Wall clock time and date at job start Mon Mar 30 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47057 * 2 1 4 4 H 1.09003 * 109.47472 * 54.99532 * 3 2 1 5 5 C 1.53002 * 109.47137 * 294.99918 * 3 2 1 6 6 C 1.53002 * 109.47505 * 174.99838 * 3 2 1 7 7 S 1.81393 * 109.47307 * 179.41130 * 6 3 2 8 8 O 1.42104 * 109.47244 * 290.75549 * 7 6 3 9 9 C 1.81398 * 103.00163 * 174.36786 * 7 6 3 10 10 C 1.52997 * 109.47365 * 185.95733 * 9 7 6 11 11 C 1.50699 * 115.55216 * 306.34985 * 10 9 7 12 12 H 1.08003 * 119.99821 * 88.65284 * 11 10 9 13 13 C 1.37877 * 119.99784 * 268.65468 * 11 10 9 14 14 N 1.31518 * 119.99379 * 181.17485 * 13 11 10 15 15 Si 1.86798 * 120.00124 * 1.17381 * 13 11 10 16 16 H 1.48512 * 109.46809 * 265.05203 * 15 13 11 17 17 H 1.48493 * 109.47107 * 25.05212 * 15 13 11 18 18 H 1.48494 * 109.47323 * 145.05779 * 15 13 11 19 19 C 1.53004 * 117.49705 * 92.02076 * 10 9 7 20 20 C 1.53002 * 117.49761 * 160.67467 * 10 9 7 21 21 H 1.09008 * 109.46860 * 60.00400 * 1 2 3 22 22 H 1.09004 * 109.46645 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47234 * 300.00217 * 1 2 3 24 24 H 1.08997 * 109.47797 * 240.00281 * 2 1 3 25 25 H 1.09000 * 109.47045 * 119.99264 * 2 1 3 26 26 H 1.08997 * 109.46961 * 59.94721 * 5 3 2 27 27 H 1.09000 * 109.47174 * 179.97438 * 5 3 2 28 28 H 1.08995 * 109.46791 * 299.94745 * 5 3 2 29 29 H 1.08995 * 109.46903 * 59.40590 * 6 3 2 30 30 H 1.09003 * 109.46688 * 299.41163 * 6 3 2 31 31 H 1.09001 * 109.47050 * 65.95786 * 9 7 6 32 32 H 1.09008 * 109.47299 * 305.96233 * 9 7 6 33 33 H 0.97004 * 119.99253 * 180.02562 * 14 13 11 34 34 H 1.08997 * 117.50050 * 215.00332 * 19 10 9 35 35 H 1.09001 * 117.49678 * 0.02562 * 19 10 9 36 36 H 1.09001 * 117.49885 * 359.97438 * 20 10 9 37 37 H 1.09006 * 117.49668 * 144.97678 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9817 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4445 0.1258 7 16 4.1708 3.1541 0.1083 8 8 3.9863 3.7089 -1.1869 9 6 5.9445 2.9618 0.4364 10 6 6.5852 4.3413 0.6016 11 6 6.3437 5.3095 -0.5277 12 1 5.4731 5.9485 -0.5142 13 6 7.2342 5.3795 -1.5780 14 7 7.0357 6.2408 -2.5519 15 14 8.7224 4.2513 -1.6176 16 1 9.8941 4.9571 -1.0393 17 1 8.4386 3.0296 -0.8227 18 1 9.0177 3.8705 -3.0222 19 6 6.6724 4.9147 2.0174 20 6 7.9364 4.4117 1.3158 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5137 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 0.5490 2.1244 -1.3974 27 1 1.9982 3.1544 -1.3072 28 1 2.0706 1.5881 -2.1491 29 1 3.9990 0.8964 -0.7104 30 1 3.8527 0.9665 1.0621 31 1 6.4139 2.4407 -0.3980 32 1 6.0844 2.3843 1.3503 33 1 7.6620 6.2897 -3.2911 34 1 6.5551 5.9923 2.1321 35 1 6.2737 4.3089 2.8312 36 1 8.3687 3.4752 1.6684 37 1 8.6509 5.1581 0.9686 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234013337.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:35 Heat of formation + Delta-G solvation = -28.734089 kcal Electronic energy + Delta-G solvation = -16211.614727 eV Core-core repulsion = 13695.151534 eV Total energy + Delta-G solvation = -2516.463193 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -36.96400 -36.71441 -34.66847 -31.98902 -30.49076 -28.16283 -26.86384 -25.27927 -23.53103 -21.67380 -19.99232 -18.97768 -16.80690 -16.10990 -15.44289 -14.95737 -14.80714 -14.39355 -13.88972 -13.71495 -13.20993 -13.07735 -12.61116 -12.53558 -12.33658 -11.99224 -11.67710 -11.45002 -11.10687 -11.05778 -10.80669 -10.71101 -10.56724 -10.48573 -10.40098 -10.18348 -9.55664 -9.20954 -8.97977 -8.51576 -8.32429 -7.34021 -6.02090 -4.05143 2.28013 3.30138 3.40287 3.43773 3.54226 4.47751 4.64882 4.85895 4.93440 4.96447 5.04444 5.25946 5.33953 5.57689 5.59814 5.73159 5.76237 5.80699 5.94098 5.96313 6.02277 6.12049 6.14384 6.14416 6.19616 6.27830 6.44470 6.47734 6.49168 6.67275 6.72907 7.07705 7.16166 7.77508 8.52315 9.03221 9.61203 11.10524 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.033493 B = 0.006775 C = 0.006325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.795333 B = 4132.153283 C = 4426.093093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.064 4.064 4 H 0.078 0.922 5 C -0.172 4.172 6 C -0.473 4.473 7 S 1.253 4.747 8 O -0.808 6.808 9 C -0.402 4.402 10 C 0.019 3.981 11 C -0.490 4.490 12 H 0.084 0.916 13 C 0.084 3.916 14 N -0.890 5.890 15 Si 0.874 3.126 16 H -0.280 1.280 17 H -0.259 1.259 18 H -0.297 1.297 19 C -0.181 4.181 20 C -0.198 4.198 21 H 0.057 0.943 22 H 0.049 0.951 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.263 0.737 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.818 -10.574 10.182 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.083 4.083 4 H 0.096 0.904 5 C -0.230 4.230 6 C -0.607 4.607 7 S 1.450 4.550 8 O -0.803 6.803 9 C -0.540 4.540 10 C 0.017 3.983 11 C -0.527 4.527 12 H 0.102 0.898 13 C -0.119 4.119 14 N -0.527 5.527 15 Si 0.703 3.297 16 H -0.206 1.206 17 H -0.183 1.183 18 H -0.224 1.224 19 C -0.218 4.218 20 C -0.237 4.237 21 H 0.076 0.924 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.281 -9.699 9.806 16.624 hybrid contribution 2.198 -2.070 -1.784 3.507 sum -7.083 -11.769 8.023 15.907 Atomic orbital electron populations 1.21843 0.96099 1.01177 1.02048 1.21599 0.95521 0.96671 1.01662 1.20682 0.92459 0.96325 0.98821 0.90375 1.22243 1.00903 1.03016 0.96808 1.28097 1.02341 1.24203 1.06015 1.70385 0.90248 0.85539 1.08785 1.93205 1.80242 1.64934 1.41916 1.27363 1.18707 1.02991 1.04964 1.18868 0.95296 0.91501 0.92646 1.20284 1.10542 1.19753 1.02162 0.89764 1.24922 0.97526 0.94471 0.94948 1.69897 1.36872 1.35501 1.10431 0.86941 0.83568 0.82693 0.76540 1.20579 1.18282 1.22391 1.22972 1.02264 1.00591 0.95956 1.22945 0.92320 1.01357 1.07071 0.92445 0.93211 0.92626 0.92476 0.92145 0.92664 0.89892 0.93058 0.90658 0.87909 0.90482 0.89451 0.92759 0.89174 0.90414 0.91021 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.67 37.16 0.36 -1.08 16 2 C -0.12 -1.26 5.40 -26.73 -0.14 -1.40 16 3 C -0.06 -0.79 2.46 -90.62 -0.22 -1.02 16 4 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 5 C -0.17 -2.54 8.42 37.16 0.31 -2.23 16 6 C -0.47 -6.53 5.43 37.16 0.20 -6.32 16 7 S 1.25 21.78 12.31 -107.50 -1.32 20.46 16 8 O -0.81 -19.69 14.64 -35.23 -0.52 -20.20 16 9 C -0.40 -7.84 5.69 37.16 0.21 -7.63 16 10 C 0.02 0.43 0.93 -155.66 -0.15 0.28 16 11 C -0.49 -13.83 7.84 -34.44 -0.27 -14.10 16 12 H 0.08 2.61 8.06 -52.48 -0.42 2.18 16 13 C 0.08 2.52 5.47 -17.82 -0.10 2.43 16 14 N -0.89 -28.46 13.96 55.43 0.77 -27.69 16 15 Si 0.87 22.70 24.80 -169.99 -4.22 18.48 16 16 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.26 -6.35 5.65 56.52 0.32 -6.03 16 18 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 19 C -0.18 -3.38 9.92 -26.69 -0.26 -3.64 16 20 C -0.20 -4.15 7.29 -26.70 -0.19 -4.34 16 21 H 0.06 0.55 6.56 -51.92 -0.34 0.21 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.69 6.56 -51.93 -0.34 0.35 16 27 H 0.08 1.44 5.47 -51.93 -0.28 1.16 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.10 1.12 8.14 -51.92 -0.42 0.70 16 31 H 0.08 1.68 7.04 -51.92 -0.37 1.32 16 32 H 0.09 1.34 8.08 -51.92 -0.42 0.92 16 33 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 34 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.09 1.93 6.79 -51.93 -0.35 1.58 16 LS Contribution 300.55 15.07 4.53 4.53 Total: -1.00 -35.30 300.55 -7.40 -42.70 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -6.39 Total: 0.78 kcal Atomic # 6 Polarization: -38.81 SS G_CDS: -0.25 Total: -39.06 kcal Atomic # 7 Polarization: -28.46 SS G_CDS: 0.77 Total: -27.69 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.52 Total: -20.20 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.22 Total: 18.48 kcal Atomic # 16 Polarization: 21.78 SS G_CDS: -1.32 Total: 20.46 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -35.30 -7.40 -42.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234013337.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.965 kcal (2) G-P(sol) polarization free energy of solvation -35.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds