478 5.27212 5.33339 5.37323 5.47448 5.55657 6.19205 6.28734 6.74683 7.58036 8.91465 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.027154 B = 0.006706 C = 0.006027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.899403 B = 4174.157935 C = 4644.768967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.069 4.069 4 H 0.096 0.904 5 C -0.174 4.174 6 C -0.453 4.453 7 S 1.285 4.715 8 O -0.899 6.899 9 C -0.391 4.391 10 C 0.021 3.979 11 C -0.592 4.592 12 H 0.049 0.951 13 C -0.001 4.001 14 N -0.919 5.919 15 Si 1.100 2.900 16 H -0.284 1.284 17 H -0.256 1.256 18 H -0.285 1.285 19 C -0.192 4.192 20 C -0.175 4.175 21 H 0.062 0.938 22 H 0.052 0.948 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.037 0.963 28 H 0.057 0.943 29 H 0.137 0.863 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.056 0.944 33 H 0.268 0.732 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.905 -7.698 0.635 13.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.089 4.089 4 H 0.114 0.886 5 C -0.231 4.231 6 C -0.590 4.590 7 S 1.487 4.513 8 O -0.895 6.895 9 C -0.528 4.528 10 C 0.020 3.980 11 C -0.630 4.630 12 H 0.067 0.933 13 C -0.203 4.203 14 N -0.553 5.553 15 Si 0.922 3.078 16 H -0.210 1.210 17 H -0.180 1.180 18 H -0.211 1.211 19 C -0.229 4.229 20 C -0.214 4.214 21 H 0.081 0.919 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.094 0.906 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.155 0.845 30 H 0.085 0.915 31 H 0.132 0.868 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.228 -6.449 -0.916 12.981 hybrid contribution 1.438 -1.421 3.915 4.406 sum -9.790 -7.871 2.999 12.915 Atomic orbital electron populations 1.21842 0.94798 1.02195 1.02293 1.21576 0.96668 0.94688 1.02192 1.20819 0.91220 0.98212 0.98638 0.88625 1.22260 1.02245 1.01395 0.97239 1.27872 1.03380 1.20332 1.07436 1.70517 0.86591 0.84707 1.09470 1.92891 1.79075 1.64074 1.53431 1.27140 1.19209 1.01597 1.04888 1.18781 0.93145 0.92345 0.93747 1.21484 1.25019 1.20172 0.96316 0.93327 1.26941 0.93749 0.99538 1.00090 1.70845 1.32754 1.14786 1.36956 0.83155 0.77814 0.73124 0.73673 1.20964 1.17997 1.21075 1.22858 1.06576 0.99494 0.93972 1.22751 0.93491 1.01085 1.04037 0.91852 0.92887 0.91736 0.90589 0.93021 0.90588 0.94406 0.92456 0.84475 0.91471 0.86833 0.92551 0.92136 0.90640 0.91201 0.90262 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.67 71.98 0.70 -1.82 16 2 C -0.11 -2.20 5.40 30.59 0.17 -2.04 16 3 C -0.07 -1.69 2.39 -10.80 -0.03 -1.71 16 4 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 5 C -0.17 -4.92 8.61 71.98 0.62 -4.30 16 6 C -0.45 -12.41 5.37 71.98 0.39 -12.02 16 7 S 1.28 46.82 12.34 -56.49 -0.70 46.13 16 8 O -0.90 -41.48 15.46 -148.98 -2.30 -43.78 16 9 C -0.39 -16.32 5.79 71.98 0.42 -15.91 16 10 C 0.02 1.03 1.01 -52.93 -0.05 0.98 16 11 C -0.59 -30.88 8.12 25.60 0.21 -30.67 16 12 H 0.05 2.59 7.82 -2.91 -0.02 2.57 16 13 C 0.00 -0.05 5.38 84.65 0.46 0.41 16 14 N -0.92 -50.19 13.57 21.45 0.29 -49.90 16 15 Si 1.10 45.67 29.91 68.60 2.05 47.72 16 16 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 17 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 18 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 19 C -0.19 -9.14 9.93 30.62 0.30 -8.84 16 20 C -0.17 -8.30 8.77 30.62 0.27 -8.03 16 21 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.05 0.89 6.57 -2.39 -0.02 0.88 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.08 1.77 6.57 -2.38 -0.02 1.76 16 27 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.06 1.99 5.35 -2.39 -0.01 1.98 16 29 H 0.14 3.02 8.14 -2.39 -0.02 3.00 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.11 4.61 7.71 -2.39 -0.02 4.59 16 32 H 0.06 2.26 8.10 -2.39 -0.02 2.25 16 33 H 0.27 14.68 6.12 -92.71 -0.57 14.11 16 34 H 0.07 3.64 8.14 -2.39 -0.02 3.62 16 35 H 0.07 3.20 8.14 -2.38 -0.02 3.18 16 36 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 37 H 0.07 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -64.64 308.97 4.00 -60.64 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 1.22 Total: 23.15 kcal Atomic # 6 Polarization: -87.39 SS G_CDS: 3.44 Total: -83.95 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.29 Total: -49.90 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -2.30 Total: -43.78 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.05 Total: 47.72 kcal Atomic # 16 Polarization: 46.82 SS G_CDS: -0.70 Total: 46.13 kcal Total: -64.64 4.00 -60.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233835075.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.068 kcal (2) G-P(sol) polarization free energy of solvation -64.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds